| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is comA [H]
Identifier: 91784232
GI number: 91784232
Start: 3176944
End: 3179349
Strand: Reverse
Name: comA [H]
Synonym: Bxe_A1569
Alternate gene names: 91784232
Gene position: 3179349-3176944 (Counterclockwise)
Preceding gene: 91784233
Following gene: 91784231
Centisome position: 64.94
GC content: 69.45
Gene sequence:
>2406_bases ATGCGCTCATTCGTCGGCTGGAGCGCGGTGTGGTGTGCGGCGTCGTGCACGGGCTTCGGCTACGCAGCCCTGCGCGCGGA CATGCGCCTCGCGGTGAGCTTACCCACCGCATGGGAAGGCCGCGATATCGAGGTTGTCGGCAGTATCAAAGGCCTGCCGT CACGCGATGAAAACGGCGCACGCTTTCTATTCGGCGTCGACCCGGCCGACGCGCCAATGGCCGCTTTCCCGCGCGTGATC CAACTGGCGTGGATCGCCGAAGATGCGCCGCCGCCGATCCTCGAACCCGGCGCACGCTGGCGGTTGACCGTGCGGCTGAA ACGTCCGCATGGCAATGCGAATTTCGGCGTGCGCGATGCCGAGGCGAATCTGCTCGCGCGCAATGTGCGGGCCACCGGCT ATGTGAGTGCGCCGGCTCACGCCGTGCGATTGCGCGGCGATGCGCGCGGTGTCGGCGTGACCGTGGACCGCTGGCGCGCC GCGCTGCGCGCACGCATCGACGCGGTGCTCGGCGATGCGCCGCACCGCGGAATCGTCGTGGCACTGGCGATCGGCGCGCA GGACGAAGTGAGCGCAGCGGACTGGCTGCTGATGCGCGGCACGGGTACGAGTCATCTGGTGGCGATTTCCGGGCTGCACC TTGGTTTCGTCGCGGGTCTTGCGGGCTGGCTCGCGGGCGCGTTATGGCGGCGCTCCGGCTGGATTGGCCGCGACTGGCCG TTGCGGCTGCCCGCGCAGGTCGTCGCGATCACGGGCGGCGCGCTGTTCGCCGCGCTGCACGCTGCATTGGCCGGTTTCAA CGTGCCGGCGCAGCGCGCGCTGTGGATGGCGGGCGTCGTCGCGCTCGCGTTTGTCAGCGGGCGCAGCGTGGCACGCTCGG CGGTGCTCGCGTGGGCCTTGGGACTGGTGCTGCTGATCGATCCGTGGGCGGTCGTCTCGGCGGGATTCTGGTTGTCGTTC TGCGCGGTGGCGGCAATTCTGTTCGCCATGTCCGGGCGGCCGCGCGTGCAGGATCATGAACAGCACCACGATCAGGCGAA CGAGGGCGGCGAGCCATCGTCCCCGTTGCCCAGACTGCGTGCCGGGTTGCTGCGTCACGTGCGCGGCGTGGGCGAACGGC TGCGCAGCGCGGCACACGTGCAGTTCGCCGTCACGGTCGCGCTCGCGCCGCTAACCGTCTACTGGTTCGCGCAGATTCCG CTGATCGGCCCGCTCGCGAATGCCTTCGCGATTCCGTGGGTCAGCCTGCTGGTCACGCCGGCGATACTCGCCGGCGTCGC GTTGCCCGCGCCGCTCGACGTCCACGCATGGCATGTCGCTCACGCTTTGCTGGAGTGGCTGGCCGCGGGCTTGCTGTGGT TCTCGGGGCCTCCCTGGCTGCTCTGGCGCCTGCCGCAGCCGGATGCGTGGACGCTGGCCGCGGCGGCGTTGGGTGTGCTC TGGTGTCTCGCGCCGCGCGGCTGGCCGCTGCGCTGGGCCGCGCCGCTCACATGGTTGCCGCTCCTGATGCCGGCGCCGTC CGGGCCGCCGCAGGGCGGTTTCCGGCTAACCGCGCTGGATGTCGGTCAAGGTACGTCCGTGCTGGTCGAAACGGCGCATC ACACGTTGCTGTTCGATACGGGGCCGGGCCCGGAATCGACTCACGCGGGCGAGCGGGTGGTCGTGCCATTCCTGCAGGCA CACGGCGTGAACGCGCTCGATACGCTGATCGTCAGTCACGCCGATTCCGATCATTCGGGCGGCGCGCCCGCCGTTCTGGA CGCGATCGAGGTGCGTCAGATGGTGGCGGCGCTGGCGCCGTCGAATGCATTGTGGCTGAACGCGCGGCGGCACGGCGCCG CCACGCTGCCGTGCGCGGCGGGGCAGCGCTGGCAGTGGGACGGTGTCGAGTTCGCGATGCTCTGGCCCGACGCCGGTCCG CTGCAAGGCAAGCCGAACATGCATTGCTGCGTGTTGCGGGTGAGCACGCTGCCGCCCGCGACGAGCCGGCCGGCCGCGCG CGTTCAAACGGAGCCGCCGCGCATGGCCGCCTTGCTGACGGCGGATATCGAGGCACCTGTCGAACGCACTCTGCTCGCGC GCGATCGCGGCGCGTTGCGCGCACAGGTGCTGGTCGTGCCGCATCACGGCAGCAAGACTTCGTCGACCGAGCCGTTCCTC GATTCTATCGACCCGCTCATCGCGCTATTTCAGGTAGGCTATCGCAACCGTTTTCATCATCCGGATGCGAGGGTGTTCGA GCGCTACAAGGCGCGGCAGATCGAGCTTGGGCGCAGCGACACGGACGGCGCGGTGCGAGTCGAAGTGAACCCGGAAGCCG GCGCGAAGAGCGCCGCCACAGAGAACATCGCGCTGACGCTCGATCGTTATCGCGACACACAGCACCGTTACTGGATGGAC CGCTAA
Upstream 100 bases:
>100_bases AGTTGCGCCCACGGCAAAGGCCACCCCTACGCCGACACATCGCGCGCACGCGCTCGCGGCTCTCACTTCGCTAATACGCC GTGTCCGCTTCGGCCCGCGC
Downstream 100 bases:
>100_bases CAGGTGCGCCGGTAGGTGCGCTGGTGAAATGCCGGCCGCATGGATAGACGAAGCGCAGCAGGGCCGCACAGAAAGCGTGC CGCTGGCTGAAGCGCCTGTA
Product: ComEC/Rec2-related protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 801; Mature: 801
Protein sequence:
>801_residues MRSFVGWSAVWCAASCTGFGYAALRADMRLAVSLPTAWEGRDIEVVGSIKGLPSRDENGARFLFGVDPADAPMAAFPRVI QLAWIAEDAPPPILEPGARWRLTVRLKRPHGNANFGVRDAEANLLARNVRATGYVSAPAHAVRLRGDARGVGVTVDRWRA ALRARIDAVLGDAPHRGIVVALAIGAQDEVSAADWLLMRGTGTSHLVAISGLHLGFVAGLAGWLAGALWRRSGWIGRDWP LRLPAQVVAITGGALFAALHAALAGFNVPAQRALWMAGVVALAFVSGRSVARSAVLAWALGLVLLIDPWAVVSAGFWLSF CAVAAILFAMSGRPRVQDHEQHHDQANEGGEPSSPLPRLRAGLLRHVRGVGERLRSAAHVQFAVTVALAPLTVYWFAQIP LIGPLANAFAIPWVSLLVTPAILAGVALPAPLDVHAWHVAHALLEWLAAGLLWFSGPPWLLWRLPQPDAWTLAAAALGVL WCLAPRGWPLRWAAPLTWLPLLMPAPSGPPQGGFRLTALDVGQGTSVLVETAHHTLLFDTGPGPESTHAGERVVVPFLQA HGVNALDTLIVSHADSDHSGGAPAVLDAIEVRQMVAALAPSNALWLNARRHGAATLPCAAGQRWQWDGVEFAMLWPDAGP LQGKPNMHCCVLRVSTLPPATSRPAARVQTEPPRMAALLTADIEAPVERTLLARDRGALRAQVLVVPHHGSKTSSTEPFL DSIDPLIALFQVGYRNRFHHPDARVFERYKARQIELGRSDTDGAVRVEVNPEAGAKSAATENIALTLDRYRDTQHRYWMD R
Sequences:
>Translated_801_residues MRSFVGWSAVWCAASCTGFGYAALRADMRLAVSLPTAWEGRDIEVVGSIKGLPSRDENGARFLFGVDPADAPMAAFPRVI QLAWIAEDAPPPILEPGARWRLTVRLKRPHGNANFGVRDAEANLLARNVRATGYVSAPAHAVRLRGDARGVGVTVDRWRA ALRARIDAVLGDAPHRGIVVALAIGAQDEVSAADWLLMRGTGTSHLVAISGLHLGFVAGLAGWLAGALWRRSGWIGRDWP LRLPAQVVAITGGALFAALHAALAGFNVPAQRALWMAGVVALAFVSGRSVARSAVLAWALGLVLLIDPWAVVSAGFWLSF CAVAAILFAMSGRPRVQDHEQHHDQANEGGEPSSPLPRLRAGLLRHVRGVGERLRSAAHVQFAVTVALAPLTVYWFAQIP LIGPLANAFAIPWVSLLVTPAILAGVALPAPLDVHAWHVAHALLEWLAAGLLWFSGPPWLLWRLPQPDAWTLAAAALGVL WCLAPRGWPLRWAAPLTWLPLLMPAPSGPPQGGFRLTALDVGQGTSVLVETAHHTLLFDTGPGPESTHAGERVVVPFLQA HGVNALDTLIVSHADSDHSGGAPAVLDAIEVRQMVAALAPSNALWLNARRHGAATLPCAAGQRWQWDGVEFAMLWPDAGP LQGKPNMHCCVLRVSTLPPATSRPAARVQTEPPRMAALLTADIEAPVERTLLARDRGALRAQVLVVPHHGSKTSSTEPFL DSIDPLIALFQVGYRNRFHHPDARVFERYKARQIELGRSDTDGAVRVEVNPEAGAKSAATENIALTLDRYRDTQHRYWMD R >Mature_801_residues MRSFVGWSAVWCAASCTGFGYAALRADMRLAVSLPTAWEGRDIEVVGSIKGLPSRDENGARFLFGVDPADAPMAAFPRVI QLAWIAEDAPPPILEPGARWRLTVRLKRPHGNANFGVRDAEANLLARNVRATGYVSAPAHAVRLRGDARGVGVTVDRWRA ALRARIDAVLGDAPHRGIVVALAIGAQDEVSAADWLLMRGTGTSHLVAISGLHLGFVAGLAGWLAGALWRRSGWIGRDWP LRLPAQVVAITGGALFAALHAALAGFNVPAQRALWMAGVVALAFVSGRSVARSAVLAWALGLVLLIDPWAVVSAGFWLSF CAVAAILFAMSGRPRVQDHEQHHDQANEGGEPSSPLPRLRAGLLRHVRGVGERLRSAAHVQFAVTVALAPLTVYWFAQIP LIGPLANAFAIPWVSLLVTPAILAGVALPAPLDVHAWHVAHALLEWLAAGLLWFSGPPWLLWRLPQPDAWTLAAAALGVL WCLAPRGWPLRWAAPLTWLPLLMPAPSGPPQGGFRLTALDVGQGTSVLVETAHHTLLFDTGPGPESTHAGERVVVPFLQA HGVNALDTLIVSHADSDHSGGAPAVLDAIEVRQMVAALAPSNALWLNARRHGAATLPCAAGQRWQWDGVEFAMLWPDAGP LQGKPNMHCCVLRVSTLPPATSRPAARVQTEPPRMAALLTADIEAPVERTLLARDRGALRAQVLVVPHHGSKTSSTEPFL DSIDPLIALFQVGYRNRFHHPDARVFERYKARQIELGRSDTDGAVRVEVNPEAGAKSAATENIALTLDRYRDTQHRYWMD R
Specific function: Essential for natural transformation. Could be a transporter involved in DNA uptake [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis ComEC, H.influenzae REC2, and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=711, Percent_Identity=29.3952180028129, Blast_Score=207, Evalue=3e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 86102; Mature: 86102
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSFVGWSAVWCAASCTGFGYAALRADMRLAVSLPTAWEGRDIEVVGSIKGLPSRDENGA CCCCCCHHHHHHHHHCCCCCHHHHHHCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCC RFLFGVDPADAPMAAFPRVIQLAWIAEDAPPPILEPGARWRLTVRLKRPHGNANFGVRDA EEEEECCCCCCCHHHHHHHHEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEECC EANLLARNVRATGYVSAPAHAVRLRGDARGVGVTVDRWRAALRARIDAVLGDAPHRGIVV HHHHHHHCCCCCEEECCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCEEE ALAIGAQDEVSAADWLLMRGTGTSHLVAISGLHLGFVAGLAGWLAGALWRRSGWIGRDWP EEEECCCCCCCCCCEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCC LRLPAQVVAITGGALFAALHAALAGFNVPAQRALWMAGVVALAFVSGRSVARSAVLAWAL CCCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH GLVLLIDPWAVVSAGFWLSFCAVAAILFAMSGRPRVQDHEQHHDQANEGGEPSSPLPRLR HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHH AGLLRHVRGVGERLRSAAHVQFAVTVALAPLTVYWFAQIPLIGPLANAFAIPWVSLLVTP HHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH AILAGVALPAPLDVHAWHVAHALLEWLAAGLLWFSGPPWLLWRLPQPDAWTLAAAALGVL HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH WCLAPRGWPLRWAAPLTWLPLLMPAPSGPPQGGFRLTALDVGQGTSVLVETAHHTLLFDT HHHCCCCCCEEECCCHHHHHHEECCCCCCCCCCEEEEEEECCCCCEEEEEECCEEEEEEC GPGPESTHAGERVVVPFLQAHGVNALDTLIVSHADSDHSGGAPAVLDAIEVRQMVAALAP CCCCCCCCCCCEEEEEHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC SNALWLNARRHGAATLPCAAGQRWQWDGVEFAMLWPDAGPLQGKPNMHCCVLRVSTLPPA CCEEEEECCCCCCEECCCCCCCCEEECCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCC TSRPAARVQTEPPRMAALLTADIEAPVERTLLARDRGALRAQVLVVPHHGSKTSSTEPFL CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHH DSIDPLIALFQVGYRNRFHHPDARVFERYKARQIELGRSDTDGAVRVEVNPEAGAKSAAT HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEEECCCCCCCCEEEEEECCCCCCCCCCC ENIALTLDRYRDTQHRYWMDR CCEEEEEEHHCCCCCCCCCCC >Mature Secondary Structure MRSFVGWSAVWCAASCTGFGYAALRADMRLAVSLPTAWEGRDIEVVGSIKGLPSRDENGA CCCCCCHHHHHHHHHCCCCCHHHHHHCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCC RFLFGVDPADAPMAAFPRVIQLAWIAEDAPPPILEPGARWRLTVRLKRPHGNANFGVRDA EEEEECCCCCCCHHHHHHHHEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEECC EANLLARNVRATGYVSAPAHAVRLRGDARGVGVTVDRWRAALRARIDAVLGDAPHRGIVV HHHHHHHCCCCCEEECCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCEEE ALAIGAQDEVSAADWLLMRGTGTSHLVAISGLHLGFVAGLAGWLAGALWRRSGWIGRDWP EEEECCCCCCCCCCEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCC LRLPAQVVAITGGALFAALHAALAGFNVPAQRALWMAGVVALAFVSGRSVARSAVLAWAL CCCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH GLVLLIDPWAVVSAGFWLSFCAVAAILFAMSGRPRVQDHEQHHDQANEGGEPSSPLPRLR HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHH AGLLRHVRGVGERLRSAAHVQFAVTVALAPLTVYWFAQIPLIGPLANAFAIPWVSLLVTP HHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH AILAGVALPAPLDVHAWHVAHALLEWLAAGLLWFSGPPWLLWRLPQPDAWTLAAAALGVL HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH WCLAPRGWPLRWAAPLTWLPLLMPAPSGPPQGGFRLTALDVGQGTSVLVETAHHTLLFDT HHHCCCCCCEEECCCHHHHHHEECCCCCCCCCCEEEEEEECCCCCEEEEEECCEEEEEEC GPGPESTHAGERVVVPFLQAHGVNALDTLIVSHADSDHSGGAPAVLDAIEVRQMVAALAP CCCCCCCCCCCEEEEEHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC SNALWLNARRHGAATLPCAAGQRWQWDGVEFAMLWPDAGPLQGKPNMHCCVLRVSTLPPA CCEEEEECCCCCCEECCCCCCCCEEECCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCC TSRPAARVQTEPPRMAALLTADIEAPVERTLLARDRGALRAQVLVVPHHGSKTSSTEPFL CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHH DSIDPLIALFQVGYRNRFHHPDARVFERYKARQIELGRSDTDGAVRVEVNPEAGAKSAAT HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEEECCCCCCCCEEEEEECCCCCCCCCCC ENIALTLDRYRDTQHRYWMDR CCEEEEEEHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934834; 8830266 [H]