Click here to switch to the map view.

The map label for this gene is yciO [H]

Identifier: 91784220

GI number: 91784220

Start: 3164877

End: 3165512

Strand: Reverse

Name: yciO [H]

Synonym: Bxe_A1581

Alternate gene names: 91784220

Gene position: 3165512-3164877 (Counterclockwise)

Preceding gene: 91784221

Following gene: 91784219

Centisome position: 64.66

GC content: 65.57

Gene sequence:

>636_bases
ATGTCCCGATACTTCCGGCTTCATCCCGACAACCCGCAGCCGCGCCTCGTCAAGCAGGCCGTGCAGATCATCAAGGATGG
CGGCGTGGTCGCGCTGCCGACGGACTCCAGCTACGCGCTCGCCTGCCACCTGGACGACAAGGACGCGGTCGAGCGTCTGC
GGCGCATTCGCGGACTGGACGAGAAGCAGTTGCTGTCGCTGCTGGTGCGCGATCTGTCGGAACTTTCGAATTTCGCGATG
GTAGACAACCGGCAGTACCGGCTGATCAAATCGGTGACGCCCGGCCCGTACGTATTCGTGTTGCAGGCCACCAAGGAGGT
GCCGCGGCGCCTCTCGCACCCGTCGCGCAAGACCATCGGCCTGCGCGTGCCGGATCACGCGATCACGCTGGCGATTCTCG
AGGAACTCGGCCAGCCGCTGCTCGGCTCCACGCTGATCATGCCGGGCGAAACCCAGCCGCTGAACGACCCGGAGGAAATT
CGCGCGCGCCTGGAAAAGCAGCTGGATCTGGTGATCGACGGCGGTCCTTGCGTATGCGAGCCTTCCACGGTGATCGATCT
GACCGGTGCGGAACCGGTGCTGGTGCGGGCAGGGCGCGGTTCTCTCGCGCCGTTCGGCCTCGCAGAGACGGCATGA

Upstream 100 bases:

>100_bases
GCGCGCGGCGCATGCCTGGCGTCCGGGCTTCCGGCCGGCTTTCGACCAGCGTCGGTTTGCCGATCATCCGCTGTTCATCC
GTCAGCCAACGTTAGTCGCC

Downstream 100 bases:

>100_bases
GTGAAAGCGGACAGACGCACGCAATCGCGTTGTTACAATAACGAGTTATGGATTCCTCCCTGATACAGACCATTGCGGTA
TACGCGTTGCCCGTGATTTT

Product: Sua5/YciO/YrdC/YwlC family translation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSRYFRLHPDNPQPRLVKQAVQIIKDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLSELSNFAM
VDNRQYRLIKSVTPGPYVFVLQATKEVPRRLSHPSRKTIGLRVPDHAITLAILEELGQPLLGSTLIMPGETQPLNDPEEI
RARLEKQLDLVIDGGPCVCEPSTVIDLTGAEPVLVRAGRGSLAPFGLAETA

Sequences:

>Translated_211_residues
MSRYFRLHPDNPQPRLVKQAVQIIKDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLSELSNFAM
VDNRQYRLIKSVTPGPYVFVLQATKEVPRRLSHPSRKTIGLRVPDHAITLAILEELGQPLLGSTLIMPGETQPLNDPEEI
RARLEKQLDLVIDGGPCVCEPSTVIDLTGAEPVLVRAGRGSLAPFGLAETA
>Mature_210_residues
SRYFRLHPDNPQPRLVKQAVQIIKDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLSELSNFAMV
DNRQYRLIKSVTPGPYVFVLQATKEVPRRLSHPSRKTIGLRVPDHAITLAILEELGQPLLGSTLIMPGETQPLNDPEEIR
ARLEKQLDLVIDGGPCVCEPSTVIDLTGAEPVLVRAGRGSLAPFGLAETA

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=54.6341463414634, Blast_Score=236, Evalue=6e-64,
Organism=Escherichia coli, GI2367210, Length=165, Percent_Identity=26.0606060606061, Blast_Score=65, Evalue=3e-12,
Organism=Drosophila melanogaster, GI78707274, Length=188, Percent_Identity=31.9148936170213, Blast_Score=77, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23257; Mature: 23126

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRYFRLHPDNPQPRLVKQAVQIIKDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLD
CCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHCCC
EKQLLSLLVRDLSELSNFAMVDNRQYRLIKSVTPGPYVFVLQATKEVPRRLSHPSRKTIG
HHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCCCCEEEEEECHHHHHHHHCCCCCCEEE
LRVPDHAITLAILEELGQPLLGSTLIMPGETQPLNDPEEIRARLEKQLDLVIDGGPCVCE
EECCCHHHHHHHHHHHCCCHHCCEEECCCCCCCCCCHHHHHHHHHHCEEEEECCCCCEEC
PSTVIDLTGAEPVLVRAGRGSLAPFGLAETA
CCCEEEECCCCEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRYFRLHPDNPQPRLVKQAVQIIKDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLD
CCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHCCC
EKQLLSLLVRDLSELSNFAMVDNRQYRLIKSVTPGPYVFVLQATKEVPRRLSHPSRKTIG
HHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCCCCEEEEEECHHHHHHHHCCCCCCEEE
LRVPDHAITLAILEELGQPLLGSTLIMPGETQPLNDPEEIRARLEKQLDLVIDGGPCVCE
EECCCHHHHHHHHHHHCCCHHCCEEECCCCCCCCCCHHHHHHHHHHCEEEEECCCCCEEC
PSTVIDLTGAEPVLVRAGRGSLAPFGLAETA
CCCEEEECCCCEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]