| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is udg [H]
Identifier: 91784807
GI number: 91784807
Start: 3796487
End: 3797890
Strand: Reverse
Name: udg [H]
Synonym: Bxe_A0986
Alternate gene names: 91784807
Gene position: 3797890-3796487 (Counterclockwise)
Preceding gene: 91784808
Following gene: 91784806
Centisome position: 77.57
GC content: 63.32
Gene sequence:
>1404_bases ATGAAAATCACCATTATCGGCACGGGCTACGTGGGTCTCGTCACTGGCGCGTGTCTCGCCGAGATCGGCCACGACGTCTT CTGTCTGGACGTCGATCCGCGCAAGATCGAAATCCTCAATAACGGCGGCGTGCCGATTCACGAGCCGGGCTTGCAGGAGA TGATCGCCCGCACACGCGCGGCGCGCCGCATCACGTTTTCCACCGATGTCGAAGCCGGCGTCGCGCACGGCGACGTGCAG TTCATCGCCGTCGGCACGCCGCCGGACGAAGACGGTTCGGCCGATCTGCAATATGTGCTCGAAGCGGCCCGCAACATCGG CCGCACCATGAACGGCTTCAAGGTGATCGTCGACAAATCGACGGTGCCGGTCGGCACCGCGCAGCGCGTGCGCGCGGTGG TCGAAGAAGAGCTGGCCAAACGCGGACTTGCCGGCAGCGCGCAACACGGCTTCTCGGTGGTGTCCAATCCCGAATTCCTG AAGGAAGGCGCGGCGGTCGACGACTTCATGCGCCCCGACCGCATCGTGATCGGCCTCGACGAAGACGAAGCCGGCTCGCG CGCGCGCGAACTGATGAAGCGTCTGTACGCGCCGTTCAACCGCAATCACGAACGCACGCTGTACATGGACGTGCGCTCGG CCGAATTCACGAAATACGCGGCGAATGCGATGCTCGCCACCCGCATCTCGTTCATGAACGAAATGTCGAATCTGGCGGAC CGCGTCGGCGCGGATATCGAGGCGGTGCGCCGCGGCATCGGTTCCGATCCACGGATCGGCTATCACTTCCTGTATGCCGG TTGCGGCTATGGCGGCTCGTGCTTCCCCAAAGACGTCCAGGCGCTGATCCGCACGGCCAGCGAAAGCGGCCACAATCTGC GCATTCTCGAAGCGGTCGAAGAAGTGAACGACAGGCAGAAAGACGTGCTGGTGCACAAGATCACGAGCAAGCTCGGCAAC GATCTGAGCGGCCGCACGTTCGCGGTGTGGGGTCTCGCGTTCAAGCCCAATACCGACGACATGCGCGAGGCGCCGAGCCG CCGCCTGATCGCGGAACTGCTGGCGCGCGGCGCGCATGTGCGCGCGTACGATCCGGTCGCGGTGACCGAAGCGCGCCGCG TATTCGCCATCGACCTGCATGACGCACCGGAGCAGTTCGCGCGTCTCACCTTCGCGACCACGCAGGACGAAACGCTCACG GGCGCCGACGCCCTCGTGATCGTGACCGAATGGAAAGAATTCAAGAGCCCGGACTTCGTCCATCTGAAATCGGTGCTGAA ATCGCCGCTGATTTTCGACGGACGCAACCTGTATGAACCGGACGCGATGACCGAGCTCGGCATCGACTATCACTCGATTG GACGCCCTTATGCCCAACCCTCTGAACTTCCGGCCGATGTCTGA
Upstream 100 bases:
>100_bases CCGCGCACGGCAACTGCCCCTGCGCGGGCGGAATTTGCAACATGTTCGTGACCGGCTTCATCGCCGGGAATCATCACCGG AACCCTCTACCGGATAGCGT
Downstream 100 bases:
>100_bases GATCGCGCCCGGCGCCGCTCCGTCCACGCCCGCGCCGCAGCTCACCAGCGTGCCGCGCGAACAGCTCGCCGCGGCGCGCG TGCTGGTGGTGGGCGACGTG
Product: UDP-glucose 6-dehydrogenase
Products: NA
Alternate protein names: UDP-Glc dehydrogenase; UDP-GlcDH; UDPGDH [H]
Number of amino acids: Translated: 467; Mature: 467
Protein sequence:
>467_residues MKITIIGTGYVGLVTGACLAEIGHDVFCLDVDPRKIEILNNGGVPIHEPGLQEMIARTRAARRITFSTDVEAGVAHGDVQ FIAVGTPPDEDGSADLQYVLEAARNIGRTMNGFKVIVDKSTVPVGTAQRVRAVVEEELAKRGLAGSAQHGFSVVSNPEFL KEGAAVDDFMRPDRIVIGLDEDEAGSRARELMKRLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNEMSNLAD RVGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVQALIRTASESGHNLRILEAVEEVNDRQKDVLVHKITSKLGN DLSGRTFAVWGLAFKPNTDDMREAPSRRLIAELLARGAHVRAYDPVAVTEARRVFAIDLHDAPEQFARLTFATTQDETLT GADALVIVTEWKEFKSPDFVHLKSVLKSPLIFDGRNLYEPDAMTELGIDYHSIGRPYAQPSELPADV
Sequences:
>Translated_467_residues MKITIIGTGYVGLVTGACLAEIGHDVFCLDVDPRKIEILNNGGVPIHEPGLQEMIARTRAARRITFSTDVEAGVAHGDVQ FIAVGTPPDEDGSADLQYVLEAARNIGRTMNGFKVIVDKSTVPVGTAQRVRAVVEEELAKRGLAGSAQHGFSVVSNPEFL KEGAAVDDFMRPDRIVIGLDEDEAGSRARELMKRLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNEMSNLAD RVGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVQALIRTASESGHNLRILEAVEEVNDRQKDVLVHKITSKLGN DLSGRTFAVWGLAFKPNTDDMREAPSRRLIAELLARGAHVRAYDPVAVTEARRVFAIDLHDAPEQFARLTFATTQDETLT GADALVIVTEWKEFKSPDFVHLKSVLKSPLIFDGRNLYEPDAMTELGIDYHSIGRPYAQPSELPADV >Mature_467_residues MKITIIGTGYVGLVTGACLAEIGHDVFCLDVDPRKIEILNNGGVPIHEPGLQEMIARTRAARRITFSTDVEAGVAHGDVQ FIAVGTPPDEDGSADLQYVLEAARNIGRTMNGFKVIVDKSTVPVGTAQRVRAVVEEELAKRGLAGSAQHGFSVVSNPEFL KEGAAVDDFMRPDRIVIGLDEDEAGSRARELMKRLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNEMSNLAD RVGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVQALIRTASESGHNLRILEAVEEVNDRQKDVLVHKITSKLGN DLSGRTFAVWGLAFKPNTDDMREAPSRRLIAELLARGAHVRAYDPVAVTEARRVFAIDLHDAPEQFARLTFATTQDETLT GADALVIVTEWKEFKSPDFVHLKSVLKSPLIFDGRNLYEPDAMTELGIDYHSIGRPYAQPSELPADV
Specific function: Unknown
COG id: COG1004
COG function: function code M; Predicted UDP-glucose 6-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UDP-glucose/GDP-mannose dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI4507813, Length=489, Percent_Identity=36.40081799591, Blast_Score=273, Evalue=3e-73, Organism=Homo sapiens, GI296040438, Length=391, Percent_Identity=37.0843989769821, Blast_Score=222, Evalue=5e-58, Organism=Homo sapiens, GI296040443, Length=333, Percent_Identity=37.8378378378378, Blast_Score=194, Evalue=2e-49, Organism=Escherichia coli, GI1788340, Length=372, Percent_Identity=29.8387096774194, Blast_Score=166, Evalue=3e-42, Organism=Escherichia coli, GI48994968, Length=439, Percent_Identity=27.1070615034169, Blast_Score=142, Evalue=7e-35, Organism=Caenorhabditis elegans, GI17560350, Length=469, Percent_Identity=34.1151385927505, Blast_Score=246, Evalue=1e-65, Organism=Drosophila melanogaster, GI17136908, Length=486, Percent_Identity=35.3909465020576, Blast_Score=261, Evalue=1e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR021157 - InterPro: IPR016040 - InterPro: IPR017476 - InterPro: IPR014027 - InterPro: IPR014026 - InterPro: IPR014028 - InterPro: IPR001732 [H]
Pfam domain/function: PF00984 UDPG_MGDP_dh; PF03720 UDPG_MGDP_dh_C; PF03721 UDPG_MGDP_dh_N [H]
EC number: =1.1.1.22 [H]
Molecular weight: Translated: 51303; Mature: 51303
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKITIIGTGYVGLVTGACLAEIGHDVFCLDVDPRKIEILNNGGVPIHEPGLQEMIARTRA CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHH ARRITFSTDVEAGVAHGDVQFIAVGTPPDEDGSADLQYVLEAARNIGRTMNGFKVIVDKS HHEEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECC TVPVGTAQRVRAVVEEELAKRGLAGSAQHGFSVVSNPEFLKEGAAVDDFMRPDRIVIGLD CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHCCCCHHHHCCCCEEEEECC EDEAGSRARELMKRLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNEMSNLAD CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH RVGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVQALIRTASESGHNLRILEAVE HHCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH EVNDRQKDVLVHKITSKLGNDLSGRTFAVWGLAFKPNTDDMREAPSRRLIAELLARGAHV HHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHCHHHHHHHHHHHCCCCE RAYDPVAVTEARRVFAIDLHDAPEQFARLTFATTQDETLTGADALVIVTEWKEFKSPDFV EECCCHHHHCCCEEEEEECCCCHHHHHHEEEECCCCCCCCCCCEEEEEEEHHHCCCCCHH HLKSVLKSPLIFDGRNLYEPDAMTELGIDYHSIGRPYAQPSELPADV HHHHHHCCCCEECCCCCCCCCHHHHHCCCHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MKITIIGTGYVGLVTGACLAEIGHDVFCLDVDPRKIEILNNGGVPIHEPGLQEMIARTRA CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHH ARRITFSTDVEAGVAHGDVQFIAVGTPPDEDGSADLQYVLEAARNIGRTMNGFKVIVDKS HHEEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECC TVPVGTAQRVRAVVEEELAKRGLAGSAQHGFSVVSNPEFLKEGAAVDDFMRPDRIVIGLD CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHCCCCHHHHCCCCEEEEECC EDEAGSRARELMKRLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNEMSNLAD CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH RVGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVQALIRTASESGHNLRILEAVE HHCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH EVNDRQKDVLVHKITSKLGNDLSGRTFAVWGLAFKPNTDDMREAPSRRLIAELLARGAHV HHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHCHHHHHHHHHHHCCCCE RAYDPVAVTEARRVFAIDLHDAPEQFARLTFATTQDETLTGADALVIVTEWKEFKSPDFV EECCCHHHHCCCEEEEEECCCCHHHHHHEEEECCCCCCCCCCCEEEEEEEHHHCCCCCHH HLKSVLKSPLIFDGRNLYEPDAMTELGIDYHSIGRPYAQPSELPADV HHHHHHCCCCEECCCCCCCCCHHHHHCCCHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]