| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91784035
Identifier: 91784035
GI number: 91784035
Start: 2957621
End: 2958634
Strand: Reverse
Name: 91784035
Synonym: Bxe_A1768
Alternate gene names: NA
Gene position: 2958634-2957621 (Counterclockwise)
Preceding gene: 91784036
Following gene: 91784033
Centisome position: 60.43
GC content: 66.67
Gene sequence:
>1014_bases ATGCCCTATCCAAAAATCTACATCGACGCGATGCTCGTGAACTGGGGCGACCGGCTGTTTCAGGAGCCGCTGCGGCACGC TCGAGCTGCGCGGCTCTCGCATGTTGATATCCGGGACGAAGCCGCCCGCATGCGAGCCAAGATCGCACGCACGCTCCGGC GCACGCCCGAGGTAATGGTCAAGATCACGAACAAGGCCGCGAGCGCCCAGGGCATGGGGGCCGTGCGCCGACACCTGCGC TACATCTCGCGCAACGGCCAGGTCGAACTGGAAGACCAGAACGGCGATCGAATCGCGGGCGTCGAGGCATTGCGTGATCT GACGCGGGCCTGGCAGCTCGGCGGATGGGGCATCCCGGAGAGCAGCACACGTCGCGAGGTATTCAATGTCCTGCTGTCGA TGCCGCCGGGCACGGACAGGCGGGCCGTGCGCGATGCGGCACGCGACTTTGCGGCACAGGAGTTCGGCGATGGCCGAGCG TATGCATTTGCGGCGCACGACGATGAAGCCCATCCGCATGTGCATCTGAGCGTACAGGTTCGTGGCCCAGATGGGCGGCG CCTGAATCCGCGGCGCAAGGATCTGCAGCGGTGGCGTGAGCACTTTGCAGAGCAACTGCGCGAGCACGGCGCCGACGCCA ATGCGACGCCCCGGCGTGTGCGTGGCGTGACGCAGCGTTATCCGAAACCCGCTGTCGTTCACATGATCGCGCGCGGCGAG ACGCCGGGATACTGGAAGCCGCTGCCGGCCGATACGCAGCGTGACGCAGGCTGGGTCGCGCACGGCGGGGTGTTCGCTGC CTGGCGGGAATTGGCTTATGCGATGGCGAGATCGCGTGCGCGCGAGGATCGCTCGATGGCCGTCGAGATGGCATATTTCG TCGGCGGCATGCCGGTGCAGCGGGACCGGCCCGTGGTGGAGCGAGTGCAGGACGCACGGTCCGAGCGGTCCGATTCGCAG GTTCCAGACGCCAGAGATTGGCCAGACGATGTCGGACCGGGCGTGGATCGGTGA
Upstream 100 bases:
>100_bases CGGATGCCGGACTGGGCGGATATGCGGGACCGGATCGACGCCCATCTGCGTGCCACATCGAGCGTCATTCGCGCAAACCT TGACCGATGGAGCCGCTGAT
Downstream 100 bases:
>100_bases CGGCAAGAGTGCAGCGTGGCTATACCTATCGTGCCGTGGATCGGTGAGTCTGGTTTTTGCAACTATTTACTGAGTGTTCG CTTTAACCCATCCAGGCTTG
Product: putative DNA relaxase/nickase, TraS/VirD2-like
Products: NA
Alternate protein names: DNA Relaxase/Nickase TraS/VirD2-Like Protein; Type IV Secretory Pathway VirD2 Component; Nickase; DNA Relaxase/Nickase TraS/VirD2-Like; Plasmid-Related Protein; Type IV Secretory Pathway VirD2 Components; VirD2-Like Protein; Relaxase/Mobilisation Nuclease; Nickase/Relaxase; DNA Relaxase/Nickase TraS/VirD2- Like
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MPYPKIYIDAMLVNWGDRLFQEPLRHARAARLSHVDIRDEAARMRAKIARTLRRTPEVMVKITNKAASAQGMGAVRRHLR YISRNGQVELEDQNGDRIAGVEALRDLTRAWQLGGWGIPESSTRREVFNVLLSMPPGTDRRAVRDAARDFAAQEFGDGRA YAFAAHDDEAHPHVHLSVQVRGPDGRRLNPRRKDLQRWREHFAEQLREHGADANATPRRVRGVTQRYPKPAVVHMIARGE TPGYWKPLPADTQRDAGWVAHGGVFAAWRELAYAMARSRAREDRSMAVEMAYFVGGMPVQRDRPVVERVQDARSERSDSQ VPDARDWPDDVGPGVDR
Sequences:
>Translated_337_residues MPYPKIYIDAMLVNWGDRLFQEPLRHARAARLSHVDIRDEAARMRAKIARTLRRTPEVMVKITNKAASAQGMGAVRRHLR YISRNGQVELEDQNGDRIAGVEALRDLTRAWQLGGWGIPESSTRREVFNVLLSMPPGTDRRAVRDAARDFAAQEFGDGRA YAFAAHDDEAHPHVHLSVQVRGPDGRRLNPRRKDLQRWREHFAEQLREHGADANATPRRVRGVTQRYPKPAVVHMIARGE TPGYWKPLPADTQRDAGWVAHGGVFAAWRELAYAMARSRAREDRSMAVEMAYFVGGMPVQRDRPVVERVQDARSERSDSQ VPDARDWPDDVGPGVDR >Mature_336_residues PYPKIYIDAMLVNWGDRLFQEPLRHARAARLSHVDIRDEAARMRAKIARTLRRTPEVMVKITNKAASAQGMGAVRRHLRY ISRNGQVELEDQNGDRIAGVEALRDLTRAWQLGGWGIPESSTRREVFNVLLSMPPGTDRRAVRDAARDFAAQEFGDGRAY AFAAHDDEAHPHVHLSVQVRGPDGRRLNPRRKDLQRWREHFAEQLREHGADANATPRRVRGVTQRYPKPAVVHMIARGET PGYWKPLPADTQRDAGWVAHGGVFAAWRELAYAMARSRAREDRSMAVEMAYFVGGMPVQRDRPVVERVQDARSERSDSQV PDARDWPDDVGPGVDR
Specific function: Unknown
COG id: COG3843
COG function: function code U; Type IV secretory pathway, VirD2 components (relaxase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38283; Mature: 38151
Theoretical pI: Translated: 10.67; Mature: 10.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYPKIYIDAMLVNWGDRLFQEPLRHARAARLSHVDIRDEAARMRAKIARTLRRTPEVMV CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHEE KITNKAASAQGMGAVRRHLRYISRNGQVELEDQNGDRIAGVEALRDLTRAWQLGGWGIPE EEHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC SSTRREVFNVLLSMPPGTDRRAVRDAARDFAAQEFGDGRAYAFAAHDDEAHPHVHLSVQV CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEE RGPDGRRLNPRRKDLQRWREHFAEQLREHGADANATPRRVRGVTQRYPKPAVVHMIARGE ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCC TPGYWKPLPADTQRDAGWVAHGGVFAAWRELAYAMARSRAREDRSMAVEMAYFVGGMPVQ CCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC RDRPVVERVQDARSERSDSQVPDARDWPDDVGPGVDR CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCC >Mature Secondary Structure PYPKIYIDAMLVNWGDRLFQEPLRHARAARLSHVDIRDEAARMRAKIARTLRRTPEVMV CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHEE KITNKAASAQGMGAVRRHLRYISRNGQVELEDQNGDRIAGVEALRDLTRAWQLGGWGIPE EEHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC SSTRREVFNVLLSMPPGTDRRAVRDAARDFAAQEFGDGRAYAFAAHDDEAHPHVHLSVQV CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEE RGPDGRRLNPRRKDLQRWREHFAEQLREHGADANATPRRVRGVTQRYPKPAVVHMIARGE ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCC TPGYWKPLPADTQRDAGWVAHGGVFAAWRELAYAMARSRAREDRSMAVEMAYFVGGMPVQ CCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC RDRPVVERVQDARSERSDSQVPDARDWPDDVGPGVDR CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA