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The map label for this gene is ybdK [C]

Identifier: 91785771

GI number: 91785771

Start: 4844410

End: 4845525

Strand: Reverse

Name: ybdK [C]

Synonym: Bxe_A0002

Alternate gene names: 91785771

Gene position: 4845525-4844410 (Counterclockwise)

Preceding gene: 91785772

Following gene: 91785770

Centisome position: 98.97

GC content: 59.14

Gene sequence:

>1116_bases
ATGTCACTCGAACCCTTCATCGATTCGAAACCGTTCACATTCGGTGTCGAACTCGAGATGCAGATCGTCAACACGCACGA
CTATGATCTGACCAAAGCCGGCTCGGATCTGCTGCGCCTCATCAAGGACGAAAAGATCCCCGGCAACATCACGCCGGAAA
TCACCGAAAGCATGATCGAGCTGTCGACCGGCATCTGCACGACGCATGAGCAGGCCGTCGCCGACTTGCGCAAGATTCGC
GATACGCTGGTTTCCGCGGCGGATCACCTGAACGTCGGCCTGTGCGGCGGCGGCACGCATGCGTTCCAGCAATGGAGCGA
GCGGCAGATCGTCGATACGCCGCGCTTTCAGTACCTCTCCGAGTTGTACGGCTATCTCGCCAAGCAATTCACGGTGTTCG
GCCAGCACGTGCATATCGGCTGTCCAGATCCGAACAGCGCGCTCTATCTGCTGCATTCCATGTCGCGCTTCATTCCGCAC
TTCATCGCGTTGTCCGCCTCGTCGCCGTTCGTGCAGGGTGTCGATACCGGCTTTCATTCGGCACGACTGAATTCCGTGTT
CGCGTTTCCGTTGTCGGGCCGGGCGCCATTCGTGTTGACGTGGGACAGTTTCGAGGAATATTTCTCGAAGATGGTCCACA
CCGGCGTGGTCAACAGCATGAAGGATTTTTACTGGGACATCCGGCCGAAGCCCGGTTTCGGCACGATCGAAGTGCGCGTG
ATGGACACGCCGCTGTCGGTGGATCGCGCGGCGGCGATTGCCTGCTACATCCAGACGCTTGCCCGGCATCTGCTGCTCGA
CAAGCCTATCTCGCCGAAGGAAGACGACTACCTCGTCTACACCTTCAATCGTTTCGAAGCATGCCGCTTTGGTCTCGCCG
GCACCTGCATCAATCCGCAAACGGGCGAACGCAAGACGATTTCCGAAGACATTCTCGAAACGCTCGACCGGATCGCTCCG
CACGCCGAAGCGTTGGGTTCGGGCAATGCGCTGGCCGAAATCGGTGCGATTGCACGCAGTCAGGTCAATGACGCGACGTG
GCTGCGCGGCGTCGTCGAACGGGAAAAGTCCTTGCACGAAGCCGTCAGGCAACAATGTCTGGAGTGGCGCGCCTAG

Upstream 100 bases:

>100_bases
ATACTCAAGACGCTTTATCAACCTGTATCCGATTCAAAAACGGCCGGGCATGTGGCCCGCACACGGACCCGCATCCGGCC
GAACTGACCTAGGGGACGCC

Downstream 100 bases:

>100_bases
CCGGAAACAGGATTGTTCGCGGCAAATCGTAAGAAAACCCGCCTCGAGCGGGTTTTTTTCAATAAATTAAATTCCAGCTC
GGCGTGTCCAAGGTTTTTAT

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MSLEPFIDSKPFTFGVELEMQIVNTHDYDLTKAGSDLLRLIKDEKIPGNITPEITESMIELSTGICTTHEQAVADLRKIR
DTLVSAADHLNVGLCGGGTHAFQQWSERQIVDTPRFQYLSELYGYLAKQFTVFGQHVHIGCPDPNSALYLLHSMSRFIPH
FIALSASSPFVQGVDTGFHSARLNSVFAFPLSGRAPFVLTWDSFEEYFSKMVHTGVVNSMKDFYWDIRPKPGFGTIEVRV
MDTPLSVDRAAAIACYIQTLARHLLLDKPISPKEDDYLVYTFNRFEACRFGLAGTCINPQTGERKTISEDILETLDRIAP
HAEALGSGNALAEIGAIARSQVNDATWLRGVVEREKSLHEAVRQQCLEWRA

Sequences:

>Translated_371_residues
MSLEPFIDSKPFTFGVELEMQIVNTHDYDLTKAGSDLLRLIKDEKIPGNITPEITESMIELSTGICTTHEQAVADLRKIR
DTLVSAADHLNVGLCGGGTHAFQQWSERQIVDTPRFQYLSELYGYLAKQFTVFGQHVHIGCPDPNSALYLLHSMSRFIPH
FIALSASSPFVQGVDTGFHSARLNSVFAFPLSGRAPFVLTWDSFEEYFSKMVHTGVVNSMKDFYWDIRPKPGFGTIEVRV
MDTPLSVDRAAAIACYIQTLARHLLLDKPISPKEDDYLVYTFNRFEACRFGLAGTCINPQTGERKTISEDILETLDRIAP
HAEALGSGNALAEIGAIARSQVNDATWLRGVVEREKSLHEAVRQQCLEWRA
>Mature_370_residues
SLEPFIDSKPFTFGVELEMQIVNTHDYDLTKAGSDLLRLIKDEKIPGNITPEITESMIELSTGICTTHEQAVADLRKIRD
TLVSAADHLNVGLCGGGTHAFQQWSERQIVDTPRFQYLSELYGYLAKQFTVFGQHVHIGCPDPNSALYLLHSMSRFIPHF
IALSASSPFVQGVDTGFHSARLNSVFAFPLSGRAPFVLTWDSFEEYFSKMVHTGVVNSMKDFYWDIRPKPGFGTIEVRVM
DTPLSVDRAAAIACYIQTLARHLLLDKPISPKEDDYLVYTFNRFEACRFGLAGTCINPQTGERKTISEDILETLDRIAPH
AEALGSGNALAEIGAIARSQVNDATWLRGVVEREKSLHEAVRQQCLEWRA

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=369, Percent_Identity=45.2574525745258, Blast_Score=353, Evalue=1e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 41504; Mature: 41372

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLEPFIDSKPFTFGVELEMQIVNTHDYDLTKAGSDLLRLIKDEKIPGNITPEITESMIE
CCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LSTGICTTHEQAVADLRKIRDTLVSAADHLNVGLCGGGTHAFQQWSERQIVDTPRFQYLS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHCCCCCCCCHHHHHHH
ELYGYLAKQFTVFGQHVHIGCPDPNSALYLLHSMSRFIPHFIALSASSPFVQGVDTGFHS
HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHH
ARLNSVFAFPLSGRAPFVLTWDSFEEYFSKMVHTGVVNSMKDFYWDIRPKPGFGTIEVRV
HHHCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEE
MDTPLSVDRAAAIACYIQTLARHLLLDKPISPKEDDYLVYTFNRFEACRFGLAGTCINPQ
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCC
TGERKTISEDILETLDRIAPHAEALGSGNALAEIGAIARSQVNDATWLRGVVEREKSLHE
CCCCHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
AVRQQCLEWRA
HHHHHHHHCCC
>Mature Secondary Structure 
SLEPFIDSKPFTFGVELEMQIVNTHDYDLTKAGSDLLRLIKDEKIPGNITPEITESMIE
CCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LSTGICTTHEQAVADLRKIRDTLVSAADHLNVGLCGGGTHAFQQWSERQIVDTPRFQYLS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHCCCCCCCCHHHHHHH
ELYGYLAKQFTVFGQHVHIGCPDPNSALYLLHSMSRFIPHFIALSASSPFVQGVDTGFHS
HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHH
ARLNSVFAFPLSGRAPFVLTWDSFEEYFSKMVHTGVVNSMKDFYWDIRPKPGFGTIEVRV
HHHCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEE
MDTPLSVDRAAAIACYIQTLARHLLLDKPISPKEDDYLVYTFNRFEACRFGLAGTCINPQ
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCC
TGERKTISEDILETLDRIAPHAEALGSGNALAEIGAIARSQVNDATWLRGVVEREKSLHE
CCCCHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
AVRQQCLEWRA
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA