Click here to switch to the map view.

The map label for this gene is yagR [H]

Identifier: 92112662

GI number: 92112662

Start: 586850

End: 589078

Strand: Direct

Name: yagR [H]

Synonym: Csal_0529

Alternate gene names: 92112662

Gene position: 586850-589078 (Clockwise)

Preceding gene: 92112661

Following gene: 92112674

Centisome position: 15.88

GC content: 65.68

Gene sequence:

>2229_bases
ATGAGCGACAAACAGCACAGCATCATCGGCGCGGGCGTGCCGCGCATCGACGGCCCGGACAAGCTCGCCGGCCGCGCCAA
CTATGCCGCCGACAACCTGCCGGCCGACATGGCGTACGGCTATGGGGTGTTCAGTACCATCGCCAAGGGCAAGGTGGCAC
GGATCAAGGTCGATGAGGCGAAGCGGATGCCGGGCGTCATCGATATCTTCCATCATGGGCATTTCCCGTCGCTGTACCGG
ACGCCGTCGAGCTTCGCGCAGGGCAACAAGGTGGAAGAAACTCGGCTGCCGTTCGAGGACGAGCGTGTGTACTACGAGGG
CCAGTTCGTGGCGCTCGTGGTCGCCGACAGCTTCGAGAACGCGCGTGCCGCCGCGCGCCACGTCGAGGTGGAATACGCCT
CTGAGTCGGCCGTCGCCAATCTCGCCCAGGGACTCGACGACAATGGCACGCAGGCAGGTAGCGGCAATCACTCTCGGGGA
GATGCGTCCGGGGCGTTCGAAGACGCGGCAGCGAGCATCGACGTCACCTATCACACCCCGGTGGAAACCCATAACCCGAT
GGAGATGCATGCCTCCGTGGCGTACTGGGACGCGCAGGGCAATCTGACCATCTATGATGCCTCGCAAGGGGTCGTGGTCG
AGCGCAATGCACTGTCCAAGATCTTCGCCATCGCTCCTGAGCGCATCACGGTGCATGCGCCGTACATCGGCTCGGGATTC
GGCAGCAAGCTGTGGACCTGGCCACACGCCGTCGCCACCGCCGCCGTGGCGCGTGAAGTGGGACGCCCGGTGCAGCTCGT
CGTGCCGCGTCAGCAGATGTTCACCACTACCGGGCATCGCCCCGAAACGCGTCAGCGCATGCGCCTGGCCACCGATGCCA
ACGGCAGGCTGGTCTCGCTGCGTCACGAATCGATCAACACCACGTCGTTCACCGATCAGTACGTGGAAACCTGCGGCAGC
GTGACCAAAAGCCTCTACAGCTGTCCCAACCTGACGGTGAGCCATGCCACGACCCAGGTGAATCGCGGCACTCCCACGTC
GATGCGTGCGCCCGGCGCGGCGCCGGGGCTGTTCGCGCTGGAGTCGGCGATCGACGAGATGGCGCTGGCGGCGGGTGTCG
ATCCGGTGCAGTTCCGGCTCGACAATTATGCCGAGCGCGACGAAAGTCAGGATCTGGATTTCTCCAGCAACCACATCGTC
GAAGCAACGAATCGGGCGGCGGAGACATTCGGCTGGGCCGACCGCAATCCACGGATCGGCAGCATGCGCGAGGGGCGCGA
GATCATCGGCTATGGCATGGCAGCCTGCAATTGGGAAGCGCTGAAGCGCCCCTGCGATGCACGCGTGTCGCTGCGTGCCG
ATGGCACCGCCTTTGCCTCCTGCGCGACACAGGACATCGGCACCGGCACCTACACCATCGTGGCGCAGGCGGTGAGCGAC
GTGACCGGCATCCCGATCGACCGTATCACCGTCAAGCTGGGCGATTCCTCCTATCCGGACGGACCGATCTCCGGCGGCTC
CTGGGCCACGGCGACGACCCTGCCGGCCATCGCCGGGGCGGCGCGCAATGCCCTCGACGAGATGAAGCGCTACGCCACCG
GCGACAACGGTGTCTTCGCCGGGGCGTCCAGCGACGAGCTGGACGTCGTGGACGGCGGCCTGCGCAATGCCGGCGGCAAG
CAGGCGAGCTTCGCCGAGGTCCTCGACGCCGCGCGTTACGGCAGCGCCGACGGCGAAGCGCATACCGAGGCCGCCGACTC
GCAATACTCCTATCGCTCCTTCGGTGCTCATTTCGTCGAGGTGCGCTGGGATCCGGGCATTTCTCACCTGCGCGTGTCGC
GCGTGGTCAGTGCCATCGACGTGGGCCGCGTGATCAACGAAACCACGGCGCGCAATCAGGTCGAGGGCGCGGTCGTCATG
GGCATCGGCATGGGGCTGTTCGAAGCCACCGAGTACGACGAGCGCAACGGTCGTCCCGTGAACAACGACTATGCCGAGTA
CGTGGTGCCGGTACACGCCGATCAGCCGGAGATCGACGTCATCCTGCTCGATTACCCGGACCTGGCGTTCAACGAGTACG
GTGCGCGCGGTATCGGCGAGATCGGCATCACCGGGCTTGCGGCTGCCATCGGCAATGCGGTGCACCATGCCACCGGCAAG
CGCATTCGCGAACTGCCGATCACCCTCGACAAGCTGATGGACGACGTACCCCAGGCGCAAAGCGCCTGA

Upstream 100 bases:

>100_bases
TATTCCCAGAACGGCTACAAGATTCCGCTCGGCCAGCAGGCCATCGTGCGCAATCTGTCCGACCTGACCGCCGCCTGATC
GCCCGCGAGGAGAACCGACC

Downstream 100 bases:

>100_bases
GGCGCGTCGGCTGATCTCAGTGCCTCGCGCCGCCGCCAGCGGGCGTCGCGAGGTGTTGCAGGTCCGAAGGCGTATCGACG
TCCAGCAGAATGCCGGGATC

Product: xanthine dehydrogenase, molybdenum binding subunit apoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 742; Mature: 741

Protein sequence:

>742_residues
MSDKQHSIIGAGVPRIDGPDKLAGRANYAADNLPADMAYGYGVFSTIAKGKVARIKVDEAKRMPGVIDIFHHGHFPSLYR
TPSSFAQGNKVEETRLPFEDERVYYEGQFVALVVADSFENARAAARHVEVEYASESAVANLAQGLDDNGTQAGSGNHSRG
DASGAFEDAAASIDVTYHTPVETHNPMEMHASVAYWDAQGNLTIYDASQGVVVERNALSKIFAIAPERITVHAPYIGSGF
GSKLWTWPHAVATAAVAREVGRPVQLVVPRQQMFTTTGHRPETRQRMRLATDANGRLVSLRHESINTTSFTDQYVETCGS
VTKSLYSCPNLTVSHATTQVNRGTPTSMRAPGAAPGLFALESAIDEMALAAGVDPVQFRLDNYAERDESQDLDFSSNHIV
EATNRAAETFGWADRNPRIGSMREGREIIGYGMAACNWEALKRPCDARVSLRADGTAFASCATQDIGTGTYTIVAQAVSD
VTGIPIDRITVKLGDSSYPDGPISGGSWATATTLPAIAGAARNALDEMKRYATGDNGVFAGASSDELDVVDGGLRNAGGK
QASFAEVLDAARYGSADGEAHTEAADSQYSYRSFGAHFVEVRWDPGISHLRVSRVVSAIDVGRVINETTARNQVEGAVVM
GIGMGLFEATEYDERNGRPVNNDYAEYVVPVHADQPEIDVILLDYPDLAFNEYGARGIGEIGITGLAAAIGNAVHHATGK
RIRELPITLDKLMDDVPQAQSA

Sequences:

>Translated_742_residues
MSDKQHSIIGAGVPRIDGPDKLAGRANYAADNLPADMAYGYGVFSTIAKGKVARIKVDEAKRMPGVIDIFHHGHFPSLYR
TPSSFAQGNKVEETRLPFEDERVYYEGQFVALVVADSFENARAAARHVEVEYASESAVANLAQGLDDNGTQAGSGNHSRG
DASGAFEDAAASIDVTYHTPVETHNPMEMHASVAYWDAQGNLTIYDASQGVVVERNALSKIFAIAPERITVHAPYIGSGF
GSKLWTWPHAVATAAVAREVGRPVQLVVPRQQMFTTTGHRPETRQRMRLATDANGRLVSLRHESINTTSFTDQYVETCGS
VTKSLYSCPNLTVSHATTQVNRGTPTSMRAPGAAPGLFALESAIDEMALAAGVDPVQFRLDNYAERDESQDLDFSSNHIV
EATNRAAETFGWADRNPRIGSMREGREIIGYGMAACNWEALKRPCDARVSLRADGTAFASCATQDIGTGTYTIVAQAVSD
VTGIPIDRITVKLGDSSYPDGPISGGSWATATTLPAIAGAARNALDEMKRYATGDNGVFAGASSDELDVVDGGLRNAGGK
QASFAEVLDAARYGSADGEAHTEAADSQYSYRSFGAHFVEVRWDPGISHLRVSRVVSAIDVGRVINETTARNQVEGAVVM
GIGMGLFEATEYDERNGRPVNNDYAEYVVPVHADQPEIDVILLDYPDLAFNEYGARGIGEIGITGLAAAIGNAVHHATGK
RIRELPITLDKLMDDVPQAQSA
>Mature_741_residues
SDKQHSIIGAGVPRIDGPDKLAGRANYAADNLPADMAYGYGVFSTIAKGKVARIKVDEAKRMPGVIDIFHHGHFPSLYRT
PSSFAQGNKVEETRLPFEDERVYYEGQFVALVVADSFENARAAARHVEVEYASESAVANLAQGLDDNGTQAGSGNHSRGD
ASGAFEDAAASIDVTYHTPVETHNPMEMHASVAYWDAQGNLTIYDASQGVVVERNALSKIFAIAPERITVHAPYIGSGFG
SKLWTWPHAVATAAVAREVGRPVQLVVPRQQMFTTTGHRPETRQRMRLATDANGRLVSLRHESINTTSFTDQYVETCGSV
TKSLYSCPNLTVSHATTQVNRGTPTSMRAPGAAPGLFALESAIDEMALAAGVDPVQFRLDNYAERDESQDLDFSSNHIVE
ATNRAAETFGWADRNPRIGSMREGREIIGYGMAACNWEALKRPCDARVSLRADGTAFASCATQDIGTGTYTIVAQAVSDV
TGIPIDRITVKLGDSSYPDGPISGGSWATATTLPAIAGAARNALDEMKRYATGDNGVFAGASSDELDVVDGGLRNAGGKQ
ASFAEVLDAARYGSADGEAHTEAADSQYSYRSFGAHFVEVRWDPGISHLRVSRVVSAIDVGRVINETTARNQVEGAVVMG
IGMGLFEATEYDERNGRPVNNDYAEYVVPVHADQPEIDVILLDYPDLAFNEYGARGIGEIGITGLAAAIGNAVHHATGKR
IRELPITLDKLMDDVPQAQSA

Specific function: Unknown

COG id: COG1529

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI71773480, Length=761, Percent_Identity=22.9960578186597, Blast_Score=132, Evalue=1e-30,
Organism=Homo sapiens, GI91823271, Length=764, Percent_Identity=22.6439790575916, Blast_Score=120, Evalue=5e-27,
Organism=Escherichia coli, GI1786478, Length=737, Percent_Identity=37.0420624151967, Blast_Score=414, Evalue=1e-116,
Organism=Escherichia coli, GI1789230, Length=752, Percent_Identity=26.063829787234, Blast_Score=224, Evalue=2e-59,
Organism=Escherichia coli, GI1789246, Length=794, Percent_Identity=23.6775818639798, Blast_Score=173, Evalue=4e-44,
Organism=Caenorhabditis elegans, GI17540638, Length=740, Percent_Identity=22.8378378378378, Blast_Score=117, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17539860, Length=750, Percent_Identity=20.9333333333333, Blast_Score=108, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI32566215, Length=696, Percent_Identity=20.1149425287356, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24647199, Length=716, Percent_Identity=22.7653631284916, Blast_Score=125, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24647201, Length=710, Percent_Identity=21.9718309859155, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI17737937, Length=698, Percent_Identity=22.7793696275072, Blast_Score=91, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000674
- InterPro:   IPR008274 [H]

Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 79553; Mature: 79422

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKQHSIIGAGVPRIDGPDKLAGRANYAADNLPADMAYGYGVFSTIAKGKVARIKVDEA
CCCCCCCEEECCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHH
KRMPGVIDIFHHGHFPSLYRTPSSFAQGNKVEETRLPFEDERVYYEGQFVALVVADSFEN
HCCCCEEEEECCCCCCHHHCCCHHHHCCCCCHHHCCCCCCCEEEECCCEEEEEEECCCCH
ARAAARHVEVEYASESAVANLAQGLDDNGTQAGSGNHSRGDASGAFEDAAASIDVTYHTP
HHHHHHEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEEECC
VETHNPMEMHASVAYWDAQGNLTIYDASQGVVVERNALSKIFAIAPERITVHAPYIGSGF
CCCCCCHHHEEEEEEEECCCCEEEEECCCCEEEEHHHHHHHHHCCCCEEEEECCCCCCCC
GSKLWTWPHAVATAAVAREVGRPVQLVVPRQQMFTTTGHRPETRQRMRLATDANGRLVSL
CCCCCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHCCCCCCCHHHHHHHEECCCCCEEEE
RHESINTTSFTDQYVETCGSVTKSLYSCPNLTVSHATTQVNRGTPTSMRAPGAAPGLFAL
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCEEECCCCCCCCCCCCCCCCCHHHH
ESAIDEMALAAGVDPVQFRLDNYAERDESQDLDFSSNHIVEATNRAAETFGWADRNPRIG
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCC
SMREGREIIGYGMAACNWEALKRPCDARVSLRADGTAFASCATQDIGTGTYTIVAQAVSD
CHHCCCHHHHCCHHHCCHHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHH
VTGIPIDRITVKLGDSSYPDGPISGGSWATATTLPAIAGAARNALDEMKRYATGDNGVFA
HCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
GASSDELDVVDGGLRNAGGKQASFAEVLDAARYGSADGEAHTEAADSQYSYRSFGAHFVE
CCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHCCCEEEE
VRWDPGISHLRVSRVVSAIDVGRVINETTARNQVEGAVVMGIGMGLFEATEYDERNGRPV
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCCC
NNDYAEYVVPVHADQPEIDVILLDYPDLAFNEYGARGIGEIGITGLAAAIGNAVHHATGK
CCCCCCEEEEEECCCCCEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RIRELPITLDKLMDDVPQAQSA
HHHHCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDKQHSIIGAGVPRIDGPDKLAGRANYAADNLPADMAYGYGVFSTIAKGKVARIKVDEA
CCCCCCEEECCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHH
KRMPGVIDIFHHGHFPSLYRTPSSFAQGNKVEETRLPFEDERVYYEGQFVALVVADSFEN
HCCCCEEEEECCCCCCHHHCCCHHHHCCCCCHHHCCCCCCCEEEECCCEEEEEEECCCCH
ARAAARHVEVEYASESAVANLAQGLDDNGTQAGSGNHSRGDASGAFEDAAASIDVTYHTP
HHHHHHEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEEECC
VETHNPMEMHASVAYWDAQGNLTIYDASQGVVVERNALSKIFAIAPERITVHAPYIGSGF
CCCCCCHHHEEEEEEEECCCCEEEEECCCCEEEEHHHHHHHHHCCCCEEEEECCCCCCCC
GSKLWTWPHAVATAAVAREVGRPVQLVVPRQQMFTTTGHRPETRQRMRLATDANGRLVSL
CCCCCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHCCCCCCCHHHHHHHEECCCCCEEEE
RHESINTTSFTDQYVETCGSVTKSLYSCPNLTVSHATTQVNRGTPTSMRAPGAAPGLFAL
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCEEECCCCCCCCCCCCCCCCCHHHH
ESAIDEMALAAGVDPVQFRLDNYAERDESQDLDFSSNHIVEATNRAAETFGWADRNPRIG
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCC
SMREGREIIGYGMAACNWEALKRPCDARVSLRADGTAFASCATQDIGTGTYTIVAQAVSD
CHHCCCHHHHCCHHHCCHHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHH
VTGIPIDRITVKLGDSSYPDGPISGGSWATATTLPAIAGAARNALDEMKRYATGDNGVFA
HCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
GASSDELDVVDGGLRNAGGKQASFAEVLDAARYGSADGEAHTEAADSQYSYRSFGAHFVE
CCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHCCCEEEE
VRWDPGISHLRVSRVVSAIDVGRVINETTARNQVEGAVVMGIGMGLFEATEYDERNGRPV
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCCC
NNDYAEYVVPVHADQPEIDVILLDYPDLAFNEYGARGIGEIGITGLAAAIGNAVHHATGK
CCCCCCEEEEEECCCCCEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RIRELPITLDKLMDDVPQAQSA
HHHHCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]