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The map label for this gene is ycjO [C]

Identifier: 92112394

GI number: 92112394

Start: 295969

End: 296943

Strand: Direct

Name: ycjO [C]

Synonym: Csal_0259

Alternate gene names: 92112394

Gene position: 295969-296943 (Clockwise)

Preceding gene: 92112393

Following gene: 92112395

Centisome position: 8.01

GC content: 58.36

Gene sequence:

>975_bases
ATGACCGCTAGCAATTCTGTTGCAACCCATCCCCCGGCGGTAACGCGCCGGGGCCGCCGACAGGGCACCAAGGTGCGTCG
TCAGCGCGTGCGAGCTGCCTGGCTGTTCCTGGTGCCAATGCTCGTCACCCTGGCAATGGTTGCCGGCTGGCCGCTGTTGC
GTACGTTCTACTTCAGTTTCACCGACGCCTCGCTGGCGGATACGGGGGAAGCCAACTTCATAGGCTTCGAGAACTATCTG
GGATATTACCAGGGAGCCTGGTACGGCCTGCTGACCGATTCCGCCTGGTGGCAGTCGGTCTGGAACACGCTGTTCTTTAG
TGTCGTGTCAGTGTCGCTGGAGACGGTCTTCGGCATCATCGTCGCCTTGATCCTCAATGCCGAGTTCAAGGGACGCATGC
TGGTGCGTGCTGCCGTGCTCATCCCCTGGGCGATTCCCACCATCGTGTCGGCCAAGATGTGGGCGTGGATGCTCAACGAT
CAGTTCGGCATCATCAACCATCTGCTGATGTTGCTGGGCCTGATCGATGCCCCCCTGGCCTGGACTGCCGACGCCGATCT
GTCGATGTGGGCGGTGATCATCGTCGATGTGTGGAAGACGATTCCCTTCGTTGCCCTGCTGGTACTGGCGGCACTGCAAA
TGCTGCCTCGGGATTGCTACGAAGCCGCCGAGGTCGATGGTATCCACCCGATCAAGGTGTTTTTCCGGGTGACATTACCC
TTGATCACACCTGCGTTGCTGGTGGCAGTGATCTTCCGCCTGCTGGATGCACTGCGCGTGTTCGACGTGATTTACGTACT
GACTTCCAATTCCACCAGCACCATGACGATGTCGATATACGCACGTCAGCAACTGGTGGAGTTTCAAGATGTGGGCTATG
GCAGTGCTGCCTCGACCTTGCTGTTTTTGATCATCGCCTTGGCCACCGTGATTTATCTCTATCTGGGGCGTCGTCAGCTG
GGAGGTGATGAATGA

Upstream 100 bases:

>100_bases
GACGTGCTTGCCGGCAACATGAACGGTGCCCGGGCGGTATCGCAACTGCAGGACAAGCTCGAGCGCATGAAGCGCCGCCG
CTGGTAACCCGAGGCCTGCC

Downstream 100 bases:

>100_bases
ATACCAGATTCGCCAAGTCTCTTGCCAAGCGTATCGGGTTTTGGTCGTTGATCGCGGTGTTGCTGATTTATGCCGTCTTT
CCCTTTTACTACGCGGTGAT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MTASNSVATHPPAVTRRGRRQGTKVRRQRVRAAWLFLVPMLVTLAMVAGWPLLRTFYFSFTDASLADTGEANFIGFENYL
GYYQGAWYGLLTDSAWWQSVWNTLFFSVVSVSLETVFGIIVALILNAEFKGRMLVRAAVLIPWAIPTIVSAKMWAWMLND
QFGIINHLLMLLGLIDAPLAWTADADLSMWAVIIVDVWKTIPFVALLVLAALQMLPRDCYEAAEVDGIHPIKVFFRVTLP
LITPALLVAVIFRLLDALRVFDVIYVLTSNSTSTMTMSIYARQQLVEFQDVGYGSAASTLLFLIIALATVIYLYLGRRQL
GGDE

Sequences:

>Translated_324_residues
MTASNSVATHPPAVTRRGRRQGTKVRRQRVRAAWLFLVPMLVTLAMVAGWPLLRTFYFSFTDASLADTGEANFIGFENYL
GYYQGAWYGLLTDSAWWQSVWNTLFFSVVSVSLETVFGIIVALILNAEFKGRMLVRAAVLIPWAIPTIVSAKMWAWMLND
QFGIINHLLMLLGLIDAPLAWTADADLSMWAVIIVDVWKTIPFVALLVLAALQMLPRDCYEAAEVDGIHPIKVFFRVTLP
LITPALLVAVIFRLLDALRVFDVIYVLTSNSTSTMTMSIYARQQLVEFQDVGYGSAASTLLFLIIALATVIYLYLGRRQL
GGDE
>Mature_323_residues
TASNSVATHPPAVTRRGRRQGTKVRRQRVRAAWLFLVPMLVTLAMVAGWPLLRTFYFSFTDASLADTGEANFIGFENYLG
YYQGAWYGLLTDSAWWQSVWNTLFFSVVSVSLETVFGIIVALILNAEFKGRMLVRAAVLIPWAIPTIVSAKMWAWMLNDQ
FGIINHLLMLLGLIDAPLAWTADADLSMWAVIIVDVWKTIPFVALLVLAALQMLPRDCYEAAEVDGIHPIKVFFRVTLPL
ITPALLVAVIFRLLDALRVFDVIYVLTSNSTSTMTMSIYARQQLVEFQDVGYGSAASTLLFLIIALATVIYLYLGRRQLG
GDE

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=277, Percent_Identity=31.4079422382672, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1790465, Length=235, Percent_Identity=28.5106382978723, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789861, Length=310, Percent_Identity=29.0322580645161, Blast_Score=98, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36226; Mature: 36095

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASNSVATHPPAVTRRGRRQGTKVRRQRVRAAWLFLVPMLVTLAMVAGWPLLRTFYFSF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
TDASLADTGEANFIGFENYLGYYQGAWYGLLTDSAWWQSVWNTLFFSVVSVSLETVFGII
CCCCCCCCCCCCEEEHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALILNAEFKGRMLVRAAVLIPWAIPTIVSAKMWAWMLNDQFGIINHLLMLLGLIDAPLA
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
WTADADLSMWAVIIVDVWKTIPFVALLVLAALQMLPRDCYEAAEVDGIHPIKVFFRVTLP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LITPALLVAVIFRLLDALRVFDVIYVLTSNSTSTMTMSIYARQQLVEFQDVGYGSAASTL
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHH
LFLIIALATVIYLYLGRRQLGGDE
HHHHHHHHHHHHHHHCCHHCCCCC
>Mature Secondary Structure 
TASNSVATHPPAVTRRGRRQGTKVRRQRVRAAWLFLVPMLVTLAMVAGWPLLRTFYFSF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
TDASLADTGEANFIGFENYLGYYQGAWYGLLTDSAWWQSVWNTLFFSVVSVSLETVFGII
CCCCCCCCCCCCEEEHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALILNAEFKGRMLVRAAVLIPWAIPTIVSAKMWAWMLNDQFGIINHLLMLLGLIDAPLA
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
WTADADLSMWAVIIVDVWKTIPFVALLVLAALQMLPRDCYEAAEVDGIHPIKVFFRVTLP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LITPALLVAVIFRLLDALRVFDVIYVLTSNSTSTMTMSIYARQQLVEFQDVGYGSAASTL
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHH
LFLIIALATVIYLYLGRRQLGGDE
HHHHHHHHHHHHHHHCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]