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The map label for this gene is exbD1 [H]

Identifier: 91785204

GI number: 91785204

Start: 4252256

End: 4252687

Strand: Reverse

Name: exbD1 [H]

Synonym: Bxe_A0575

Alternate gene names: 91785204

Gene position: 4252687-4252256 (Counterclockwise)

Preceding gene: 91785205

Following gene: 91785203

Centisome position: 86.86

GC content: 64.35

Gene sequence:

>432_bases
ATGGCATTCGGCGGACTCGAGAAAAAGCAGACGGCCGCGCCGATGGCCGAGATCAACATGACGCCGCTGATCGACGTGAT
GCTGGTGCTGCTGGTGATTTTTATCATTACCGCGCCTTTATTCACGCACGCAATCCGGCTCGATCTGCCGAAAGTCGCCG
CCGCGCCCGCGCGCCAGACGCCGCAAACCATTTCCCTTTCCATCGACGCCGCCGGCAAACTCTACTGGAACGGCACCGTC
ATCACGCTCGACCAGATGCGCACGCGCTTCACGCAAGCGGGCAAGCAGAGCGACCAACCCGAGATCCATCTGAGCGCCGA
GCGCTCCACGCGCTACGAAGTGATCGCGCAGGTCATGGGCGCGGCGCAGCAGGCGGGTCTGGAGCGGATCGGTTTCGTGA
CCGACCCGCCGCCGCCGGCTGCGAAGCCGTAG

Upstream 100 bases:

>100_bases
GCACGCCTACGTGTGCGCGCCGGCGGAACAGACTCCGGCGCCCGCGCGCGCCCAGCAGGTCTCGACCCACTAAGCGCGCG
CTCAGGCAGAAGGAGGCGAC

Downstream 100 bases:

>100_bases
CCGCGCCGCGTCGCACGCCGCGCCGCGCGGCGTAGCCGTCCGCGGACGGTATAATCAGCCCTTTCCCCCGCAGAAGGGGA
ATCGACGCCATTTCATCCAG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MAFGGLEKKQTAAPMAEINMTPLIDVMLVLLVIFIITAPLFTHAIRLDLPKVAAAPARQTPQTISLSIDAAGKLYWNGTV
ITLDQMRTRFTQAGKQSDQPEIHLSAERSTRYEVIAQVMGAAQQAGLERIGFVTDPPPPAAKP

Sequences:

>Translated_143_residues
MAFGGLEKKQTAAPMAEINMTPLIDVMLVLLVIFIITAPLFTHAIRLDLPKVAAAPARQTPQTISLSIDAAGKLYWNGTV
ITLDQMRTRFTQAGKQSDQPEIHLSAERSTRYEVIAQVMGAAQQAGLERIGFVTDPPPPAAKP
>Mature_142_residues
AFGGLEKKQTAAPMAEINMTPLIDVMLVLLVIFIITAPLFTHAIRLDLPKVAAAPARQTPQTISLSIDAAGKLYWNGTVI
TLDQMRTRFTQAGKQSDQPEIHLSAERSTRYEVIAQVMGAAQQAGLERIGFVTDPPPPAAKP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=133, Percent_Identity=32.3308270676692, Blast_Score=78, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15479; Mature: 15348

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGGLEKKQTAAPMAEINMTPLIDVMLVLLVIFIITAPLFTHAIRLDLPKVAAAPARQT
CCCCCCCCHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
PQTISLSIDAAGKLYWNGTVITLDQMRTRFTQAGKQSDQPEIHLSAERSTRYEVIAQVMG
CCEEEEEECCCCEEEECCEEEEHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHH
AAQQAGLERIGFVTDPPPPAAKP
HHHHCCHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFGGLEKKQTAAPMAEINMTPLIDVMLVLLVIFIITAPLFTHAIRLDLPKVAAAPARQT
CCCCCCCHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
PQTISLSIDAAGKLYWNGTVITLDQMRTRFTQAGKQSDQPEIHLSAERSTRYEVIAQVMG
CCEEEEEECCCCEEEECCEEEEHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHH
AAQQAGLERIGFVTDPPPPAAKP
HHHHCCHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]