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The map label for this gene is radA [H]

Identifier: 92112643

GI number: 92112643

Start: 567306

End: 568682

Strand: Direct

Name: radA [H]

Synonym: Csal_0510

Alternate gene names: 92112643

Gene position: 567306-568682 (Clockwise)

Preceding gene: 92112642

Following gene: 92112644

Centisome position: 15.35

GC content: 65.94

Gene sequence:

>1377_bases
ATGGCCAAGGCGAAGAGCGCCTTCGTGTGCACCGAGTGCGGTGCCGAATACAGCAAGTGGCAGGGGCAGTGTTCGAGCTG
CCGGGAATGGAACACGCTCAGTGAAGTGCGTCTGGGCAGTGCCCGGCCGCATGCGCCGTCGCCGTCCACCACCGGGCGCA
GCGGTTACGCGGGCCTGGTCTCGCGCGAGGTGGTCGATCTGGGGGAGGTCGACCTGACCGAGGTGCCGCGCTTTTCTTCC
ACCTTCGGGGAGTTCGACCGGGTGCTGGGTGGCGGTCTCGTGCCGGGCTCGGCGGTGTTGCTGGGGGGGAACCCCGGGGC
CGGCAAGTCGACCCTGTTGCTGCAGACCGCCTGCAAGCTGGCGCAGTCTCACAAGGTGTTGTATGTCACCGGCGAGGAGT
CGCTCTCGCAGGTCGCCATGCGTGCGCACCGACTTCAGTTGCCGGTCAAGGGCCTCAACATGCTGGCCGAGACCAGCATC
GAAACGGTGCTTGCGGTCGCCGAGCGTGAAAAGCCCGCCGTCCTGATCATCGACTCGATACAGACCATGCACCTCGAGGA
CATCAGCTCGGCACCCGGCGGCGTGGCGCAAGTGCGCGAGTCGTCGGCGGCGTTGACGCGTTTCGCCAAGCAGAGCAACA
CCGTGCTGATGCTGGTGGGACACGTGACCAAGGATGGCACGCTGGCCGGCCCCAAGGTGCTGGAGCACATGATCGATGCC
TCGTTGCTGCTCGAGGGCGGCGCGGACTCGCGTTTTCGCACCCTGCGGGGGCAGAAGAATCGCTTCGGCGCGGTCAACGA
GCTGGGCGTTTTCGCCATGCTCGAGCACGGCCTCAAGGAAGTGAAGAACCCCAGCGCGATCTTCCTGTCACGCGCCGAAG
AACAGGCGCCCGGCAGTCTGGTGATGGTGGTCTGGGAGGGGACGCGGCCGATTCTCGTCGAGGTTCAGGCATTGCTCGAC
GAATCGGCCCTGGGCAACCCGCGCCGTGTGGCCGTGGGCCTCGATCAGAACCGTCTGGCCATGCTGCTGGCCGTGTTGCA
CAAGCATGGCGGCCTGTTCACCGGCGACCAGGACGTCTTTCTCAATGTGGTCGGTGGCGTCAAGGTGCTCGAAACCAGCG
CGGACCTGGCGGTGCTGCTGGCCGTCGTCTCCAGCCTGCAGAACCGCCATCTGCCACGTGAACTGGTGGCCTTCGGCGAG
GTCGGGCTCTCCGGCGAGATACGCCCCGTGCCCAGTGGTCAGGAACGCATCGTCGAGGCGGCGAAACATGGTTTCAAGCG
TGCCATCGTGCCGCGTGCCAACGCCCCCAAGCAAGCGCCCGAGGGTATGGAAGTGATCGCCGTCGACAAGCTTGCCGATG
CCCTGGACGCCCTGTAA

Upstream 100 bases:

>100_bases
GCCTCCGGGCCGCCTTTTGCGTGTCTGGCCGGCGGCCGGGCATACCGTGTGGTCCCGGGCGGCAATGATAGAATGCCGGT
AATCAGCGAGGAGCGACGAC

Downstream 100 bases:

>100_bases
ACGCCGGCGTGCCGGTCATGTAGAATGAGGGAAACCCTTGCCAAGGAGTGCTGCATGAGTGCCATCCGCCTGACGCAATA
CAGCCACGGCGCCGGTTGTG

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms [H]

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MAKAKSAFVCTECGAEYSKWQGQCSSCREWNTLSEVRLGSARPHAPSPSTTGRSGYAGLVSREVVDLGEVDLTEVPRFSS
TFGEFDRVLGGGLVPGSAVLLGGNPGAGKSTLLLQTACKLAQSHKVLYVTGEESLSQVAMRAHRLQLPVKGLNMLAETSI
ETVLAVAEREKPAVLIIDSIQTMHLEDISSAPGGVAQVRESSAALTRFAKQSNTVLMLVGHVTKDGTLAGPKVLEHMIDA
SLLLEGGADSRFRTLRGQKNRFGAVNELGVFAMLEHGLKEVKNPSAIFLSRAEEQAPGSLVMVVWEGTRPILVEVQALLD
ESALGNPRRVAVGLDQNRLAMLLAVLHKHGGLFTGDQDVFLNVVGGVKVLETSADLAVLLAVVSSLQNRHLPRELVAFGE
VGLSGEIRPVPSGQERIVEAAKHGFKRAIVPRANAPKQAPEGMEVIAVDKLADALDAL

