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The map label for this gene is ihfB [H]

Identifier: 91784810

GI number: 91784810

Start: 3799956

End: 3800279

Strand: Reverse

Name: ihfB [H]

Synonym: Bxe_A0983

Alternate gene names: 91784810

Gene position: 3800279-3799956 (Counterclockwise)

Preceding gene: 161621315

Following gene: 91784809

Centisome position: 77.62

GC content: 58.02

Gene sequence:

>324_bases
ATGACCAAATCGGAATTGGTCGCCCAGCTGGCTACGCGATTTCCGCAACTTGTTCTTAAAGATGCGGATTTCGCGGTGAA
GACGATGCTTGATGCGATGTCGGAGGCGCTTGCCAACGGTCATCGCATTGAAATTCGCGGCTTCGGCAGCTTCGGCCTTA
ACCGCCGTCCCTCCCGCGTCGGGCGTAATCCGAAGTCGGGCGAGAAGGTGTTGGTACCTGAGAAGTACGTACCGCACTTC
AAGCCAGGCAAGGAATTGCGTGAGCGGGTAGATCGTCGCGCGGGCGAGCCGCTGAAGGCCGAAGATCCGGATGACGACCT
GTAA

Upstream 100 bases:

>100_bases
TGAGGAGCGCCCCCAAACCTGTCGCTTCGCGCCAGGCCCCCCAAGGGGGCCAGGAAAACTTGGGGGCGGCCCGGCGTTTT
CTTGAGAGGTCTGCTGCAGT

Downstream 100 bases:

>100_bases
ATGCTTCGCTGTGCCGTTTGCAGTGTGGCATAGGTAGCGTCAGCGGCCAAAGCCAGTCGGCAAAAGACCAGAAAAAGCGC
CTTCGGGCGCTTTTTTTTCG

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRVGRNPKSGEKVLVPEKYVPHF
KPGKELRERVDRRAGEPLKAEDPDDDL

Sequences:

>Translated_107_residues
MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRVGRNPKSGEKVLVPEKYVPHF
KPGKELRERVDRRAGEPLKAEDPDDDL
>Mature_106_residues
TKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRVGRNPKSGEKVLVPEKYVPHFK
PGKELRERVDRRAGEPLKAEDPDDDL

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=59.3406593406593, Blast_Score=109, Evalue=5e-26,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=34.4444444444444, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1788005, Length=91, Percent_Identity=35.1648351648352, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 12014; Mature: 11883

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHC
GRNPKSGEKVLVPEKYVPHFKPGKELRERVDRRAGEPLKAEDPDDDL
CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHC
GRNPKSGEKVLVPEKYVPHFKPGKELRERVDRRAGEPLKAEDPDDDL
CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA