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The map label for this gene is tdcF [C]

Identifier: 91784650

GI number: 91784650

Start: 3640179

End: 3640592

Strand: Reverse

Name: tdcF [C]

Synonym: Bxe_A1144

Alternate gene names: 91784650

Gene position: 3640592-3640179 (Counterclockwise)

Preceding gene: 91784659

Following gene: 91784649

Centisome position: 74.36

GC content: 60.39

Gene sequence:

>414_bases
ATGCGAACCATCAAGCCAACGCCACAGGTTCTGTTGCGGCGCATCGAACGGTCAGACGCGCTCCCGCCCCCTCACTTCCG
CTATTCGCCTGCAGTCCAGGTTGGCTCGGATGTCTATGTCTCGGGGCTTGTTGGTCTGGACCCGGCTACGGGCGGCCTGG
CCGCTGAAACGGCTGCGGGGCAGACCCGGCAAATCTTCAGGAATATCCAAGCCCTCTGTGCGGAACAAGGTTGGTCCCTT
GAGCGCGTTGTGGTGGCGCGTGTGTACTGCGCCGGCGAAGGTGCAGCAGATGGCATGAACGAGGTGTGGAGCGAATTTTT
TACTCAGCTCGCTCCACCCGCCAGAACCTTCACGGTCGTGAAGTCCCTCCCGCTGGGTGCTGCGGTGGAAATCGAGTTTC
AGTTGTCAATTTGA

Upstream 100 bases:

>100_bases
AACATAGGGTTATCACCTATATTCCGGTGCGTGGACGCCCCTTACGATAGTACGTATACGTTTCATACGGACGCAGACAA
TCAAAGGATCAGCGTAAACC

Downstream 100 bases:

>100_bases
GGAGAACTGCTATGAACGAAGGCAAGATTCTGTCCGGCCTCTTGGCGCCCCATCCGCCGCATCTGGTCTATGGGGAGAAC
CCGCCTCAGAACGAACCGAG

Product: putative endoribonuclease, translationalinhibitor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MRTIKPTPQVLLRRIERSDALPPPHFRYSPAVQVGSDVYVSGLVGLDPATGGLAAETAAGQTRQIFRNIQALCAEQGWSL
ERVVVARVYCAGEGAADGMNEVWSEFFTQLAPPARTFTVVKSLPLGAAVEIEFQLSI

Sequences:

>Translated_137_residues
MRTIKPTPQVLLRRIERSDALPPPHFRYSPAVQVGSDVYVSGLVGLDPATGGLAAETAAGQTRQIFRNIQALCAEQGWSL
ERVVVARVYCAGEGAADGMNEVWSEFFTQLAPPARTFTVVKSLPLGAAVEIEFQLSI
>Mature_137_residues
MRTIKPTPQVLLRRIERSDALPPPHFRYSPAVQVGSDVYVSGLVGLDPATGGLAAETAAGQTRQIFRNIQALCAEQGWSL
ERVVVARVYCAGEGAADGMNEVWSEFFTQLAPPARTFTVVKSLPLGAAVEIEFQLSI

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=122, Percent_Identity=31.1475409836066, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14800; Mature: 14800

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTIKPTPQVLLRRIERSDALPPPHFRYSPAVQVGSDVYVSGLVGLDPATGGLAAETAAG
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCEEEEEEEECCCCCCCCCCHHCCC
QTRQIFRNIQALCAEQGWSLERVVVARVYCAGEGAADGMNEVWSEFFTQLAPPARTFTVV
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
KSLPLGAAVEIEFQLSI
HHCCCCCEEEEEEEECC
>Mature Secondary Structure
MRTIKPTPQVLLRRIERSDALPPPHFRYSPAVQVGSDVYVSGLVGLDPATGGLAAETAAG
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCEEEEEEEECCCCCCCCCCHHCCC
QTRQIFRNIQALCAEQGWSLERVVVARVYCAGEGAADGMNEVWSEFFTQLAPPARTFTVV
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
KSLPLGAAVEIEFQLSI
HHCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]