Sequences:

>Translated_458_residues
MAKAKSAFVCTECGAEYSKWQGQCSSCREWNTLSEVRLGSARPHAPSPSTTGRSGYAGLVSREVVDLGEVDLTEVPRFSS
TFGEFDRVLGGGLVPGSAVLLGGNPGAGKSTLLLQTACKLAQSHKVLYVTGEESLSQVAMRAHRLQLPVKGLNMLAETSI
ETVLAVAEREKPAVLIIDSIQTMHLEDISSAPGGVAQVRESSAALTRFAKQSNTVLMLVGHVTKDGTLAGPKVLEHMIDA
SLLLEGGADSRFRTLRGQKNRFGAVNELGVFAMLEHGLKEVKNPSAIFLSRAEEQAPGSLVMVVWEGTRPILVEVQALLD
ESALGNPRRVAVGLDQNRLAMLLAVLHKHGGLFTGDQDVFLNVVGGVKVLETSADLAVLLAVVSSLQNRHLPRELVAFGE
VGLSGEIRPVPSGQERIVEAAKHGFKRAIVPRANAPKQAPEGMEVIAVDKLADALDAL
>Mature_457_residues
AKAKSAFVCTECGAEYSKWQGQCSSCREWNTLSEVRLGSARPHAPSPSTTGRSGYAGLVSREVVDLGEVDLTEVPRFSST
FGEFDRVLGGGLVPGSAVLLGGNPGAGKSTLLLQTACKLAQSHKVLYVTGEESLSQVAMRAHRLQLPVKGLNMLAETSIE
TVLAVAEREKPAVLIIDSIQTMHLEDISSAPGGVAQVRESSAALTRFAKQSNTVLMLVGHVTKDGTLAGPKVLEHMIDAS
LLLEGGADSRFRTLRGQKNRFGAVNELGVFAMLEHGLKEVKNPSAIFLSRAEEQAPGSLVMVVWEGTRPILVEVQALLDE
SALGNPRRVAVGLDQNRLAMLLAVLHKHGGLFTGDQDVFLNVVGGVKVLETSADLAVLLAVVSSLQNRHLPRELVAFGEV
GLSGEIRPVPSGQERIVEAAKHGFKRAIVPRANAPKQAPEGMEVIAVDKLADALDAL

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=459, Percent_Identity=69.4989106753813, Blast_Score=657, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 48660; Mature: 48528

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAKSAFVCTECGAEYSKWQGQCSSCREWNTLSEVRLGSARPHAPSPSTTGRSGYAGLV
CCCCCCCEEEHHCCCHHHHHCCCHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHH
SREVVDLGEVDLTEVPRFSSTFGEFDRVLGGGLVPGSAVLLGGNPGAGKSTLLLQTACKL
HHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHH
AQSHKVLYVTGEESLSQVAMRAHRLQLPVKGLNMLAETSIETVLAVAEREKPAVLIIDSI
HHCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
QTMHLEDISSAPGGVAQVRESSAALTRFAKQSNTVLMLVGHVTKDGTLAGPKVLEHMIDA
CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHCH
SLLLEGGADSRFRTLRGQKNRFGAVNELGVFAMLEHGLKEVKNPSAIFLSRAEEQAPGSL
HHEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCE
VMVVWEGTRPILVEVQALLDESALGNPRRVAVGLDQNRLAMLLAVLHKHGGLFTGDQDVF
EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHE
LNVVGGVKVLETSADLAVLLAVVSSLQNRHLPRELVAFGEVGLSGEIRPVPSGQERIVEA
EEECCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHH
AKHGFKRAIVPRANAPKQAPEGMEVIAVDKLADALDAL
HHHCHHEECCCCCCCCCCCCCCCEEEEHHHHHHHHHCC
>Mature Secondary Structure 
AKAKSAFVCTECGAEYSKWQGQCSSCREWNTLSEVRLGSARPHAPSPSTTGRSGYAGLV
CCCCCCEEEHHCCCHHHHHCCCHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHH
SREVVDLGEVDLTEVPRFSSTFGEFDRVLGGGLVPGSAVLLGGNPGAGKSTLLLQTACKL
HHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHH
AQSHKVLYVTGEESLSQVAMRAHRLQLPVKGLNMLAETSIETVLAVAEREKPAVLIIDSI
HHCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
QTMHLEDISSAPGGVAQVRESSAALTRFAKQSNTVLMLVGHVTKDGTLAGPKVLEHMIDA
CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHCH
SLLLEGGADSRFRTLRGQKNRFGAVNELGVFAMLEHGLKEVKNPSAIFLSRAEEQAPGSL
HHEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCE
VMVVWEGTRPILVEVQALLDESALGNPRRVAVGLDQNRLAMLLAVLHKHGGLFTGDQDVF
EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHE
LNVVGGVKVLETSADLAVLLAVVSSLQNRHLPRELVAFGEVGLSGEIRPVPSGQERIVEA
EEECCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHH
AKHGFKRAIVPRANAPKQAPEGMEVIAVDKLADALDAL
HHHCHHEECCCCCCCCCCCCCCCEEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1327967; 8759876; 7610040; 9278503 [H]