| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is yoaA [H]
Identifier: 91784189
GI number: 91784189
Start: 3130201
End: 3132456
Strand: Reverse
Name: yoaA [H]
Synonym: Bxe_A1612
Alternate gene names: 91784189
Gene position: 3132456-3130201 (Counterclockwise)
Preceding gene: 91784190
Following gene: 91784188
Centisome position: 63.98
GC content: 65.56
Gene sequence:
>2256_bases TTGAATTCACCGCTTGAAACTTCATCCCGTGCCACGCCGGGCGAGGACGCAGCCAGCGCCGTTACACCGGCGCCGCGTCC CGCCGCGTCCGCATTGAGCGCGTCGCTGAACCCGCGCCGCGCCGCCGAACTGGACGAGATCTTCGCCGACAACGGCTTGC TGGCCCGGCAGATCGACGGCTACCGCTCGCGCGCGTCGCAGATCGAAATGTCACGCGCCGTGGCCGCGGCAATGGAGGCG TCGGGCCGCGCGATGCCCGAGCCCGCGATGTTCGAGGCGCAGAAGCGTCCGGCACGGCGTCTGCAGGCGCCGGGTGCGGA TGCCGTCGCCGAGGCCGCTGAGAGCGCCGAATCGGGCGGACTCGACGGCAGCGAAAACACGCTGATCGTCGAAGCCGGTA CGGGCACGGGCAAGACCTACGCGTATCTCGTGCCGGCCATGCTGTGGGGCGGCAAGGTAATCGTCTCCACCGGCACGAAG CATCTGCAGGATCAGCTTTTTCAGCGCGATATTCCGACCGTGCGCGATGCGCTCGCGGTGCCGGTCTCGGTCGCAATGCT CAAGGGGCGCGCGAATTACCTGTGCCACTACTATCTGCAGCGCACCGCGGATAACGGCCGTCTGCCGTCGCGTCAGGAAA CCTCGTATCTGCAGGATATCGTGCGCTTCGCCAAGATCACGCGCACCGGCGACAAGGCCGAACTGGCCAGCGTGCCCGAA ACGGCGGCGGTGTGGTCGATGGTCACGTCGACACGCGAAAACTGTCTTGGCCAGGAGTGCCCGCATTACAAGGACTGCTT CGTAATGCAGGCGCGCCGCGAGGCGCAGCAGGCGGATATCGTGGTGGTGAACCACCATCTGTTTTTCGCCGACATCATGT TGCGCGACACGGGCATGGCTGAACTGCTGCCCACCGCCAACACCATCATCTTCGACGAAGCGCACCAGTTGCCCGAAACC GCAACGTTGTTTTTCGGCGAGACACTCTCGACCACGCAGTTTCTCGAACTGGCTCGCGATTCGGTGGCCGAGGGTCTGGG TCATGCGCGCGAAACGGTCGATTGGGTCACGCTCGGCTCCACGCTCGAGCGCGCGGCGCGCGACGTGCGGCTTGCCTTCA AGGAAGACTCGGTGCGCCTGTCGATCGGCCAGTTGCCGGACGATCATCCATTGTTCCCCGCACTGGAAACGCTGGAGACC GAGCTCGATGCCCTTGCGTCCGCGCTGGCGGGGCAGGCCGAGCGCGCCGAATCGATCGGCGCGTGTCTGCGCCGCGCCCG CGAACTGCAAGGCGTGCTTGCCGGCTGGACCACACCGCCCACGCAGGCCGAGCGCGAGGCCGCTGACACAGCCTCGGCGG ACGGCAAGGCCGAGCGCGCCGACCCGAATGAAAAGGTGCGCTGGGTCGAAGTCTTTTCGCATACCGTGCAGTTGCACGAA ACGCCGTTGTCGGTCGCGCCGATTTTCGCGAAGCAGCGCGCCGGCGTGCCGCGCGCGTGGATTTTCACGTCGGCCACGCT GTCGGTGCGCGGCGATTTCACGCACTACGCCGCGCAGATGGGCCTGAACGCGAAGCGCTCGATGACGCTGCCCAGTCCCT TCGATTATCCGACGCAGGGGTTGCTATACGTGCCGCGCAATTTGCCGCAGCCGTCTTCGCCGATGTTCACCGACGCCGTG TTCGACGCCGCATTGCCGGCGATCGAGGCATCGGGCGGTGGCGTCTTCATGTTATGCACGACGCTGCGCGCGGTGGACCG CATCTCGGCCAAGCTACGCGACACGATCGAGGCGCGCGGCTGGAACTATCCGCTGCTCGTGCAGGGCGACGCGAGCCGCA CCGAGCTGCTGGATCGCTTCCGCTCGTATGGCAACGCGATTCTGGTGGGCAGCCAGAGCTTCTGGGAGGGCGTGGATGTG CGCGGCGACGCATTGTCGCTGGTGGTGATCGACAAGCTGCCGTTTGCGCCGCCCGACGATCCGGTTCTGTCGGCGCGTCT CGATGCGTTGACCAAAAAAGGTTTGAGCCCGTTCGCCGTGCATCAGCTGCCGCAGGCGGTGATTACCCTCAAGCAGGGCG CAGGGCGCCTGATCCGCGCTGAGACCGATCGCGGCGTGCTGATGATCTGCGATACGCGACTCGTCGACAAACCGTATGGG CGCCGTATCTGGCAGAGCCTGCCGCCATTTAAACGCACACGCGAGATCGAGGTAGTGCGCGAGTTTTTCGAAGAGAACGA AACGCCGGCTCAATAG
Upstream 100 bases:
>100_bases CTGCAATTGCAGCTCGAACCGGACGCACGCGCCTGAGTTCGCGGCCTGGCAGGCGCCGGGCGCGCGTCGCGCGAGCCGGA CTTTGCAGGAAACGCTTGCC
Downstream 100 bases:
>100_bases CTGATTGGAATCAATAAGCGCCGTTGTAAATAGCGGCTCTTAAATGACAAAACGCCACGGATGTGAGTCCGTGGCGTTTT GCTTTACTGCCCGGGAAATC
Product: putative ATP-dependent helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 751; Mature: 751
Protein sequence:
>751_residues MNSPLETSSRATPGEDAASAVTPAPRPAASALSASLNPRRAAELDEIFADNGLLARQIDGYRSRASQIEMSRAVAAAMEA SGRAMPEPAMFEAQKRPARRLQAPGADAVAEAAESAESGGLDGSENTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTK HLQDQLFQRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQETSYLQDIVRFAKITRTGDKAELASVPE TAAVWSMVTSTRENCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPTANTIIFDEAHQLPET ATLFFGETLSTTQFLELARDSVAEGLGHARETVDWVTLGSTLERAARDVRLAFKEDSVRLSIGQLPDDHPLFPALETLET ELDALASALAGQAERAESIGACLRRARELQGVLAGWTTPPTQAEREAADTASADGKAERADPNEKVRWVEVFSHTVQLHE TPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFTHYAAQMGLNAKRSMTLPSPFDYPTQGLLYVPRNLPQPSSPMFTDAV FDAALPAIEASGGGVFMLCTTLRAVDRISAKLRDTIEARGWNYPLLVQGDASRTELLDRFRSYGNAILVGSQSFWEGVDV RGDALSLVVIDKLPFAPPDDPVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYG RRIWQSLPPFKRTREIEVVREFFEENETPAQ
Sequences:
>Translated_751_residues MNSPLETSSRATPGEDAASAVTPAPRPAASALSASLNPRRAAELDEIFADNGLLARQIDGYRSRASQIEMSRAVAAAMEA SGRAMPEPAMFEAQKRPARRLQAPGADAVAEAAESAESGGLDGSENTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTK HLQDQLFQRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQETSYLQDIVRFAKITRTGDKAELASVPE TAAVWSMVTSTRENCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPTANTIIFDEAHQLPET ATLFFGETLSTTQFLELARDSVAEGLGHARETVDWVTLGSTLERAARDVRLAFKEDSVRLSIGQLPDDHPLFPALETLET ELDALASALAGQAERAESIGACLRRARELQGVLAGWTTPPTQAEREAADTASADGKAERADPNEKVRWVEVFSHTVQLHE TPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFTHYAAQMGLNAKRSMTLPSPFDYPTQGLLYVPRNLPQPSSPMFTDAV FDAALPAIEASGGGVFMLCTTLRAVDRISAKLRDTIEARGWNYPLLVQGDASRTELLDRFRSYGNAILVGSQSFWEGVDV RGDALSLVVIDKLPFAPPDDPVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYG RRIWQSLPPFKRTREIEVVREFFEENETPAQ >Mature_751_residues MNSPLETSSRATPGEDAASAVTPAPRPAASALSASLNPRRAAELDEIFADNGLLARQIDGYRSRASQIEMSRAVAAAMEA SGRAMPEPAMFEAQKRPARRLQAPGADAVAEAAESAESGGLDGSENTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTK HLQDQLFQRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQETSYLQDIVRFAKITRTGDKAELASVPE TAAVWSMVTSTRENCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPTANTIIFDEAHQLPET ATLFFGETLSTTQFLELARDSVAEGLGHARETVDWVTLGSTLERAARDVRLAFKEDSVRLSIGQLPDDHPLFPALETLET ELDALASALAGQAERAESIGACLRRARELQGVLAGWTTPPTQAEREAADTASADGKAERADPNEKVRWVEVFSHTVQLHE TPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFTHYAAQMGLNAKRSMTLPSPFDYPTQGLLYVPRNLPQPSSPMFTDAV FDAALPAIEASGGGVFMLCTTLRAVDRISAKLRDTIEARGWNYPLLVQGDASRTELLDRFRSYGNAILVGSQSFWEGVDV RGDALSLVVIDKLPFAPPDDPVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYG RRIWQSLPPFKRTREIEVVREFFEENETPAQ
Specific function: Unknown
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase ATP-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=710, Percent_Identity=41.5492957746479, Blast_Score=491, Evalue=1e-140, Organism=Escherichia coli, GI1787018, Length=241, Percent_Identity=35.2697095435685, Blast_Score=116, Evalue=5e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR006935 [H]
Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 81927; Mature: 81927
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSPLETSSRATPGEDAASAVTPAPRPAASALSASLNPRRAAELDEIFADNGLLARQIDG CCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHH YRSRASQIEMSRAVAAAMEASGRAMPEPAMFEAQKRPARRLQAPGADAVAEAAESAESGG HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHCCC LDGSENTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQLFQRDIPTVRDALAV CCCCCCEEEEECCCCCCCCHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCHHHHHHHHH PVSVAMLKGRANYLCHYYLQRTADNGRLPSRQETSYLQDIVRFAKITRTGDKAELASVPE HHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH TAAVWSMVTSTRENCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMA HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECHHEEHHHHHHCCCHH ELLPTANTIIFDEAHQLPETATLFFGETLSTTQFLELARDSVAEGLGHARETVDWVTLGS HHCCCCCEEEECCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLERAARDVRLAFKEDSVRLSIGQLPDDHPLFPALETLETELDALASALAGQAERAESIG HHHHHHHHHEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH ACLRRARELQGVLAGWTTPPTQAEREAADTASADGKAERADPNEKVRWVEVFSHTVQLHE HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC TPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFTHYAAQMGLNAKRSMTLPSPFDYPTQG CCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC LLYVPRNLPQPSSPMFTDAVFDAALPAIEASGGGVFMLCTTLRAVDRISAKLRDTIEARG EEECCCCCCCCCCCCHHHHHHHHHHCCEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCC WNYPLLVQGDASRTELLDRFRSYGNAILVGSQSFWEGVDVRGDALSLVVIDKLPFAPPDD CCCCEEEECCCHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCEEEEEEEECCCCCCCCC PVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYG HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHCCCHH RRIWQSLPPFKRTREIEVVREFFEENETPAQ HHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MNSPLETSSRATPGEDAASAVTPAPRPAASALSASLNPRRAAELDEIFADNGLLARQIDG CCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHH YRSRASQIEMSRAVAAAMEASGRAMPEPAMFEAQKRPARRLQAPGADAVAEAAESAESGG HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHCCC LDGSENTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQLFQRDIPTVRDALAV CCCCCCEEEEECCCCCCCCHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCHHHHHHHHH PVSVAMLKGRANYLCHYYLQRTADNGRLPSRQETSYLQDIVRFAKITRTGDKAELASVPE HHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH TAAVWSMVTSTRENCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMA HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECHHEEHHHHHHCCCHH ELLPTANTIIFDEAHQLPETATLFFGETLSTTQFLELARDSVAEGLGHARETVDWVTLGS HHCCCCCEEEECCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLERAARDVRLAFKEDSVRLSIGQLPDDHPLFPALETLETELDALASALAGQAERAESIG HHHHHHHHHEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH ACLRRARELQGVLAGWTTPPTQAEREAADTASADGKAERADPNEKVRWVEVFSHTVQLHE HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC TPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFTHYAAQMGLNAKRSMTLPSPFDYPTQG CCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC LLYVPRNLPQPSSPMFTDAVFDAALPAIEASGGGVFMLCTTLRAVDRISAKLRDTIEARG EEECCCCCCCCCCCCHHHHHHHHHHCCEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCC WNYPLLVQGDASRTELLDRFRSYGNAILVGSQSFWEGVDVRGDALSLVVIDKLPFAPPDD CCCCEEEECCCHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCEEEEEEEECCCCCCCCC PVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYG HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHCCCHH RRIWQSLPPFKRTREIEVVREFFEENETPAQ HHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]