| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is dtd [H]
Identifier: 91785168
GI number: 91785168
Start: 4203976
End: 4204434
Strand: Reverse
Name: dtd [H]
Synonym: Bxe_A0612
Alternate gene names: 91785168
Gene position: 4204434-4203976 (Counterclockwise)
Preceding gene: 91785169
Following gene: 91785167
Centisome position: 85.88
GC content: 67.1
Gene sequence:
>459_bases ATGATCGCGCTGATTCAACGTGTGCGGCGCGCGGAGGTGCGCGTGGCCGACCGCGTAACGGGCGCGATCGAGGCGGGTCT GCTCGCGCTCGTCTGCGCCGAACGCGGCGATACGGAGGCGGCGGCCGACCGGCTGCTCGCCAAAGTGCTCGGCTACCGCG TATTCAGCGATGCGGCCGGCAAAATGAATCTCTCCGTACAAAATCTCGACGGCGCCGGGCGCGCGGGCGGCCTGCTGCTC GTTTCGCAGTTCACGCTGGCCGCGGACACCAACAGCGGTCTGCGTCCGAGCTTTACGCCAGCCGCGCCGCCCGATGAAGG CAAGCGCCTCTTCGATTATTTTGTCGCAGCGGCGCGGGCGAAACATCCGGTCGTCGAGACCGGCGAATTCGGCGCCGATA TGCAGGTGTCGCTCGTCAATGACGGGCCGGTCACGTTCTGGCTGCAGACGCACGCCTGA
Upstream 100 bases:
>100_bases GTCGAAGCCGGCGAGTACGTCGTGCAGGTCGGCAAGCGCCGTTTTGCACGCGTCACGCTGACGGCCTGATGGGCCCGACG TCGCATCTGGAGTCGAACCG
Downstream 100 bases:
>100_bases TCCCGGCGGTCGTTCCGGCATGCGCGCCGCGGCGCGCATCTACCCTCCAGCCGCTTTTTGCGACAATAGCGGCTCGGCAT AACCGGCTGATGGCGCCCAC
Product: D-tyrosyl-tRNA(Tyr) deacylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 152; Mature: 152
Protein sequence:
>152_residues MIALIQRVRRAEVRVADRVTGAIEAGLLALVCAERGDTEAAADRLLAKVLGYRVFSDAAGKMNLSVQNLDGAGRAGGLLL VSQFTLAADTNSGLRPSFTPAAPPDEGKRLFDYFVAAARAKHPVVETGEFGADMQVSLVNDGPVTFWLQTHA
Sequences:
>Translated_152_residues MIALIQRVRRAEVRVADRVTGAIEAGLLALVCAERGDTEAAADRLLAKVLGYRVFSDAAGKMNLSVQNLDGAGRAGGLLL VSQFTLAADTNSGLRPSFTPAAPPDEGKRLFDYFVAAARAKHPVVETGEFGADMQVSLVNDGPVTFWLQTHA >Mature_152_residues MIALIQRVRRAEVRVADRVTGAIEAGLLALVCAERGDTEAAADRLLAKVLGYRVFSDAAGKMNLSVQNLDGAGRAGGLLL VSQFTLAADTNSGLRPSFTPAAPPDEGKRLFDYFVAAARAKHPVVETGEFGADMQVSLVNDGPVTFWLQTHA
Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine [H]
COG id: COG1490
COG function: function code J; D-Tyr-tRNAtyr deacylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTD family [H]
Homologues:
Organism=Homo sapiens, GI30795227, Length=154, Percent_Identity=35.0649350649351, Blast_Score=84, Evalue=7e-17, Organism=Escherichia coli, GI1790320, Length=149, Percent_Identity=61.744966442953, Blast_Score=176, Evalue=5e-46, Organism=Caenorhabditis elegans, GI115533292, Length=148, Percent_Identity=37.8378378378378, Blast_Score=81, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6319982, Length=152, Percent_Identity=38.1578947368421, Blast_Score=92, Evalue=4e-20, Organism=Drosophila melanogaster, GI281361569, Length=152, Percent_Identity=35.5263157894737, Blast_Score=82, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003732 [H]
Pfam domain/function: PF02580 Tyr_Deacylase [H]
EC number: NA
Molecular weight: Translated: 16111; Mature: 16111
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIALIQRVRRAEVRVADRVTGAIEAGLLALVCAERGDTEAAADRLLAKVLGYRVFSDAAG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC KMNLSVQNLDGAGRAGGLLLVSQFTLAADTNSGLRPSFTPAAPPDEGKRLFDYFVAAARA EEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC KHPVVETGEFGADMQVSLVNDGPVTFWLQTHA CCCCEECCCCCCCEEEEEECCCCEEEEEEECC >Mature Secondary Structure MIALIQRVRRAEVRVADRVTGAIEAGLLALVCAERGDTEAAADRLLAKVLGYRVFSDAAG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC KMNLSVQNLDGAGRAGGLLLVSQFTLAADTNSGLRPSFTPAAPPDEGKRLFDYFVAAARA EEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC KHPVVETGEFGADMQVSLVNDGPVTFWLQTHA CCCCEECCCCCCCEEEEEECCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA