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The map label for this gene is ydhO [H]

Identifier: 91784161

GI number: 91784161

Start: 3098259

End: 3098924

Strand: Reverse

Name: ydhO [H]

Synonym: Bxe_A1640

Alternate gene names: 91784161

Gene position: 3098924-3098259 (Counterclockwise)

Preceding gene: 91784162

Following gene: 91784159

Centisome position: 63.3

GC content: 61.41

Gene sequence:

>666_bases
ATGCAGCACAGAAACCTAACCCAGGCTTGCACGCGCGTCGTCGCCGGGATGTTCATTGGCGTCTTGATGGCAGCAACTCC
CGGCGCGTTCGCCGACGAAGTAAGCAGTTTCAATCAGAATGCCTCATATTCGACCCTCGGCGGGTCGAATTCTTCGCCCA
CTCCCAATTCTCAAGCCACCGCTCCAAATAGCGATAGCGGCGCCAAATCGTTCCTGTCCGGCATGGCCGGCAAAGCAGGC
GACGTGGTGGTCGGCGCGCTGAACATGATCGGCGTGCGCTACCGCTGGGGCGGCAATACACCGGATTCCGGGCTCGATTG
CAGCGGCTTCGTGCGCTATGTGTTCCAGGACACGCTCGGTATGGCGCTGCCGCGCCGCGCCGAGGAAATGAGCCGCGTCG
GTGAGAAGGTTCGCGTGAGCGACCTGAAGCCGGGCGATCTGGTGTTCTTCAACACCATGCGCCGCACGTTCTCGCACGTC
GGCATCTACATCGGCGACAACAAGTTCGTGCATTCGCCTTCCACGGGCAGCACGATCCGTGTCGACGACATGGATAGCGG
TTACTGGGAAAAACGTTTCACCGGCGCGCGCCGGATCGAGACGTCCTATCAGGACGGCCAGGATCTGCGCAAACGCGTGA
ACGCGGCGCTCGGCGACACTCAGTAA

Upstream 100 bases:

>100_bases
TTGAATTTTTCTATTTGTTTTGACACGTGAATACTTACTGGCTAGTATCGACCAAACTTTTTCCGTAGCCCCCTGATTTT
TAGGCAAAAAATACCGACCA

Downstream 100 bases:

>100_bases
CGGATTGCGCGGGCCGGTTTGTTACCCGGCTTGTGACCCGTTGCGCGGCGGTTCAGGCGTAAAAAAGCCTGCTTCGAAAG
AAGCAGGCTTTTTGCATTTG

Product: NLP/P60 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MQHRNLTQACTRVVAGMFIGVLMAATPGAFADEVSSFNQNASYSTLGGSNSSPTPNSQATAPNSDSGAKSFLSGMAGKAG
DVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDTLGMALPRRAEEMSRVGEKVRVSDLKPGDLVFFNTMRRTFSHV
GIYIGDNKFVHSPSTGSTIRVDDMDSGYWEKRFTGARRIETSYQDGQDLRKRVNAALGDTQ

Sequences:

>Translated_221_residues
MQHRNLTQACTRVVAGMFIGVLMAATPGAFADEVSSFNQNASYSTLGGSNSSPTPNSQATAPNSDSGAKSFLSGMAGKAG
DVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDTLGMALPRRAEEMSRVGEKVRVSDLKPGDLVFFNTMRRTFSHV
GIYIGDNKFVHSPSTGSTIRVDDMDSGYWEKRFTGARRIETSYQDGQDLRKRVNAALGDTQ
>Mature_221_residues
MQHRNLTQACTRVVAGMFIGVLMAATPGAFADEVSSFNQNASYSTLGGSNSSPTPNSQATAPNSDSGAKSFLSGMAGKAG
DVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDTLGMALPRRAEEMSRVGEKVRVSDLKPGDLVFFNTMRRTFSHV
GIYIGDNKFVHSPSTGSTIRVDDMDSGYWEKRFTGARRIETSYQDGQDLRKRVNAALGDTQ

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=128, Percent_Identity=44.53125, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1786421, Length=149, Percent_Identity=39.5973154362416, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788501, Length=109, Percent_Identity=48.6238532110092, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=40.9090909090909, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 23857; Mature: 23857

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHRNLTQACTRVVAGMFIGVLMAATPGAFADEVSSFNQNASYSTLGGSNSSPTPNSQAT
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
APNSDSGAKSFLSGMAGKAGDVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDTLG
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
MALPRRAEEMSRVGEKVRVSDLKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGSTIR
HHCCHHHHHHHHHCCCEEECCCCCCCEEHHHHHHHHHHHCCEEECCCEEEECCCCCCEEE
VDDMDSGYWEKRFTGARRIETSYQDGQDLRKRVNAALGDTQ
EECCCCCHHHHHHCCHHHHHCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQHRNLTQACTRVVAGMFIGVLMAATPGAFADEVSSFNQNASYSTLGGSNSSPTPNSQAT
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
APNSDSGAKSFLSGMAGKAGDVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDTLG
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
MALPRRAEEMSRVGEKVRVSDLKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGSTIR
HHCCHHHHHHHHHCCCEEECCCCCCCEEHHHHHHHHHHHCCEEECCCEEEECCCCCCEEE
VDDMDSGYWEKRFTGARRIETSYQDGQDLRKRVNAALGDTQ
EECCCCCHHHHHHCCHHHHHCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]