Click here to switch to the map view.

The map label for this gene is nrdI

Identifier: 92112511

GI number: 92112511

Start: 421884

End: 422288

Strand: Direct

Name: nrdI

Synonym: Csal_0378

Alternate gene names: 92112511

Gene position: 421884-422288 (Clockwise)

Preceding gene: 92112510

Following gene: 92112512

Centisome position: 11.41

GC content: 65.19

Gene sequence:

>405_bases
ATGTGCGACGTGGTGTATTTTTCCACCCAGTCGGGCAACACGCGGCGCTTCGTCGAAAAGCTGGACGTGCCGGCCCAGCG
CATTCCGCGTAGCCGCAACGACGCACCGCTGCGCGTGACGCGCCCCTATGTGCTGATCTTGCCGACGTACGGCGATGGCG
ACCCACGTACGGCGGTGCCGGGCCCGGTGATCCGTTTCTTGAACGATCCCCGCAATCGCGCCTTGATTCAGGGCGTGGTG
GCCGGCGGCAACACCAACTTCGGTGCCGCCTTCGGCCTGGCCGGTCGCGTGGTGGCGCACAAGTGCGAGGTGCCGTTGCT
GCACCGCTTCGAATTGATGGGAACGCCCGAGGATGTCGCCAAGGTGCGCGCGTGCCTGGCGATGGAGATGACAGATGTTG
GATGA

Upstream 100 bases:

>100_bases
ATCGTCAGCTGCCGGTGGTGGTGACGCCCGATGAGCAACACTGGTCCGGATTTCGTCCCGAGTTGATTCGTCAGCTGGCG
TGAGCATGCAGGGGGGCAAC

Downstream 100 bases:

>100_bases
CACCGTGGAACTCACCGAGAAGACACCCGCCGTCGAGGCGAGCCGGGCGACGCAGACGCTGGATTACCATGCGCTCAATG
CGATGCTCAATCTCTACGAC

Product: nrdI protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MCDVVYFSTQSGNTRRFVEKLDVPAQRIPRSRNDAPLRVTRPYVLILPTYGDGDPRTAVPGPVIRFLNDPRNRALIQGVV
AGGNTNFGAAFGLAGRVVAHKCEVPLLHRFELMGTPEDVAKVRACLAMEMTDVG

Sequences:

>Translated_134_residues
MCDVVYFSTQSGNTRRFVEKLDVPAQRIPRSRNDAPLRVTRPYVLILPTYGDGDPRTAVPGPVIRFLNDPRNRALIQGVV
AGGNTNFGAAFGLAGRVVAHKCEVPLLHRFELMGTPEDVAKVRACLAMEMTDVG
>Mature_134_residues
MCDVVYFSTQSGNTRRFVEKLDVPAQRIPRSRNDAPLRVTRPYVLILPTYGDGDPRTAVPGPVIRFLNDPRNRALIQGVV
AGGNTNFGAAFGLAGRVVAHKCEVPLLHRFELMGTPEDVAKVRACLAMEMTDVG

Specific function: Probably involved in ribonucleotide reductase function

COG id: COG1780

COG function: function code F; Protein involved in ribonucleotide reduction

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrdI family

Homologues:

Organism=Escherichia coli, GI1789029, Length=123, Percent_Identity=56.0975609756098, Blast_Score=142, Evalue=8e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NRDI_CHRSD (Q1R0L8)

Other databases:

- EMBL:   CP000285
- RefSeq:   YP_572439.1
- ProteinModelPortal:   Q1R0L8
- STRING:   Q1R0L8
- GeneID:   4026557
- GenomeReviews:   CP000285_GR
- KEGG:   csa:Csal_0378
- NMPDR:   fig|290398.4.peg.456
- eggNOG:   COG1780
- HOGENOM:   HBG697191
- OMA:   FELMGTA
- BioCyc:   CSAL290398:CSAL_0378-MONOMER
- HAMAP:   MF_00128
- InterPro:   IPR020852
- InterPro:   IPR004465
- PIRSF:   PIRSF005087
- TIGRFAMs:   TIGR00333

Pfam domain/function: PF07972 Flavodoxin_NdrI

EC number: NA

Molecular weight: Translated: 14665; Mature: 14665

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCDVVYFSTQSGNTRRFVEKLDVPAQRIPRSRNDAPLRVTRPYVLILPTYGDGDPRTAVP
CCEEEEEECCCCCHHHHHHHHCCCHHHCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCC
GPVIRFLNDPRNRALIQGVVAGGNTNFGAAFGLAGRVVAHKCEVPLLHRFELMGTPEDVA
CHHHHHHCCCCCCEEEEEEEECCCCCCCHHHCCCCHHHHHCCCCCHHEHEEECCCHHHHH
KVRACLAMEMTDVG
HHHHHHHHHHCCCC
>Mature Secondary Structure
MCDVVYFSTQSGNTRRFVEKLDVPAQRIPRSRNDAPLRVTRPYVLILPTYGDGDPRTAVP
CCEEEEEECCCCCHHHHHHHHCCCHHHCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCC
GPVIRFLNDPRNRALIQGVVAGGNTNFGAAFGLAGRVVAHKCEVPLLHRFELMGTPEDVA
CHHHHHHCCCCCCEEEEEEEECCCCCCCHHHCCCCHHHHHCCCCCHHEHEEECCCHHHHH
KVRACLAMEMTDVG
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA