BacMap

Definition	Burkholderia xenovorans LB400 chromosome 1, complete sequence.
Accession	NC_007951
Length	4,895,836

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The map label for this gene is dltE [H]

Identifier: 91784070

GI number: 91784070

Start: 2994359

End: 2995132

Strand: Reverse

Name: dltE [H]

Synonym: Bxe_A1732

Alternate gene names: 91784070

Gene position: 2995132-2994359 (Counterclockwise)

Preceding gene: 91784072

Following gene: 91784069

Centisome position: 61.18

GC content: 55.94

Gene sequence:

>774_bases
GTGAAACTGATTGGAAGGACCGTTTTGATTACGGGAGGAAGCAGTGGAATAGGCCTCGAGCTGGCGAAGCAACTGATCGC
GCGGGGTAACAGCGTGATAGTCACCGGGCGCAATCGCGCCAGGCTGGAAGCCGCACGGCAAGCCGTACTAGGCCTCCACG
CTTTTCAAAGCGACGTTAGCGATCCGGCGAGCATCGAGTTGCTTTATCAAAAGGTGTCAGCCAGTTTTCCTCTGTTAGAC
ACCCTTGTGAACAACGCGGGCGCGATGCGCAATATCAAGCTTGATCAGCAGTATCAATTGAACGATCTGACAGCCGAGAT
CAACGGGAATCTGAACGGCACCATTTGGATGGTCCAAACGTTTCTCCCCCTACTCTTGCGTCAGAAGGGCAGCTTGATTG
TGAATGTGTCGTCTGGCCTCGCGTTTGTTCCTTTTCCGGCGGCTCCGATCTACAGCGCGTCCAAAGCTGCGATCCACGCA
TATACACGGTGTCTGAGGGCGCAACTGGAAGGCTCCTTCGTGTCAATCGTCGAATTGGCCCCTCCCGGCACCGAGACACC
GCTGTTCAGGGGCGAGTTCGCCGAGGAAATGAAAGGGGAGAAAGGCATGGACGTCAGTGTGCTCGTTAAACACACCATCG
ACGGTATCGAAGCCGGGAAACAGGAAGTTCGTCCGGGCCTGAGCAATGTGCTGAAAATCGCCAGCCGCGTTGCGCCGCAA
TTCATGTTTCGGCAGATGGTGAAGCTCGGTCGTCCGCGATCGTCCAGTGTCTGA

Upstream 100 bases:

>100_bases
ACTCTCCATTTGGTAAGTATCTGACTTTCAGGTGCCTTCTTCCTCTTTGACAGTATGCACGTCAAACTACGTCAATGCTC
AATTCAACTGGAGATGACGG

Downstream 100 bases:

>100_bases
AGATAGCGAACTTAGTAAGCGACAGCACTGCCATGACATTGGAAACATCGATTGCAAACGGGCGGGTGACGTCGTCCGAC
GGTACGTCAATCGGATACGA

Product: putative short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKLIGRTVLITGGSSGIGLELAKQLIARGNSVIVTGRNRARLEAARQAVLGLHAFQSDVSDPASIELLYQKVSASFPLLD
TLVNNAGAMRNIKLDQQYQLNDLTAEINGNLNGTIWMVQTFLPLLLRQKGSLIVNVSSGLAFVPFPAAPIYSASKAAIHA
YTRCLRAQLEGSFVSIVELAPPGTETPLFRGEFAEEMKGEKGMDVSVLVKHTIDGIEAGKQEVRPGLSNVLKIASRVAPQ
FMFRQMVKLGRPRSSSV

Sequences:

>Translated_257_residues
MKLIGRTVLITGGSSGIGLELAKQLIARGNSVIVTGRNRARLEAARQAVLGLHAFQSDVSDPASIELLYQKVSASFPLLD
TLVNNAGAMRNIKLDQQYQLNDLTAEINGNLNGTIWMVQTFLPLLLRQKGSLIVNVSSGLAFVPFPAAPIYSASKAAIHA
YTRCLRAQLEGSFVSIVELAPPGTETPLFRGEFAEEMKGEKGMDVSVLVKHTIDGIEAGKQEVRPGLSNVLKIASRVAPQ
FMFRQMVKLGRPRSSSV
>Mature_257_residues
MKLIGRTVLITGGSSGIGLELAKQLIARGNSVIVTGRNRARLEAARQAVLGLHAFQSDVSDPASIELLYQKVSASFPLLD
TLVNNAGAMRNIKLDQQYQLNDLTAEINGNLNGTIWMVQTFLPLLLRQKGSLIVNVSSGLAFVPFPAAPIYSASKAAIHA
YTRCLRAQLEGSFVSIVELAPPGTETPLFRGEFAEEMKGEKGMDVSVLVKHTIDGIEAGKQEVRPGLSNVLKIASRVAPQ
FMFRQMVKLGRPRSSSV

Specific function: Unknown

COG id: COG3967

COG function: function code M; Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=194, Percent_Identity=30.4123711340206, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI31542939, Length=211, Percent_Identity=30.3317535545024, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI4557649, Length=197, Percent_Identity=30.4568527918782, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7706318, Length=192, Percent_Identity=30.7291666666667, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI226371731, Length=186, Percent_Identity=27.9569892473118, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=31.4285714285714, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4504503, Length=186, Percent_Identity=31.7204301075269, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI40254992, Length=194, Percent_Identity=25.2577319587629, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI7657478, Length=200, Percent_Identity=36.5, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI7705855, Length=192, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787820, Length=199, Percent_Identity=29.1457286432161, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787335, Length=199, Percent_Identity=30.1507537688442, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1786812, Length=190, Percent_Identity=30.5263157894737, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87082100, Length=193, Percent_Identity=29.5336787564767, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=29.8429319371728, Blast_Score=64, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=214, Percent_Identity=34.5794392523364, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17562990, Length=188, Percent_Identity=34.0425531914894, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=196, Percent_Identity=34.1836734693878, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI72000259, Length=204, Percent_Identity=34.8039215686275, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=192, Percent_Identity=32.8125, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=217, Percent_Identity=32.258064516129, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=198, Percent_Identity=33.8383838383838, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI115534694, Length=205, Percent_Identity=32.1951219512195, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=169, Percent_Identity=34.3195266272189, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=175, Percent_Identity=33.7142857142857, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=198, Percent_Identity=31.3131313131313, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=197, Percent_Identity=32.994923857868, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=196, Percent_Identity=33.1632653061224, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=189, Percent_Identity=34.3915343915344, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=195, Percent_Identity=27.6923076923077, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=197, Percent_Identity=31.9796954314721, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=173, Percent_Identity=34.1040462427746, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=197, Percent_Identity=26.3959390862944, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=176, Percent_Identity=32.9545454545455, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=201, Percent_Identity=33.8308457711443, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17557780, Length=208, Percent_Identity=27.8846153846154, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6322227, Length=223, Percent_Identity=29.1479820627803, Blast_Score=69, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6322067, Length=193, Percent_Identity=32.1243523316062, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI23397609, Length=206, Percent_Identity=34.9514563106796, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI221331218, Length=209, Percent_Identity=30.622009569378, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24665243, Length=209, Percent_Identity=30.622009569378, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI221331216, Length=207, Percent_Identity=29.4685990338164, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24665247, Length=207, Percent_Identity=29.4685990338164, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24651139, Length=189, Percent_Identity=31.2169312169312, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI21355631, Length=178, Percent_Identity=29.7752808988764, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI28571526, Length=211, Percent_Identity=27.0142180094787, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI21355319, Length=208, Percent_Identity=26.4423076923077, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24644339, Length=202, Percent_Identity=29.7029702970297, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21357041, Length=216, Percent_Identity=30.0925925925926, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24643142, Length=176, Percent_Identity=35.2272727272727, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641388, Length=205, Percent_Identity=26.8292682926829, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24648693, Length=211, Percent_Identity=26.0663507109005, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21355889, Length=211, Percent_Identity=26.0663507109005, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281364892, Length=195, Percent_Identity=28.2051282051282, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281364494, Length=198, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007236, Length=195, Percent_Identity=28.7179487179487, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=27.5510204081633, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21356301, Length=199, Percent_Identity=29.1457286432161, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28571387, Length=206, Percent_Identity=30.0970873786408, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27743; Mature: 27743

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLIGRTVLITGGSSGIGLELAKQLIARGNSVIVTGRNRARLEAARQAVLGLHAFQSDVS
CCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCC
DPASIELLYQKVSASFPLLDTLVNNAGAMRNIKLDQQYQLNDLTAEINGNLNGTIWMVQT
CCHHHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCCEEEEECCCCCEEEEHHHH
FLPLLLRQKGSLIVNVSSGLAFVPFPAAPIYSASKAAIHAYTRCLRAQLEGSFVSIVELA
HHHHHHHCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
PPGTETPLFRGEFAEEMKGEKGMDVSVLVKHTIDGIEAGKQEVRPGLSNVLKIASRVAPQ
CCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHH
FMFRQMVKLGRPRSSSV
HHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKLIGRTVLITGGSSGIGLELAKQLIARGNSVIVTGRNRARLEAARQAVLGLHAFQSDVS
CCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCC
DPASIELLYQKVSASFPLLDTLVNNAGAMRNIKLDQQYQLNDLTAEINGNLNGTIWMVQT
CCHHHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCCEEEEECCCCCEEEEHHHH
FLPLLLRQKGSLIVNVSSGLAFVPFPAAPIYSASKAAIHAYTRCLRAQLEGSFVSIVELA
HHHHHHHCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
PPGTETPLFRGEFAEEMKGEKGMDVSVLVKHTIDGIEAGKQEVRPGLSNVLKIASRVAPQ
CCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHH
FMFRQMVKLGRPRSSSV
HHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377; 7797557 [H]