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The map label for this gene is pobR [H]

Identifier: 91785512

GI number: 91785512

Start: 4574224

End: 4574976

Strand: Reverse

Name: pobR [H]

Synonym: Bxe_A0267

Alternate gene names: 91785512

Gene position: 4574976-4574224 (Counterclockwise)

Preceding gene: 91785514

Following gene: 91785511

Centisome position: 93.45

GC content: 66.14

Gene sequence:

>753_bases
ATGGACGAGAAAGACTGGATCGCGGGCGCCGCGAAAGCGCTGGCGATCATCGAAGCATTCGACGAAGAGCATGCCCGCAT
GACGCCGACCACGGTGGCCGCTCGCGCAGGTCTGTCGCGCACGGCGGCGCGGCGCTATTTGTTGACGCTGCGCGAACTCG
GCTATGTGGATACCGACGGCAAGCTCTTCTGGCTCGCGCCGCGTGTCTTGCGGCTCGGTCAGTCGTATCTGGATTCGGCG
CGCTTGCCGCGCACCGTGCAGCCGTTCCTGCAACGCATTACCGCAACGGTGCAGGAAACCGCGCTGGTCGCGATCCTCGA
TGAACACGATGTGGTGTACGTGGCGCGCAACGGCGTGAACCGGGCGATGGCGGTCGGCTTCGTGCTCGGCTCGCGCGCGC
CGGCGCCGTTGTCGTCGGCGGGACTGGTCTTGCTGGCGTTCCAGGCGCCGGAGAGCATCGAGCAGTGGCTCGCGTCCTAC
CCGATCAAGGTGTTCACGCCGCACACCTATTCGACGATCCAGCAGTTGCGCGACGTGCTCGGCGAGATCCGCCGCAATGG
CTACGTGGTGACCGATCAGCAACTGGAGTTGGGCGTGCGCGGCGTGGCGGTGCCGTTGCGCGACCGGCACGGTTCGGTCG
TCGCGGCGATTAGCGTCAGCATGCCGATCGGACAGGAGTCGGCAAACGCCGCGCTGCACCGGGTTTTGCCGACCCTTCTG
GAGAACGCCAGCCTGCTGCGCAATCTGGTTTGA

Upstream 100 bases:

>100_bases
CGGCCGCCCGTCGCTCCCGGCACGCGCGATAATCGCGCGACGGCCACCGAGCGCAGTGCCCCACTGGTCCGACGAGCCGG
CTGATTTTCAGGCAAACGCA

Downstream 100 bases:

>100_bases
GGCTGGTTTGAGGCTGGTTTGAGGCGGTCTAGGTGAATGCCCTAGTGCGGGACAACTAGCGGGTGAAAGGCCCTCGAAAG
CAAGCTGTCTCCCGGAAAAT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MDEKDWIAGAAKALAIIEAFDEEHARMTPTTVAARAGLSRTAARRYLLTLRELGYVDTDGKLFWLAPRVLRLGQSYLDSA
RLPRTVQPFLQRITATVQETALVAILDEHDVVYVARNGVNRAMAVGFVLGSRAPAPLSSAGLVLLAFQAPESIEQWLASY
PIKVFTPHTYSTIQQLRDVLGEIRRNGYVVTDQQLELGVRGVAVPLRDRHGSVVAAISVSMPIGQESANAALHRVLPTLL
ENASLLRNLV

Sequences:

>Translated_250_residues
MDEKDWIAGAAKALAIIEAFDEEHARMTPTTVAARAGLSRTAARRYLLTLRELGYVDTDGKLFWLAPRVLRLGQSYLDSA
RLPRTVQPFLQRITATVQETALVAILDEHDVVYVARNGVNRAMAVGFVLGSRAPAPLSSAGLVLLAFQAPESIEQWLASY
PIKVFTPHTYSTIQQLRDVLGEIRRNGYVVTDQQLELGVRGVAVPLRDRHGSVVAAISVSMPIGQESANAALHRVLPTLL
ENASLLRNLV
>Mature_250_residues
MDEKDWIAGAAKALAIIEAFDEEHARMTPTTVAARAGLSRTAARRYLLTLRELGYVDTDGKLFWLAPRVLRLGQSYLDSA
RLPRTVQPFLQRITATVQETALVAILDEHDVVYVARNGVNRAMAVGFVLGSRAPAPLSSAGLVLLAFQAPESIEQWLASY
PIKVFTPHTYSTIQQLRDVLGEIRRNGYVVTDQQLELGVRGVAVPLRDRHGSVVAAISVSMPIGQESANAALHRVLPTLL
ENASLLRNLV

Specific function: Positive regulator of the pobA gene for p- hydroxybenzoate hydroxylase [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1788131, Length=220, Percent_Identity=28.6363636363636, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082359, Length=216, Percent_Identity=28.2407407407407, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1786468, Length=217, Percent_Identity=27.6497695852535, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1786715, Length=213, Percent_Identity=26.7605633802817, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789999, Length=191, Percent_Identity=26.7015706806283, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012794
- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 27360; Mature: 27360

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEKDWIAGAAKALAIIEAFDEEHARMTPTTVAARAGLSRTAARRYLLTLRELGYVDTDG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCC
KLFWLAPRVLRLGQSYLDSARLPRTVQPFLQRITATVQETALVAILDEHDVVYVARNGVN
CEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEECCCCC
RAMAVGFVLGSRAPAPLSSAGLVLLAFQAPESIEQWLASYPIKVFTPHTYSTIQQLRDVL
HHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCEEEECCCHHHHHHHHHHHH
GEIRRNGYVVTDQQLELGVRGVAVPLRDRHGSVVAAISVSMPIGQESANAALHRVLPTLL
HHHHHCCEEEECHHHHCCCCEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHH
ENASLLRNLV
HHHHHHHHCC
>Mature Secondary Structure
MDEKDWIAGAAKALAIIEAFDEEHARMTPTTVAARAGLSRTAARRYLLTLRELGYVDTDG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCC
KLFWLAPRVLRLGQSYLDSARLPRTVQPFLQRITATVQETALVAILDEHDVVYVARNGVN
CEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEECCCCC
RAMAVGFVLGSRAPAPLSSAGLVLLAFQAPESIEQWLASYPIKVFTPHTYSTIQQLRDVL
HHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCEEEECCCHHHHHHHHHHHH
GEIRRNGYVVTDQQLELGVRGVAVPLRDRHGSVVAAISVSMPIGQESANAALHRVLPTLL
HHHHHCCEEEECHHHHCCCCEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHH
ENASLLRNLV
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8331077 [H]