| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is yceD [C]
Identifier: 91784723
GI number: 91784723
Start: 3710029
End: 3710682
Strand: Reverse
Name: yceD [C]
Synonym: Bxe_A1069
Alternate gene names: 91784723
Gene position: 3710682-3710029 (Counterclockwise)
Preceding gene: 91784726
Following gene: 91784722
Centisome position: 75.79
GC content: 61.16
Gene sequence:
>654_bases ATGACTCAACATCCTGGCAACCCTGCAGGTCTGCCCGACCCGCATAACCTCGATCTGTTCGAATTTGCGCGGAGTGGGCG TCAGGCCGCGGGTGTCGTGCGCGTCTCGCAACTGCCGCGCATGTTAAACGAAGTCCCGGCAGAAGCGCCAGACCGCGATA CCGCGTTCACCTGGCAAGCCGAAGGGACGACGCAGCCGGAATTGCAGGACGACGGCACCGAGGGTCCCCAGCCTTATTTG AGGTTGGCGATTCACGGCGCCGCATGGCTCGAATGTCAGCGGTGCATGACGCCGTACCTGCAGGCATTCAACGTCGACGC AACTTATCGGGTCGTCAACACTGAGGCGGAAGCCGAAGAGTTTCCGCTCGACGAGGATGAAGTCGAAGTGATCGTGGGCT CGAACCATTTCGATCTCATCGACTTGATCGAAGAAGAGTTGCTGCTTTCCTTGCCGCTCGTGCCCAAGCACGAAGTCTGC CCCGAAGTGCACGAGAGCCTCGTTTCTGGTGTGGCCGGTGCTGAAGGCGAGGAAGATGAGAGCGACGAAAGCGCACCGGA CGAAGCGGGCAAGGGTGACGAGCCCGAGCGGCCCAGTCCGTTTGCGGCGCTCCAGAGTCTCAAGCGCGGTGAGCCGGACG ACAAGAAGCACTGA
Upstream 100 bases:
>100_bases CCAGGCGTGTAACGCTGCGGTGCGCAACGCATGGGGCTCGCAGGTCGTCTCGCAAACCAGTTATATCCTCGGCGAAACCC TTGCCGACGCAGGAGCGCAC
Downstream 100 bases:
>100_bases ACAGTTGCATTGGAGCGCGATGCGGGCGCATTGGCCATTCGGCCAGTGGCGGACACCGGGTCGGGCTGTGTTAGAATCCG AAAAATTTTTAGGAGTTAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 217; Mature: 216
Protein sequence:
>217_residues MTQHPGNPAGLPDPHNLDLFEFARSGRQAAGVVRVSQLPRMLNEVPAEAPDRDTAFTWQAEGTTQPELQDDGTEGPQPYL RLAIHGAAWLECQRCMTPYLQAFNVDATYRVVNTEAEAEEFPLDEDEVEVIVGSNHFDLIDLIEEELLLSLPLVPKHEVC PEVHESLVSGVAGAEGEEDESDESAPDEAGKGDEPERPSPFAALQSLKRGEPDDKKH
Sequences:
>Translated_217_residues MTQHPGNPAGLPDPHNLDLFEFARSGRQAAGVVRVSQLPRMLNEVPAEAPDRDTAFTWQAEGTTQPELQDDGTEGPQPYL RLAIHGAAWLECQRCMTPYLQAFNVDATYRVVNTEAEAEEFPLDEDEVEVIVGSNHFDLIDLIEEELLLSLPLVPKHEVC PEVHESLVSGVAGAEGEEDESDESAPDEAGKGDEPERPSPFAALQSLKRGEPDDKKH >Mature_216_residues TQHPGNPAGLPDPHNLDLFEFARSGRQAAGVVRVSQLPRMLNEVPAEAPDRDTAFTWQAEGTTQPELQDDGTEGPQPYLR LAIHGAAWLECQRCMTPYLQAFNVDATYRVVNTEAEAEEFPLDEDEVEVIVGSNHFDLIDLIEEELLLSLPLVPKHEVCP EVHESLVSGVAGAEGEEDESDESAPDEAGKGDEPERPSPFAALQSLKRGEPDDKKH
Specific function: Unknown
COG id: COG1399
COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23830; Mature: 23699
Theoretical pI: Translated: 4.00; Mature: 4.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQHPGNPAGLPDPHNLDLFEFARSGRQAAGVVRVSQLPRMLNEVPAEAPDRDTAFTWQA CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC EGTTQPELQDDGTEGPQPYLRLAIHGAAWLECQRCMTPYLQAFNVDATYRVVNTEAEAEE CCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH FPLDEDEVEVIVGSNHFDLIDLIEEELLLSLPLVPKHEVCPEVHESLVSGVAGAEGEEDE CCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHCCCCCCCCC SDESAPDEAGKGDEPERPSPFAALQSLKRGEPDDKKH CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TQHPGNPAGLPDPHNLDLFEFARSGRQAAGVVRVSQLPRMLNEVPAEAPDRDTAFTWQA CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC EGTTQPELQDDGTEGPQPYLRLAIHGAAWLECQRCMTPYLQAFNVDATYRVVNTEAEAEE CCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH FPLDEDEVEVIVGSNHFDLIDLIEEELLLSLPLVPKHEVCPEVHESLVSGVAGAEGEEDE CCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHCCCCCCCCC SDESAPDEAGKGDEPERPSPFAALQSLKRGEPDDKKH CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA