| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91784935
Identifier: 91784935
GI number: 91784935
Start: 3945034
End: 3946668
Strand: Reverse
Name: 91784935
Synonym: Bxe_A0845
Alternate gene names: NA
Gene position: 3946668-3945034 (Counterclockwise)
Preceding gene: 91784936
Following gene: 91784934
Centisome position: 80.61
GC content: 63.06
Gene sequence:
>1635_bases ATGGCGCAGATTTACCCGGCCGGCTGGCGTGATGCGATCGTGAGCGGCGCAGCGAAGCGCGAGATCGAAACGCTCGGCGT TCTTCATCGCGACCTGCCCGACACTTACGCCGTCTATCATGGCGTGCACTGGACGCAGCTGAACAAAGGCTTTTCCATTT TCGGCGAGGCCGACTTCGTCGTGGTCAGCCCGGCTGGGCGTGTGCTCGTGATCGAGCAGAAGTCGGGGGCCCTCGAAGAG ACGCCGGACGGTCTCGTGAAGCTTTATGCCGGCAGGGGCAAGAGCGTGCATTCGCAGATTGCGCGCACCATCGGTGGTAT GCACAAGCGCTTTTCCAGCGCGTTCGGCGCACGGAACTATAAGCTCGAAGAAATGCTGTACTGCCCGGACTATCGGGTGA ACGATCCGGCAATCTCCGGTGTCAATCCCGAGCGGATCGTCGACGCGACGCGCAGCGATCAACTCGCGCAGATCGTCGAA CGCATTCTGCCTGCCGACGAGCCGGCGCAGCCTTGCCTGCCACGCCTGCATGCGTTTCTTGCCGACGAACTCTCGCTGAC ACCGGATGTCCGCTCGATGATTGGCGAGATCAACAGGCACGTTACGCGCGTGTCTGGCGGCCTGGCCACCTGGGCGCGTT CGATCGAATTCGAGCCTTTCAGGCTGCGCGTGATCGGCACCGCGGGCTCGGGCAAGACGCAACTCGCGGTGCGGGTGCTC GACGACGCTGTCAAGGCAGGCCGGCGCGCGCTCTACCTGTGCTTCAACCGGCCGCTTGCCGATCATCTCCGGCGTATCGC GTCCGAGGGCGCAACCGTTCTCACGTACCACCAGCTTTGCCAACTGGCGGCCGCGCGCCAAGGGCATGCAATCGACTTTG GCGACGCCGGTGTGTTCGGGTTGCTCGAGCGGGCACTCCTCGACATGCATTTCGACGAATCCGAGCGTTTCGATACGGTG ATCGTCGACGAAGGGCAGGACTTCCGCCAGGCGTGGGTGGCGCCGATCGAACGATTGTTGCGCCAGGACGGCCGCTTCTG GTGGCTGGAAGATCCGATGCAGAATCTGTACTTGCGCAAGAGCGTCGAACTGCCGGGTTGGGTCGAAGTGCGTGCAATGG CCAATCACCGTAGCCCGCATGACGTCGTGCAGTTTATCGACATGCTCTCGGACGCGCCCATGAAGATCGAGGTGGCCGGA CCGTTCACCCGATCGGATCTCCGCACGATGACCTACGCGGGCAGCAATGCGACGCAGGCCACCCTGGAAGCGCTCGACGA AGCGATGTCGGCCGGCTTTTCGCCATCGGACATCGCGCTGCTGACGTTCAGCGGCCGTGACAAGTCGCTGTTGCTGGCGC TCGACCGGCTCGGCCGTCATCGGTTGCGCAGTTTCTCCGGCGCGTATGACGGACAAGGGTCGCCACGCTATCGCGACGGC GACATCACGGCAGAAACTGTCTATCGCTTCAAAGGGCAGAGCGCGCCTTGCGTGATCCTGACCGAGGTCGACTTCGAACA GTTCGACGACGCGGTGTTCCGGCGTCTGTTCGTCGGTGCCACGCGTGCGACGATGAAGCTGATCGTCGTGATGTCCGAAC GCGCGGAGGCGCAACTGATTCGGCGATTGTCGTAG
Upstream 100 bases:
>100_bases TCGCTGTCGAAAGAGGTGGTCTCGCGCTGCACTATCCGGTGCTCAGGCCCGACAGCGCGAACATCTACAGTAAATAACGG TCAGCGGGAGACAGCGACAT
Downstream 100 bases:
>100_bases CGCATGCGGTAGGGGCCTGTCCGGTATCGTGCGGCGGCGCGATCATGCGCGGCAGCTCGCGACTCACGTGGCCCTGTATC GCGTCGCGAGTCGGGACACA
Product: hypothetical protein
Products: NA
Alternate protein names: NERD Domain-Containing Protein; Nerd Domain Protein; AAA ATPase; Helicase; Nuclease-Related Domain Family
Number of amino acids: Translated: 544; Mature: 543
Protein sequence:
>544_residues MAQIYPAGWRDAIVSGAAKREIETLGVLHRDLPDTYAVYHGVHWTQLNKGFSIFGEADFVVVSPAGRVLVIEQKSGALEE TPDGLVKLYAGRGKSVHSQIARTIGGMHKRFSSAFGARNYKLEEMLYCPDYRVNDPAISGVNPERIVDATRSDQLAQIVE RILPADEPAQPCLPRLHAFLADELSLTPDVRSMIGEINRHVTRVSGGLATWARSIEFEPFRLRVIGTAGSGKTQLAVRVL DDAVKAGRRALYLCFNRPLADHLRRIASEGATVLTYHQLCQLAAARQGHAIDFGDAGVFGLLERALLDMHFDESERFDTV IVDEGQDFRQAWVAPIERLLRQDGRFWWLEDPMQNLYLRKSVELPGWVEVRAMANHRSPHDVVQFIDMLSDAPMKIEVAG PFTRSDLRTMTYAGSNATQATLEALDEAMSAGFSPSDIALLTFSGRDKSLLLALDRLGRHRLRSFSGAYDGQGSPRYRDG DITAETVYRFKGQSAPCVILTEVDFEQFDDAVFRRLFVGATRATMKLIVVMSERAEAQLIRRLS
Sequences:
>Translated_544_residues MAQIYPAGWRDAIVSGAAKREIETLGVLHRDLPDTYAVYHGVHWTQLNKGFSIFGEADFVVVSPAGRVLVIEQKSGALEE TPDGLVKLYAGRGKSVHSQIARTIGGMHKRFSSAFGARNYKLEEMLYCPDYRVNDPAISGVNPERIVDATRSDQLAQIVE RILPADEPAQPCLPRLHAFLADELSLTPDVRSMIGEINRHVTRVSGGLATWARSIEFEPFRLRVIGTAGSGKTQLAVRVL DDAVKAGRRALYLCFNRPLADHLRRIASEGATVLTYHQLCQLAAARQGHAIDFGDAGVFGLLERALLDMHFDESERFDTV IVDEGQDFRQAWVAPIERLLRQDGRFWWLEDPMQNLYLRKSVELPGWVEVRAMANHRSPHDVVQFIDMLSDAPMKIEVAG PFTRSDLRTMTYAGSNATQATLEALDEAMSAGFSPSDIALLTFSGRDKSLLLALDRLGRHRLRSFSGAYDGQGSPRYRDG DITAETVYRFKGQSAPCVILTEVDFEQFDDAVFRRLFVGATRATMKLIVVMSERAEAQLIRRLS >Mature_543_residues AQIYPAGWRDAIVSGAAKREIETLGVLHRDLPDTYAVYHGVHWTQLNKGFSIFGEADFVVVSPAGRVLVIEQKSGALEET PDGLVKLYAGRGKSVHSQIARTIGGMHKRFSSAFGARNYKLEEMLYCPDYRVNDPAISGVNPERIVDATRSDQLAQIVER ILPADEPAQPCLPRLHAFLADELSLTPDVRSMIGEINRHVTRVSGGLATWARSIEFEPFRLRVIGTAGSGKTQLAVRVLD DAVKAGRRALYLCFNRPLADHLRRIASEGATVLTYHQLCQLAAARQGHAIDFGDAGVFGLLERALLDMHFDESERFDTVI VDEGQDFRQAWVAPIERLLRQDGRFWWLEDPMQNLYLRKSVELPGWVEVRAMANHRSPHDVVQFIDMLSDAPMKIEVAGP FTRSDLRTMTYAGSNATQATLEALDEAMSAGFSPSDIALLTFSGRDKSLLLALDRLGRHRLRSFSGAYDGQGSPRYRDGD ITAETVYRFKGQSAPCVILTEVDFEQFDDAVFRRLFVGATRATMKLIVVMSERAEAQLIRRLS
Specific function: Unknown
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60638; Mature: 60507
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQIYPAGWRDAIVSGAAKREIETLGVLHRDLPDTYAVYHGVHWTQLNKGFSIFGEADFV CCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHCCCEEEECCCCCEEECCCCEE VVSPAGRVLVIEQKSGALEETPDGLVKLYAGRGKSVHSQIARTIGGMHKRFSSAFGARNY EECCCCCEEEEECCCCCCCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC KLEEMLYCPDYRVNDPAISGVNPERIVDATRSDQLAQIVERILPADEPAQPCLPRLHAFL CHHHEEECCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH ADELSLTPDVRSMIGEINRHVTRVSGGLATWARSIEFEPFRLRVIGTAGSGKTQLAVRVL HHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHH DDAVKAGRRALYLCFNRPLADHLRRIASEGATVLTYHQLCQLAAARQGHAIDFGDAGVFG HHHHHCCCEEEEEEECCCHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCEEECCCCCHHH LLERALLDMHFDESERFDTVIVDEGQDFRQAWVAPIERLLRQDGRFWWLEDPMQNLYLRK HHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHH SVELPGWVEVRAMANHRSPHDVVQFIDMLSDAPMKIEVAGPFTRSDLRTMTYAGSNATQA CCCCCCCEEEEEHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHEEEECCCCHHHH TLEALDEAMSAGFSPSDIALLTFSGRDKSLLLALDRLGRHRLRSFSGAYDGQGSPRYRDG HHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC DITAETVYRFKGQSAPCVILTEVDFEQFDDAVFRRLFVGATRATMKLIVVMSERAEAQLI CCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHHEEEEEEECCHHHHHHH RRLS HHCC >Mature Secondary Structure AQIYPAGWRDAIVSGAAKREIETLGVLHRDLPDTYAVYHGVHWTQLNKGFSIFGEADFV CCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHCCCEEEECCCCCEEECCCCEE VVSPAGRVLVIEQKSGALEETPDGLVKLYAGRGKSVHSQIARTIGGMHKRFSSAFGARNY EECCCCCEEEEECCCCCCCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC KLEEMLYCPDYRVNDPAISGVNPERIVDATRSDQLAQIVERILPADEPAQPCLPRLHAFL CHHHEEECCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH ADELSLTPDVRSMIGEINRHVTRVSGGLATWARSIEFEPFRLRVIGTAGSGKTQLAVRVL HHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHH DDAVKAGRRALYLCFNRPLADHLRRIASEGATVLTYHQLCQLAAARQGHAIDFGDAGVFG HHHHHCCCEEEEEEECCCHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCEEECCCCCHHH LLERALLDMHFDESERFDTVIVDEGQDFRQAWVAPIERLLRQDGRFWWLEDPMQNLYLRK HHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHH SVELPGWVEVRAMANHRSPHDVVQFIDMLSDAPMKIEVAGPFTRSDLRTMTYAGSNATQA CCCCCCCEEEEEHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHEEEECCCCHHHH TLEALDEAMSAGFSPSDIALLTFSGRDKSLLLALDRLGRHRLRSFSGAYDGQGSPRYRDG HHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC DITAETVYRFKGQSAPCVILTEVDFEQFDDAVFRRLFVGATRATMKLIVVMSERAEAQLI CCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHHEEEEEEECCHHHHHHH RRLS HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA