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The map label for this gene is ydjQ [C]

Identifier: 91784877

GI number: 91784877

Start: 3879713

End: 3880900

Strand: Reverse

Name: ydjQ [C]

Synonym: Bxe_A0914

Alternate gene names: 91784877

Gene position: 3880900-3879713 (Counterclockwise)

Preceding gene: 91784878

Following gene: 91784875

Centisome position: 79.27

GC content: 65.74

Gene sequence:

>1188_bases
TTGCCGCAAAGCCACGCGTCCAAAGTATTCTTTTCCATGTCTGAACAGTTTTTGTCCGAACCGGCCCTGGATGGTCCGAT
TGTTTTCGTCGACCTTGAAACGACCGGCGGCTCGACTGCCGAGCATCGCATCACCGAGGTCGGGGTGGTCGAAGTCGGAC
CGGCCGGCGTGTCGCGCTGGAGCAGTCTGGTCGACCCTCAGCAGCCCATTCCCTCCTTCATCCAGCAACTCACCGGTATC
ACGAATGCGATGGTGCGGGGCGCGCCGACTTTCGAGGCCATCGCCCCCGCTCTTTTCGAGCGTCTGAACGGCAAACTGTT
CGTGGCGCATAACGCCAGTTTCGATCGCGGCTTTCTGCGCGGCGAGTTTCGCCGGGCGGGACTGGCGTTCGATCCCGACG
TGTTGTGCACGGTGCGTTTGTCGCGCGCGCTGTTCCCGGCGGAAAAACGCCACGGTCTCGACGCTTTGGTCGAACGTCAT
ACGCTCGTGCCGTCCGATCGTCACCGCGCGCTCGCCGACGCCGACCTGATCTGGCAGTTCTGGCAGCGTCTACACGGCCT
CGTGCCGCTCGACGTCCTGCGCGCGCAGATCGAGCGCACCACGCGGCGGTACCGGCTTGCCGGTGACATCACGGAAGATC
TGCTCGACACCGCGCCCGCGGGCTGTGGCGTGTATGCGTTCTATGGAGAGCAGGACTTGCCTCTGTATGTCGGGCGAAGC
GTGCGCGTGCGTCAGCGACTGCGTTCACATCTGACCGGCGAGCGGCGCTCGGCCAAAGATATCCGGCTTGCGCAACAGGT
GCGGCGCGTCGAGTGGCGGGCCACCGGCGGCGAATTGGGCGCGATGCTCGCGGAGGCACAGTGGATCGCGGCGCTGCGCC
CCGGCCACAACCGGGTGCCGCGTGTCGCGAAGAGCGATCCGGCGGACGCGCCCTGGCCGTTCGAGGGGCCGATCGTATTC
GAGGAGCGCGAGGAGGCCTCGCAGGCCCGCGCGTTTCATGTCGTCGACCGCTGGCGCTACGTGGGCCATGCGGCGTCGCT
CGCTGAGGCTGCCGGGTTGCATGCGTCGAGTGTTGCGGGAGCATTCGAACTGTCGACGTATCGCATTTTGCAGAGCCATC
TTGCCCGCGGCCTGCGGGTGATGCCGTTGAACGTGTCGAGCGGAACGCCCGTGGCGAAGGTCGCTTGA

Upstream 100 bases:

>100_bases
TAAGCATGCCGTTTGCCCGCGCGAAAACGGGGCTGTTGCGCCCTGGTGAGGCTGCCGTAATGCAGGCTGTTCGAGTGCAC
CACGGGCAACTGGTGCATAC

Downstream 100 bases:

>100_bases
CGAAGTCCGACTGCTTGGCATTTGGCGGCTTTGTTTTTGGCCTTTCTGCGGCCCGCCTCTGTTTCCAGCCGCTATTCCTG
CCCGATAACTCGCCGCCCAA

Product: DNA polymerase III, epsilon subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MPQSHASKVFFSMSEQFLSEPALDGPIVFVDLETTGGSTAEHRITEVGVVEVGPAGVSRWSSLVDPQQPIPSFIQQLTGI
TNAMVRGAPTFEAIAPALFERLNGKLFVAHNASFDRGFLRGEFRRAGLAFDPDVLCTVRLSRALFPAEKRHGLDALVERH
TLVPSDRHRALADADLIWQFWQRLHGLVPLDVLRAQIERTTRRYRLAGDITEDLLDTAPAGCGVYAFYGEQDLPLYVGRS
VRVRQRLRSHLTGERRSAKDIRLAQQVRRVEWRATGGELGAMLAEAQWIAALRPGHNRVPRVAKSDPADAPWPFEGPIVF
EEREEASQARAFHVVDRWRYVGHAASLAEAAGLHASSVAGAFELSTYRILQSHLARGLRVMPLNVSSGTPVAKVA

Sequences:

>Translated_395_residues
MPQSHASKVFFSMSEQFLSEPALDGPIVFVDLETTGGSTAEHRITEVGVVEVGPAGVSRWSSLVDPQQPIPSFIQQLTGI
TNAMVRGAPTFEAIAPALFERLNGKLFVAHNASFDRGFLRGEFRRAGLAFDPDVLCTVRLSRALFPAEKRHGLDALVERH
TLVPSDRHRALADADLIWQFWQRLHGLVPLDVLRAQIERTTRRYRLAGDITEDLLDTAPAGCGVYAFYGEQDLPLYVGRS
VRVRQRLRSHLTGERRSAKDIRLAQQVRRVEWRATGGELGAMLAEAQWIAALRPGHNRVPRVAKSDPADAPWPFEGPIVF
EEREEASQARAFHVVDRWRYVGHAASLAEAAGLHASSVAGAFELSTYRILQSHLARGLRVMPLNVSSGTPVAKVA
>Mature_394_residues
PQSHASKVFFSMSEQFLSEPALDGPIVFVDLETTGGSTAEHRITEVGVVEVGPAGVSRWSSLVDPQQPIPSFIQQLTGIT
NAMVRGAPTFEAIAPALFERLNGKLFVAHNASFDRGFLRGEFRRAGLAFDPDVLCTVRLSRALFPAEKRHGLDALVERHT
LVPSDRHRALADADLIWQFWQRLHGLVPLDVLRAQIERTTRRYRLAGDITEDLLDTAPAGCGVYAFYGEQDLPLYVGRSV
RVRQRLRSHLTGERRSAKDIRLAQQVRRVEWRATGGELGAMLAEAQWIAALRPGHNRVPRVAKSDPADAPWPFEGPIVFE
EREEASQARAFHVVDRWRYVGHAASLAEAAGLHASSVAGAFELSTYRILQSHLARGLRVMPLNVSSGTPVAKVA

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788037, Length=86, Percent_Identity=41.8604651162791, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337
- InterPro:   IPR000305 [H]

Pfam domain/function: PF00929 Exonuc_X-T; PF01541 GIY-YIG [H]

EC number: NA

Molecular weight: Translated: 43642; Mature: 43511

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS50164 UVRC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQSHASKVFFSMSEQFLSEPALDGPIVFVDLETTGGSTAEHRITEVGVVEVGPAGVSRW
CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHEECEEEECCCCHHHH
SSLVDPQQPIPSFIQQLTGITNAMVRGAPTFEAIAPALFERLNGKLFVAHNASFDRGFLR
HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCHHHH
GEFRRAGLAFDPDVLCTVRLSRALFPAEKRHGLDALVERHTLVPSDRHRALADADLIWQF
HHHHHCCCCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
WQRLHGLVPLDVLRAQIERTTRRYRLAGDITEDLLDTAPAGCGVYAFYGEQDLPLYVGRS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCC
VRVRQRLRSHLTGERRSAKDIRLAQQVRRVEWRATGGELGAMLAEAQWIAALRPGHNRVP
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC
RVAKSDPADAPWPFEGPIVFEEREEASQARAFHVVDRWRYVGHAASLAEAAGLHASSVAG
CCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
AFELSTYRILQSHLARGLRVMPLNVSSGTPVAKVA
HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
PQSHASKVFFSMSEQFLSEPALDGPIVFVDLETTGGSTAEHRITEVGVVEVGPAGVSRW
CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHEECEEEECCCCHHHH
SSLVDPQQPIPSFIQQLTGITNAMVRGAPTFEAIAPALFERLNGKLFVAHNASFDRGFLR
HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCHHHH
GEFRRAGLAFDPDVLCTVRLSRALFPAEKRHGLDALVERHTLVPSDRHRALADADLIWQF
HHHHHCCCCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
WQRLHGLVPLDVLRAQIERTTRRYRLAGDITEDLLDTAPAGCGVYAFYGEQDLPLYVGRS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCC
VRVRQRLRSHLTGERRSAKDIRLAQQVRRVEWRATGGELGAMLAEAQWIAALRPGHNRVP
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC
RVAKSDPADAPWPFEGPIVFEEREEASQARAFHVVDRWRYVGHAASLAEAAGLHASSVAG
CCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
AFELSTYRILQSHLARGLRVMPLNVSSGTPVAKVA
HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]