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The map label for this gene is selU

Identifier: 92112645

GI number: 92112645

Start: 569771

End: 570856

Strand: Direct

Name: selU

Synonym: Csal_0512

Alternate gene names: 92112645

Gene position: 569771-570856 (Clockwise)

Preceding gene: 92112644

Following gene: 92112647

Centisome position: 15.41

GC content: 66.39

Gene sequence:

>1086_bases
GTGAGCCTGCCGCACCTCGCACCGGAGATGGCCCTGCTCGAACGTCCCCTGATCGATGTGCGTGCCCCGGTGGAGTTCGC
CAGGGGCGCCTTGCCCGGGGCCGTCAACCTTCCCCTGATGGACGATGCCGAGCGGCACGCCGTGGGCATCCGCTACAAGG
AAGCCGGCCAGGGAGCCGCCATCGCGCTGGGCGAGCGCCTGGTCGACGGTGACCTCAAGGCGCGTCGCGTGGCGGCTTGG
CGGGCCTTTGCCGAGCGTCATCCCGATGCCGTGATCTACTGTTTCCGGGGTGGCTTGCGTTCACGCATCGCGCAGCAATG
GCTACAGGAGGCAGGCATCACGCTGCCTCGCATCCAGGGCGGCTGGAAGGCCATGCGCCAGTGCGTGAACGCCGAGATCG
AGGCGGCGGCCGCGCGCCCTGTGCTGGTCGTCGCCGGCCTGACCGGTTGCGCCAAGACCGAGCTGGTCCAGTCCCTCGAC
GTCGGTATCGACCTGGAAGGTCATGCCCGGCACAAAGGATCGGCGTTCGGTCGGCATCCCCTGCAAGGCCCCTCGCAGAT
CGATTTCGAACATGCGCTGGGCGCGGCGCTGTCGCATGCCACGCACGGCTGCGTGGTGGAAGACGAGTCGCGCATGATCG
GGCAGTTGGATATCCCCCTGTCCTTCTGGCAGACCATGGAAACGGCCCCCCGCATTCGGGTGGAGATGCCGCTGGACTGG
CGCCTCGAGCAGATTCGCAAGGACTATATCGATACCCTGTGGCGGACCTATCGCGATCATTACGGGGAATGGCTGGGCTG
GTCGCTCATGCGCAAGCAGCTTTCCAGTGCCCTCAAGCGCGTGCGCAAGCGCTTGGGAAGCGCGCGCTTCCAGCGCCTGC
AACGCCTGCAGGCGCTGGCCTTTCGCGAGCACCAGCGTGGCAACACCCAGGCGCATGAAGCCTGGCTCGCGCCCTTGATG
CTCGAATACTACGATCCCATGTATCGCTACCAGCTCGAGCAGTCACCGTATGAGGCCTTGCATGTCGGTGACTGGGAGAG
CTGTCTGGCGTTCGCGCGTGACTGGTCGGCTGCGCTGCCTCGCTAG

Upstream 100 bases:

>100_bases
CGGACGATGTCGAACGCATCGGGCGTCAGCATGGCCTCGCGCTGGAAGCTTTCGGCGAAATGCGGCCTGCTGACGGTGCC
AGCCTGATCGAGGTGCGCGG

Downstream 100 bases:

>100_bases
TGCTTGCTGTCACGGCGTGCGTGCATGGCGCATCCAGTCGACCATCACGCGGTCGAGCAAGGGGGCCAGACGGTCGAAGC
GACGCGGATTCTCGAGTACC

Product: tRNA 2-selenouridine synthase

Products: NA

Alternate protein names: Selenophosphate-dependent tRNA 2-selenouridine synthase

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MSLPHLAPEMALLERPLIDVRAPVEFARGALPGAVNLPLMDDAERHAVGIRYKEAGQGAAIALGERLVDGDLKARRVAAW
RAFAERHPDAVIYCFRGGLRSRIAQQWLQEAGITLPRIQGGWKAMRQCVNAEIEAAAARPVLVVAGLTGCAKTELVQSLD
VGIDLEGHARHKGSAFGRHPLQGPSQIDFEHALGAALSHATHGCVVEDESRMIGQLDIPLSFWQTMETAPRIRVEMPLDW
RLEQIRKDYIDTLWRTYRDHYGEWLGWSLMRKQLSSALKRVRKRLGSARFQRLQRLQALAFREHQRGNTQAHEAWLAPLM
LEYYDPMYRYQLEQSPYEALHVGDWESCLAFARDWSAALPR

Sequences:

>Translated_361_residues
MSLPHLAPEMALLERPLIDVRAPVEFARGALPGAVNLPLMDDAERHAVGIRYKEAGQGAAIALGERLVDGDLKARRVAAW
RAFAERHPDAVIYCFRGGLRSRIAQQWLQEAGITLPRIQGGWKAMRQCVNAEIEAAAARPVLVVAGLTGCAKTELVQSLD
VGIDLEGHARHKGSAFGRHPLQGPSQIDFEHALGAALSHATHGCVVEDESRMIGQLDIPLSFWQTMETAPRIRVEMPLDW
RLEQIRKDYIDTLWRTYRDHYGEWLGWSLMRKQLSSALKRVRKRLGSARFQRLQRLQALAFREHQRGNTQAHEAWLAPLM
LEYYDPMYRYQLEQSPYEALHVGDWESCLAFARDWSAALPR
>Mature_360_residues
SLPHLAPEMALLERPLIDVRAPVEFARGALPGAVNLPLMDDAERHAVGIRYKEAGQGAAIALGERLVDGDLKARRVAAWR
AFAERHPDAVIYCFRGGLRSRIAQQWLQEAGITLPRIQGGWKAMRQCVNAEIEAAAARPVLVVAGLTGCAKTELVQSLDV
GIDLEGHARHKGSAFGRHPLQGPSQIDFEHALGAALSHATHGCVVEDESRMIGQLDIPLSFWQTMETAPRIRVEMPLDWR
LEQIRKDYIDTLWRTYRDHYGEWLGWSLMRKQLSSALKRVRKRLGSARFQRLQRLQALAFREHQRGNTQAHEAWLAPLML
EYYDPMYRYQLEQSPYEALHVGDWESCLAFARDWSAALPR

Specific function: Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA

COG id: COG2603

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain

Homologues:

Organism=Escherichia coli, GI1786712, Length=343, Percent_Identity=43.4402332361516, Blast_Score=269, Evalue=2e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SELU_CHRSD (Q1R084)

Other databases:

- EMBL:   CP000285
- RefSeq:   YP_572573.1
- ProteinModelPortal:   Q1R084
- SMR:   Q1R084
- STRING:   Q1R084
- GeneID:   4026982
- GenomeReviews:   CP000285_GR
- KEGG:   csa:Csal_0512
- NMPDR:   fig|290398.4.peg.104
- eggNOG:   COG2603
- HOGENOM:   HBG452364
- OMA:   NLPLMND
- ProtClustDB:   PRK11784
- BioCyc:   CSAL290398:CSAL_0512-MONOMER
- HAMAP:   MF_01622
- InterPro:   IPR001763
- InterPro:   IPR017582
- Gene3D:   G3DSA:3.40.250.10
- SMART:   SM00450
- TIGRFAMs:   TIGR03167

Pfam domain/function: PF00581 Rhodanese; SSF52821 Rhodanese-like

EC number: NA

Molecular weight: Translated: 40850; Mature: 40719

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50206 RHODANESE_3

Important sites: ACT_SITE 94-94

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPHLAPEMALLERPLIDVRAPVEFARGALPGAVNLPLMDDAERHAVGIRYKEAGQGAA
CCCCCCCHHHHHHHCCCHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHCCCEECCCCCCCE
IALGERLVDGDLKARRVAAWRAFAERHPDAVIYCFRGGLRSRIAQQWLQEAGITLPRIQG
EHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCC
GWKAMRQCVNAEIEAAAARPVLVVAGLTGCAKTELVQSLDVGIDLEGHARHKGSAFGRHP
HHHHHHHHHCCHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
LQGPSQIDFEHALGAALSHATHGCVVEDESRMIGQLDIPLSFWQTMETAPRIRVEMPLDW
CCCCCCCCHHHHHHHHHHHHCCCCEEECCCCHHEEECCCHHHHHHHHCCCCEEEECCHHH
RLEQIRKDYIDTLWRTYRDHYGEWLGWSLMRKQLSSALKRVRKRLGSARFQRLQRLQALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FREHQRGNTQAHEAWLAPLMLEYYDPMYRYQLEQSPYEALHVGDWESCLAFARDWSAALP
HHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHCCCCHHEEECCCHHHHHHHHHHHHHCCC
R
C
>Mature Secondary Structure 
SLPHLAPEMALLERPLIDVRAPVEFARGALPGAVNLPLMDDAERHAVGIRYKEAGQGAA
CCCCCCHHHHHHHCCCHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHCCCEECCCCCCCE
IALGERLVDGDLKARRVAAWRAFAERHPDAVIYCFRGGLRSRIAQQWLQEAGITLPRIQG
EHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCC
GWKAMRQCVNAEIEAAAARPVLVVAGLTGCAKTELVQSLDVGIDLEGHARHKGSAFGRHP
HHHHHHHHHCCHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
LQGPSQIDFEHALGAALSHATHGCVVEDESRMIGQLDIPLSFWQTMETAPRIRVEMPLDW
CCCCCCCCHHHHHHHHHHHHCCCCEEECCCCHHEEECCCHHHHHHHHCCCCEEEECCHHH
RLEQIRKDYIDTLWRTYRDHYGEWLGWSLMRKQLSSALKRVRKRLGSARFQRLQRLQALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FREHQRGNTQAHEAWLAPLMLEYYDPMYRYQLEQSPYEALHVGDWESCLAFARDWSAALP
HHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHCCCCHHEEECCCHHHHHHHHHHHHHCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA