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The map label for this gene is yjjV [H]

Identifier: 91784233

GI number: 91784233

Start: 3179848

End: 3180636

Strand: Reverse

Name: yjjV [H]

Synonym: Bxe_A1568

Alternate gene names: 91784233

Gene position: 3180636-3179848 (Counterclockwise)

Preceding gene: 91784234

Following gene: 91784232

Centisome position: 64.97

GC content: 64.51

Gene sequence:

>789_bases
ATGTGGATCGATACGCACTGCCATCTCGATGCTTCGGAATTCGACGCCGACCGCGCGCAAGTCGCGGCGGCGGCGCACCG
CGCGGGTGTGGGGCGGATCGTGATTCCGGCGATCGGCCGCGAGAACTTCGCAACGGTGCGCGAACTGGCGCACCGGGTCG
ACGGCGGCGCGTATGCGCTCGGCATCCATCCGCTGTTCACGCCGGCGGCGCAGGAGAGCGATCTGGCGGTGTTGCGCATG
GAAATCGAGGCGAATCTCGACGATCCGCGGTTCGTCGGCATCGGCGAAATCGGGCTCGATTATTTCGTCGACGGTCTCGA
CGACGCGCGCCAGCAATTCTTCTACAACGCTCAGCTGGAATTCGCGCGCGAATTCGATCTGCCGGTGATCTGCCATGTGC
GCAAATCGCAGGACCAGGTGATCAAGGGACTGCGGCGCCACCAGATTCATCGTGGTATCGCGCATGCATTCAACGGCAGT
TTCCAGCAGGCTCAGGCGTATATCGACCAGGGCATGCATCTCGGATTCGGCGGCAATCTGACGTTCGAGCGGGCGCGGCA
GATCCGCCGTCTTGCCGAACAGTTGCCGTTCGACGCGCTGGTCGTCGAGACCGATGCGCCGGACATCGCGCCTGCATGGA
TTTACAGGCAGCGCAATTCGCCGGAGCAGATTCCGGCGATCGGCGCGGGCCTCGCGGAACTGCGCGGCATGGCCGCCGAA
GAAGCCGCCCTAGGCACAACGGCTAACGCGCTCGCCGCGCTGCCGCGGCTCGCACTTTCCTCTGCATAA

Upstream 100 bases:

>100_bases
ATCATGCGGCTGCGCGACGGCGTGCTGCACGAAGAGCCGCCGGTGCCGGTCTGATTGCCGGACACCCTGCGCTGATGCTG
CGCCGCTAGCGAGGCACGTC

Downstream 100 bases:

>100_bases
TCGAACCCGGAAGGTCTGAGTGGTTCGCGCCGGGCGACATTCACGCTTGGCGGGCTCGCTGACGCCTGTGCTCAAGCGCT
GCTGCGCCCGGCATTTGCTG

Product: putative TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MWIDTHCHLDASEFDADRAQVAAAAHRAGVGRIVIPAIGRENFATVRELAHRVDGGAYALGIHPLFTPAAQESDLAVLRM
EIEANLDDPRFVGIGEIGLDYFVDGLDDARQQFFYNAQLEFAREFDLPVICHVRKSQDQVIKGLRRHQIHRGIAHAFNGS
FQQAQAYIDQGMHLGFGGNLTFERARQIRRLAEQLPFDALVVETDAPDIAPAWIYRQRNSPEQIPAIGAGLAELRGMAAE
EAALGTTANALAALPRLALSSA

Sequences:

>Translated_262_residues
MWIDTHCHLDASEFDADRAQVAAAAHRAGVGRIVIPAIGRENFATVRELAHRVDGGAYALGIHPLFTPAAQESDLAVLRM
EIEANLDDPRFVGIGEIGLDYFVDGLDDARQQFFYNAQLEFAREFDLPVICHVRKSQDQVIKGLRRHQIHRGIAHAFNGS
FQQAQAYIDQGMHLGFGGNLTFERARQIRRLAEQLPFDALVVETDAPDIAPAWIYRQRNSPEQIPAIGAGLAELRGMAAE
EAALGTTANALAALPRLALSSA
>Mature_262_residues
MWIDTHCHLDASEFDADRAQVAAAAHRAGVGRIVIPAIGRENFATVRELAHRVDGGAYALGIHPLFTPAAQESDLAVLRM
EIEANLDDPRFVGIGEIGLDYFVDGLDDARQQFFYNAQLEFAREFDLPVICHVRKSQDQVIKGLRRHQIHRGIAHAFNGS
FQQAQAYIDQGMHLGFGGNLTFERARQIRRLAEQLPFDALVVETDAPDIAPAWIYRQRNSPEQIPAIGAGLAELRGMAAE
EAALGTTANALAALPRLALSSA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=266, Percent_Identity=30.8270676691729, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI110349734, Length=266, Percent_Identity=30.8270676691729, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI226061853, Length=273, Percent_Identity=30.4029304029304, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI226061614, Length=259, Percent_Identity=29.7297297297297, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI226061595, Length=228, Percent_Identity=29.8245614035088, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI225903424, Length=226, Percent_Identity=27.8761061946903, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI87082439, Length=250, Percent_Identity=38.8, Blast_Score=174, Evalue=6e-45,
Organism=Escherichia coli, GI1787342, Length=254, Percent_Identity=29.9212598425197, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI48994985, Length=254, Percent_Identity=29.1338582677165, Blast_Score=96, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71980746, Length=261, Percent_Identity=22.9885057471264, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17559024, Length=277, Percent_Identity=23.1046931407942, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648690, Length=278, Percent_Identity=26.6187050359712, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI221330018, Length=216, Percent_Identity=28.7037037037037, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24586117, Length=216, Percent_Identity=28.7037037037037, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28730; Mature: 28730

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIDTHCHLDASEFDADRAQVAAAAHRAGVGRIVIPAIGRENFATVRELAHRVDGGAYAL
CEECCEECCCHHHHCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEE
GIHPLFTPAAQESDLAVLRMEIEANLDDPRFVGIGEIGLDYFVDGLDDARQQFFYNAQLE
ECCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEECHHHHHHHHCCHHHHHHHHHHCCHHH
FAREFDLPVICHVRKSQDQVIKGLRRHQIHRGIAHAFNGSFQQAQAYIDQGMHLGFGGNL
HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCC
TFERARQIRRLAEQLPFDALVVETDAPDIAPAWIYRQRNSPEQIPAIGAGLAELRGMAAE
CHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHEECCCCCCCCCHHHCCHHHHHCCHHH
EAALGTTANALAALPRLALSSA
HHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MWIDTHCHLDASEFDADRAQVAAAAHRAGVGRIVIPAIGRENFATVRELAHRVDGGAYAL
CEECCEECCCHHHHCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEE
GIHPLFTPAAQESDLAVLRMEIEANLDDPRFVGIGEIGLDYFVDGLDDARQQFFYNAQLE
ECCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEECHHHHHHHHCCHHHHHHHHHHCCHHH
FAREFDLPVICHVRKSQDQVIKGLRRHQIHRGIAHAFNGSFQQAQAYIDQGMHLGFGGNL
HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCC
TFERARQIRRLAEQLPFDALVVETDAPDIAPAWIYRQRNSPEQIPAIGAGLAELRGMAAE
CHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHEECCCCCCCCCHHHCCHHHHHCCHHH
EAALGTTANALAALPRLALSSA
HHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]