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The map label for this gene is dppB [H]

Identifier: 91785594

GI number: 91785594

Start: 4649478

End: 4650488

Strand: Reverse

Name: dppB [H]

Synonym: Bxe_A0183

Alternate gene names: 91785594

Gene position: 4650488-4649478 (Counterclockwise)

Preceding gene: 91785595

Following gene: 91785593

Centisome position: 94.99

GC content: 64.49

Gene sequence:

>1011_bases
ATGTTCCGCTTTGTTTTGCGCCGCGTCGGCATGGTGATTCCGACCTTCATCGGCATCACGATCCTCGCGTTCGCGCTGAT
TCACCTGATACCGGGCGACCCCATCGAAGTGATGATGGGCGAGCGCGGCGTCGATCCCGCCATGCACGCCGTGGCGATGC
ACCGGCTCGGGCTCGACGAATCCCTGCCCATGCAGTACGTCCACTACATCGGGCGCGCGCTGCACGGCGACCTCGGCACC
TCGATCATCACCAACACCAGCGTGATGGGCGAATTCCTCGCACGCTTTCCCGCTACCGTCGAACTGTCGATCTGCGCGAT
GCTGTTCGCATTGATCGTCGGGTTGCCGGCGGGCGTGTTCGCGGCCTTGAGGCGCGGCACCGTGGTCGATCACGGCGTGA
TGGGCACGGCGCTCACCGGCTACTCGATGCCGATCTTCTGGTGGGGCTTGATCCTCATCATGGTGTTTTCCGTGAAGCTC
GGCTGGACGCCGGTGTCCGGCCGCATCGCGGTCGAATACGACATTCCGCACGTGACCGGCTTCATGCTGATCGACGCGAT
GATGTCGACCGACGAAGGCGCGTTCAGATCCGCGCTGAGCCATCTGATCCTGCCGGCCATCGTGCTCGGCACGATTCCGC
TGGCGGTCGTCGCGCGCATGACGCGTTCGTCGATGCTCGAAGTGCTGCGCGAGGACTACATCCGCACCGCGCGCGCGAAG
GGCCTGTCGCCGGGACGCGTGATCGTCGTGCATGCGTTGCGCAATGCGCTGATTCCGGTGGTGACCGTGATCGGTCTGCA
GGTCGGCACGCTGCTCGCGGGCGCGGTGCTGACCGAGACGCTGTTTTCGTGGCCGGGTATCGGCAAGTGGCTGATCGACG
CGATCGGCCGGCGCGACTATCCGGTGGTGCAGGGCGGTATCCTGATGATCGCCACGCTGGTCATTGTCGTGAACCTCGTC
GTCGATCTGCTGTACGGCGTGCTCAACCCGCGCATCCGCCATACGAGGTAA

Upstream 100 bases:

>100_bases
CGCACGGTTAGAAAACTGGTCGAAATGGTCCGGCGACCGGGGTCACAAGCCCTCGTCGCCGGTTGCGTTTTTTGTTCATC
AAGACCATAGGGACAAAACC

Downstream 100 bases:

>100_bases
TCACGATCATGGCAGACATACAAAACACAGTCCCCCAGTCGGTCACGCCCCCAAGCGGCCGCGCTATCGCCGCCCGTGAA
TTCTGGGCGAATTTCTCGCG

Product: dipeptide/oligopeptide/nickel ABC transporter inner membrane protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MFRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAVAMHRLGLDESLPMQYVHYIGRALHGDLGT
SIITNTSVMGEFLARFPATVELSICAMLFALIVGLPAGVFAALRRGTVVDHGVMGTALTGYSMPIFWWGLILIMVFSVKL
GWTPVSGRIAVEYDIPHVTGFMLIDAMMSTDEGAFRSALSHLILPAIVLGTIPLAVVARMTRSSMLEVLREDYIRTARAK
GLSPGRVIVVHALRNALIPVVTVIGLQVGTLLAGAVLTETLFSWPGIGKWLIDAIGRRDYPVVQGGILMIATLVIVVNLV
VDLLYGVLNPRIRHTR

Sequences:

>Translated_336_residues
MFRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAVAMHRLGLDESLPMQYVHYIGRALHGDLGT
SIITNTSVMGEFLARFPATVELSICAMLFALIVGLPAGVFAALRRGTVVDHGVMGTALTGYSMPIFWWGLILIMVFSVKL
GWTPVSGRIAVEYDIPHVTGFMLIDAMMSTDEGAFRSALSHLILPAIVLGTIPLAVVARMTRSSMLEVLREDYIRTARAK
GLSPGRVIVVHALRNALIPVVTVIGLQVGTLLAGAVLTETLFSWPGIGKWLIDAIGRRDYPVVQGGILMIATLVIVVNLV
VDLLYGVLNPRIRHTR
>Mature_336_residues
MFRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAVAMHRLGLDESLPMQYVHYIGRALHGDLGT
SIITNTSVMGEFLARFPATVELSICAMLFALIVGLPAGVFAALRRGTVVDHGVMGTALTGYSMPIFWWGLILIMVFSVKL
GWTPVSGRIAVEYDIPHVTGFMLIDAMMSTDEGAFRSALSHLILPAIVLGTIPLAVVARMTRSSMLEVLREDYIRTARAK
GLSPGRVIVVHALRNALIPVVTVIGLQVGTLLAGAVLTETLFSWPGIGKWLIDAIGRRDYPVVQGGILMIATLVIVVNLV
VDLLYGVLNPRIRHTR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=64.306784660767, Blast_Score=445, Evalue=1e-126,
Organism=Escherichia coli, GI1787053, Length=335, Percent_Identity=40.5970149253731, Blast_Score=256, Evalue=1e-69,
Organism=Escherichia coli, GI1787761, Length=316, Percent_Identity=46.8354430379747, Blast_Score=236, Evalue=1e-63,
Organism=Escherichia coli, GI1787550, Length=339, Percent_Identity=36.8731563421829, Blast_Score=214, Evalue=5e-57,
Organism=Escherichia coli, GI1789888, Length=336, Percent_Identity=35.1190476190476, Blast_Score=208, Evalue=3e-55,
Organism=Escherichia coli, GI1787497, Length=335, Percent_Identity=34.3283582089552, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1788504, Length=370, Percent_Identity=24.8648648648649, Blast_Score=124, Evalue=8e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36508; Mature: 36508

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAVAMHRLGLDE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCC
SLPMQYVHYIGRALHGDLGTSIITNTSVMGEFLARFPATVELSICAMLFALIVGLPAGVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHH
AALRRGTVVDHGVMGTALTGYSMPIFWWGLILIMVFSVKLGWTPVSGRIAVEYDIPHVTG
HHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
FMLIDAMMSTDEGAFRSALSHLILPAIVLGTIPLAVVARMTRSSMLEVLREDYIRTARAK
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLSPGRVIVVHALRNALIPVVTVIGLQVGTLLAGAVLTETLFSWPGIGKWLIDAIGRRDY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
PVVQGGILMIATLVIVVNLVVDLLYGVLNPRIRHTR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFRFVLRRVGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGVDPAMHAVAMHRLGLDE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCC
SLPMQYVHYIGRALHGDLGTSIITNTSVMGEFLARFPATVELSICAMLFALIVGLPAGVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHH
AALRRGTVVDHGVMGTALTGYSMPIFWWGLILIMVFSVKLGWTPVSGRIAVEYDIPHVTG
HHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
FMLIDAMMSTDEGAFRSALSHLILPAIVLGTIPLAVVARMTRSSMLEVLREDYIRTARAK
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLSPGRVIVVHALRNALIPVVTVIGLQVGTLLAGAVLTETLFSWPGIGKWLIDAIGRRDY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
PVVQGGILMIATLVIVVNLVVDLLYGVLNPRIRHTR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]