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The map label for this gene is hfq [H]

Identifier: 91784202

GI number: 91784202

Start: 3146335

End: 3146571

Strand: Reverse

Name: hfq [H]

Synonym: Bxe_A1599

Alternate gene names: 91784202

Gene position: 3146571-3146335 (Counterclockwise)

Preceding gene: 91784203

Following gene: 91784201

Centisome position: 64.27

GC content: 52.74

Gene sequence:

>237_bases
ATGAGCAACAAAGGGCAATTGTTACAAGACCCGTTTTTGAACGCACTGCGTAAAGAGCATGTGCCGGTGTCGATCTACCT
GGTCAACGGCATCAAGCTTCAAGGGAACATCGAATCGTTCGACCAGTACGTCGTGTTGCTCCGGAATACGGTCACCCAGA
TGGTCTACAAGCACGCAATCTCGACTGTCGTGCCAGCCCGCCCGGTGAATTTCCACCCGGATTCCGAACAGTCCTAA

Upstream 100 bases:

>100_bases
CGCGCAAAAATGAAAATCGGCTATAGTGTAGCGGTTGACGGCGGATCTCTTTTTCTTCGTCGTCAATTAAGTCAACCTGC
AAAAAAATACGGAGTTTGCT

Downstream 100 bases:

>100_bases
CCCCCGTCGCGGCCGGCGTAACGTCGCCCGTTGGCGATTACTCCCGGCCGCCTCATTTTGATATCCTCCAATTTGATCAA
TGCAGCGCTTGTCGGCATCG

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 77

Protein sequence:

>78_residues
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDSEQS

Sequences:

>Translated_78_residues
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDSEQS
>Mature_77_residues
SNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDSEQS

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=71, Percent_Identity=81.6901408450704, Blast_Score=126, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8835; Mature: 8704

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STVVPARPVNFHPDSEQS
HHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STVVPARPVNFHPDSEQS
HHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA