| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is ispH [H]
Identifier: 91784960
GI number: 91784960
Start: 3971420
End: 3972379
Strand: Reverse
Name: ispH [H]
Synonym: Bxe_A0820
Alternate gene names: 91784960
Gene position: 3972379-3971420 (Counterclockwise)
Preceding gene: 91784961
Following gene: 91784959
Centisome position: 81.14
GC content: 63.33
Gene sequence:
>960_bases ATGAGCATGACGGATACGACTCTTGCTGAAACCGAGATCCTGCTAGCGCAGCCGCGCGGGTTCTGTGCCGGTGTCGACCG GGCGATCGAGATCGTAGAGCGGGCCATCAAGCTGCACGGCTCGCCGATCTACGTGCGTCACGAAATCGTCCATAACGCGT ACGTGGTCGAGGATCTGCGCAAGAAGGGTGCGATCTTCATCGAGCGGCTCGAAGAAGTGCCGCCCGGCAACACGGTTATT TTCAGCGCGCACGGCGTGTCGAAGGCAGTGCGTTCCGAGGCCGAGATTCGCGGGCTGCGGGTGTACGACGCCACGTGCCC GCTCGTGACCAAGGTGCATATCGAGGTCGCGAAGATGCGCCAGGACGGCTTCGACATCGTCATGATCGGCCACAAGGGCC ATCCCGAAGTCGAAGGCACGATGGGCCAGGCGGGCGAGGGCATGCATCTGGTGGAAGACATCGAAGACGTACAGGCCTTG CAACTGGCCGATCCCGAGCGGATTGCATTCGTCACGCAAACCACCCTGTCGGTCGACGACGCAGCCCAGATCATTGCCGC TCTGAAGGCCAAATATCCGTCCATCCGCGAGCCGAAAAAGCAGGATATCTGCTACGCCACGCAAAACCGCCAGGACGCGG TGAAGTTCATGGCGCCGCAATGCGACGTCGTGATCGTGGTCGGCAGCCCGAACAGCTCGAACTCCAACCGGCTGCGCGAG CTGGCCGAGAAGCTCGGCGTGCCTGCCTATATGGTGGACTCGCCCGATCAGATCGATCCGGTCTGGGTCGAAGGCAAACG CCGCATCGGCGTAACGGCCGGCGCCTCGGCGCCGGAAGTGCTGGCGCAGGCGGTGATCGCCCGCCTGCGTGAGCTCGGCG TGCGCAATGTGCGCGCGCTCGACGGCATCGAGGAAAACATTGCGTTTCCGCTACCGCGCGGTTTGGGTCTGCCCGCCTGA
Upstream 100 bases:
>100_bases TGAAAGAAGTCGGTGAAACGTCGGCCCTGTTCGACTTCAACCACCCGCTTGCCGGCCAGGCGCTGGCGTTTGAAGTGAAA ATCATTGGGATTCTGTAAAC
Downstream 100 bases:
>100_bases CAATTTGCTGACTGCTGAAAGAAAAGCGCGCCCGAGGGCGCGCTTTTTTCATATCTGGCGTCCAGCAACTGCGGCTAAAA TAAAGTGCCAGATCATCATG
Product: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MSMTDTTLAETEILLAQPRGFCAGVDRAIEIVERAIKLHGSPIYVRHEIVHNAYVVEDLRKKGAIFIERLEEVPPGNTVI FSAHGVSKAVRSEAEIRGLRVYDATCPLVTKVHIEVAKMRQDGFDIVMIGHKGHPEVEGTMGQAGEGMHLVEDIEDVQAL QLADPERIAFVTQTTLSVDDAAQIIAALKAKYPSIREPKKQDICYATQNRQDAVKFMAPQCDVVIVVGSPNSSNSNRLRE LAEKLGVPAYMVDSPDQIDPVWVEGKRRIGVTAGASAPEVLAQAVIARLRELGVRNVRALDGIEENIAFPLPRGLGLPA
Sequences:
>Translated_319_residues MSMTDTTLAETEILLAQPRGFCAGVDRAIEIVERAIKLHGSPIYVRHEIVHNAYVVEDLRKKGAIFIERLEEVPPGNTVI FSAHGVSKAVRSEAEIRGLRVYDATCPLVTKVHIEVAKMRQDGFDIVMIGHKGHPEVEGTMGQAGEGMHLVEDIEDVQAL QLADPERIAFVTQTTLSVDDAAQIIAALKAKYPSIREPKKQDICYATQNRQDAVKFMAPQCDVVIVVGSPNSSNSNRLRE LAEKLGVPAYMVDSPDQIDPVWVEGKRRIGVTAGASAPEVLAQAVIARLRELGVRNVRALDGIEENIAFPLPRGLGLPA >Mature_318_residues SMTDTTLAETEILLAQPRGFCAGVDRAIEIVERAIKLHGSPIYVRHEIVHNAYVVEDLRKKGAIFIERLEEVPPGNTVIF SAHGVSKAVRSEAEIRGLRVYDATCPLVTKVHIEVAKMRQDGFDIVMIGHKGHPEVEGTMGQAGEGMHLVEDIEDVQALQ LADPERIAFVTQTTLSVDDAAQIIAALKAKYPSIREPKKQDICYATQNRQDAVKFMAPQCDVVIVVGSPNSSNSNRLREL AEKLGVPAYMVDSPDQIDPVWVEGKRRIGVTAGASAPEVLAQAVIARLRELGVRNVRALDGIEENIAFPLPRGLGLPA
Specific function: Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) [H]
COG id: COG0761
COG function: function code IM; Penicillin tolerance protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ispH family [H]
Homologues:
Organism=Escherichia coli, GI1786212, Length=307, Percent_Identity=58.3061889250814, Blast_Score=368, Evalue=1e-103,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003451 [H]
Pfam domain/function: PF02401 LYTB [H]
EC number: =1.17.1.2 [H]
Molecular weight: Translated: 34808; Mature: 34676
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMTDTTLAETEILLAQPRGFCAGVDRAIEIVERAIKLHGSPIYVRHEIVHNAYVVEDLR CCCCCCHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHH KKGAIFIERLEEVPPGNTVIFSAHGVSKAVRSEAEIRGLRVYDATCPLVTKVHIEVAKMR HCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCEEEEECCCCEEHHHHHHHHHHH QDGFDIVMIGHKGHPEVEGTMGQAGEGMHLVEDIEDVQALQLADPERIAFVTQTTLSVDD CCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHH AAQIIAALKAKYPSIREPKKQDICYATQNRQDAVKFMAPQCDVVIVVGSPNSSNSNRLRE HHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH LAEKLGVPAYMVDSPDQIDPVWVEGKRRIGVTAGASAPEVLAQAVIARLRELGVRNVRAL HHHHHCCCEEEECCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHH DGIEENIAFPLPRGLGLPA CCCHHCCCCCCCCCCCCCC >Mature Secondary Structure SMTDTTLAETEILLAQPRGFCAGVDRAIEIVERAIKLHGSPIYVRHEIVHNAYVVEDLR CCCCCHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHH KKGAIFIERLEEVPPGNTVIFSAHGVSKAVRSEAEIRGLRVYDATCPLVTKVHIEVAKMR HCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCEEEEECCCCEEHHHHHHHHHHH QDGFDIVMIGHKGHPEVEGTMGQAGEGMHLVEDIEDVQALQLADPERIAFVTQTTLSVDD CCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHH AAQIIAALKAKYPSIREPKKQDICYATQNRQDAVKFMAPQCDVVIVVGSPNSSNSNRLRE HHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH LAEKLGVPAYMVDSPDQIDPVWVEGKRRIGVTAGASAPEVLAQAVIARLRELGVRNVRAL HHHHHCCCEEEECCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHH DGIEENIAFPLPRGLGLPA CCCHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA