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The map label for this gene is sucD [H]

Identifier: 91785105

GI number: 91785105

Start: 4137829

End: 4138710

Strand: Reverse

Name: sucD [H]

Synonym: Bxe_A0675

Alternate gene names: 91785105

Gene position: 4138710-4137829 (Counterclockwise)

Preceding gene: 91785106

Following gene: 91785104

Centisome position: 84.54

GC content: 61.56

Gene sequence:

>882_bases
ATGTCGATTCTGATTAATAAAGACACCAAGGTCATCACGCAGGGCATCACCGGCAAGACCGGTCAGTTCCACACGCGTGC
TTGCCGTGAATATGCAAACGGCCGCGAAGCGTACGTTGCGGGTGTGAACCCGAAGCGTGCCGGCGAAGACTTCGAAGGCA
TTCCCATCTACGCCAGCGTCGCTGAAGCCAAGGCTGAAACGGGCGCGACCGTGTCGGTGATCTACGTGCCGCCGGCAGGC
GCTGCTGCTGCGATCTGGGAAGCGGTCGAAGCCGATCTGGATCTGGCGATCTGTATCACGGAAGGCATTCCTGTCCGTGA
CATGATCGAGCTGAAGGCTCGTATGCGCGCCGAAAACCGCAAAACGCTGCTGCTCGGCCCGAACTGCCCGGGCACGATCA
CGCCGGACGAGCTGAAGATCGGCATCATGCCGGGTCATATCCACCGCAAGGGCCGCATCGGCGTCGTGTCGCGTTCGGGC
ACGCTGACGTACGAAGCAGTCGGCCAATTGACGGCGATCGGCCTCGGCCAGTCGTCGGCGGTCGGTATCGGCGGCGACCC
GATCAACGGTCTGAAGCACATCGACGTGATGAAGATGTTCAACGATGATCCGGAAACGGACGCCGTCATCATGATCGGCG
AGATCGGCGGTCCGGACGAAGCGAATGCCGCGTACTGGATCAAGGACAACATGAAGAAGCCGGTGGTTGGCTTCATCGCC
GGTGTCACGGCGCCTCCGGGCAAGCGCATGGGCCACGCCGGCGCGCTGATCTCGGGCGGTGCGGATACGGCCGAAGCGAA
GCTGGAAATCATGGACGCCTGCGGTATCACGGTCACGAAGAACCCGTCGGAAATGGCGCGTCTTCTGAAGGCGATGCTGT
AA

Upstream 100 bases:

>100_bases
TTACGAATGGCGGCGCGGGAATGGCGCATGAGCGGCGCGGGCGAAGAACATCCCGCCGCGCGGCGCAATAGCGCGACGCC
AAACGAACAGAGGTCAATAC

Downstream 100 bases:

>100_bases
ATCGAAATTCACGCGCAGTCACGGCGTTTTTTTTGATACGCTTACGAGACCCTTTCGTGAGCGTGCGGTTCAAAAAGCGG
GGGAGTGCAGACTCCTCCGC

Product: succinyl-CoA synthetase subunit alpha

Products: NA

Alternate protein names: Succinyl-CoA synthetase subunit alpha; SCS-alpha; Vegetative protein 239; VEG239 [H]

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSILINKDTKVITQGITGKTGQFHTRACREYANGREAYVAGVNPKRAGEDFEGIPIYASVAEAKAETGATVSVIYVPPAG
AAAAIWEAVEADLDLAICITEGIPVRDMIELKARMRAENRKTLLLGPNCPGTITPDELKIGIMPGHIHRKGRIGVVSRSG
TLTYEAVGQLTAIGLGQSSAVGIGGDPINGLKHIDVMKMFNDDPETDAVIMIGEIGGPDEANAAYWIKDNMKKPVVGFIA
GVTAPPGKRMGHAGALISGGADTAEAKLEIMDACGITVTKNPSEMARLLKAML

Sequences:

>Translated_293_residues
MSILINKDTKVITQGITGKTGQFHTRACREYANGREAYVAGVNPKRAGEDFEGIPIYASVAEAKAETGATVSVIYVPPAG
AAAAIWEAVEADLDLAICITEGIPVRDMIELKARMRAENRKTLLLGPNCPGTITPDELKIGIMPGHIHRKGRIGVVSRSG
TLTYEAVGQLTAIGLGQSSAVGIGGDPINGLKHIDVMKMFNDDPETDAVIMIGEIGGPDEANAAYWIKDNMKKPVVGFIA
GVTAPPGKRMGHAGALISGGADTAEAKLEIMDACGITVTKNPSEMARLLKAML
>Mature_292_residues
SILINKDTKVITQGITGKTGQFHTRACREYANGREAYVAGVNPKRAGEDFEGIPIYASVAEAKAETGATVSVIYVPPAGA
AAAIWEAVEADLDLAICITEGIPVRDMIELKARMRAENRKTLLLGPNCPGTITPDELKIGIMPGHIHRKGRIGVVSRSGT
LTYEAVGQLTAIGLGQSSAVGIGGDPINGLKHIDVMKMFNDDPETDAVIMIGEIGGPDEANAAYWIKDNMKKPVVGFIAG
VTAPPGKRMGHAGALISGGADTAEAKLEIMDACGITVTKNPSEMARLLKAML

Specific function: Unknown

COG id: COG0074

COG function: function code C; Succinyl-CoA synthetase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the succinate/malate CoA ligase alpha subunit family [H]

Homologues:

Organism=Homo sapiens, GI109452591, Length=287, Percent_Identity=54.006968641115, Blast_Score=261, Evalue=6e-70,
Organism=Homo sapiens, GI38569423, Length=253, Percent_Identity=26.4822134387352, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI38569421, Length=253, Percent_Identity=26.4822134387352, Blast_Score=82, Evalue=5e-16,
Organism=Escherichia coli, GI1786949, Length=293, Percent_Identity=52.5597269624573, Blast_Score=304, Evalue=5e-84,
Organism=Escherichia coli, GI1786513, Length=185, Percent_Identity=28.6486486486486, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17550194, Length=288, Percent_Identity=54.5138888888889, Blast_Score=299, Evalue=1e-81,
Organism=Caenorhabditis elegans, GI17553126, Length=297, Percent_Identity=53.5353535353535, Blast_Score=291, Evalue=2e-79,
Organism=Caenorhabditis elegans, GI17557344, Length=242, Percent_Identity=27.6859504132231, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17551266, Length=254, Percent_Identity=26.3779527559055, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6324716, Length=296, Percent_Identity=47.972972972973, Blast_Score=259, Evalue=4e-70,
Organism=Drosophila melanogaster, GI21356559, Length=297, Percent_Identity=49.1582491582492, Blast_Score=283, Evalue=1e-76,
Organism=Drosophila melanogaster, GI28574296, Length=296, Percent_Identity=53.0405405405405, Blast_Score=273, Evalue=1e-73,
Organism=Drosophila melanogaster, GI281363477, Length=228, Percent_Identity=27.6315789473684, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI281363475, Length=228, Percent_Identity=27.6315789473684, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI281363473, Length=228, Percent_Identity=27.6315789473684, Blast_Score=78, Evalue=7e-15,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017440
- InterPro:   IPR003781
- InterPro:   IPR005810
- InterPro:   IPR005811
- InterPro:   IPR016040
- InterPro:   IPR016102 [H]

Pfam domain/function: PF02629 CoA_binding; PF00549 Ligase_CoA [H]

EC number: =6.2.1.5 [H]

Molecular weight: Translated: 30776; Mature: 30645

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS01216 SUCCINYL_COA_LIG_1 ; PS00399 SUCCINYL_COA_LIG_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILINKDTKVITQGITGKTGQFHTRACREYANGREAYVAGVNPKRAGEDFEGIPIYASV
CEEEEECCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCEEEEEH
AEAKAETGATVSVIYVPPAGAAAAIWEAVEADLDLAICITEGIPVRDMIELKARMRAENR
HHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCC
KTLLLGPNCPGTITPDELKIGIMPGHIHRKGRIGVVSRSGTLTYEAVGQLTAIGLGQSSA
CEEEECCCCCCCCCCCCEEEEEECCCEECCCCEEEEECCCCEEHHHHCCEEEEECCCCCE
VGIGGDPINGLKHIDVMKMFNDDPETDAVIMIGEIGGPDEANAAYWIKDNMKKPVVGFIA
EECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCEEHEE
GVTAPPGKRMGHAGALISGGADTAEAKLEIMDACGITVTKNPSEMARLLKAML
CCCCCCCCCCCCCCEEEECCCCCCHHEEEEEECCCEEEECCHHHHHHHHHHHC
>Mature Secondary Structure 
SILINKDTKVITQGITGKTGQFHTRACREYANGREAYVAGVNPKRAGEDFEGIPIYASV
EEEEECCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCEEEEEH
AEAKAETGATVSVIYVPPAGAAAAIWEAVEADLDLAICITEGIPVRDMIELKARMRAENR
HHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCC
KTLLLGPNCPGTITPDELKIGIMPGHIHRKGRIGVVSRSGTLTYEAVGQLTAIGLGQSSA
CEEEECCCCCCCCCCCCEEEEEECCCEECCCCEEEEECCCCEEHHHHCCEEEEECCCCCE
VGIGGDPINGLKHIDVMKMFNDDPETDAVIMIGEIGGPDEANAAYWIKDNMKKPVVGFIA
EECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCEEHEE
GVTAPPGKRMGHAGALISGGADTAEAKLEIMDACGITVTKNPSEMARLLKAML
CCCCCCCCCCCCCCEEEECCCCCCHHEEEEEECCCEEEECCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]