| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is yusP [H]
Identifier: 91783978
GI number: 91783978
Start: 2890784
End: 2892400
Strand: Reverse
Name: yusP [H]
Synonym: Bxe_A1830
Alternate gene names: 91783978
Gene position: 2892400-2890784 (Counterclockwise)
Preceding gene: 91783979
Following gene: 91783977
Centisome position: 59.08
GC content: 64.5
Gene sequence:
>1617_bases ATGAGCATTGCGCCGGGCAGCGTCCGCGAGGAAGAGAGCTCCGCCGGTCAGGGCATCAGGTCGTTCCGGCAGTCACTGCT TGCGATGCTGGGGCTATCGAGCGTGGTCATGATGGTCGCGATCGACCAGACGGTGGTCGGTACGGCTTTGCCGTCTATCG TCGCGGATCTGCATCGCTTCGATCTCTACGAGTGGGTCGCCACCTCCTACCTGCTGACGTCGGTGATTACCGTGCCGATT TTCGGCCGGCTCGGAGACTGGCTGGGAAGAAAACCCCTGATCGTCATTGCGATCGTGCTCTTCACTGTTGCATCGGCGTT GTGCGGTTTTGCGCAGACCATGCCCATGCTGATCGCCTGCCGCGCATTGCAGGGGATAGGCGGCGGCATGCTGGTCGGAA CCTGCTTTGCCTCCATACCGGACCTCTTTCCGGATCCGGTGGTGCGGCTGCGCTGGCAGGTCCTGTTCTCGAGCGCCTTT GGTCTGGCCAATGCCGTCGGGCCGTCGCTCGGCGGCTTTCTGAGCCAGCATTACGGGTGGCGCTCCGCCTTTCTCGTCAA CATACCGGTGGGCGTTGTAAGCCTTTATCTCGCAGCGAAGCATCTGCCGCATATCCGGCATGCCAGGTTCGAGCGGTTGA ACGCGGACTGGAAAGGAGCATGTCTGATTACCGTTGCGCTGGGCTCGCTTCAGCTCCTCGTCGAGGCGGCAGGTAGTACG GGTTCCCATGCCGGCCTCTACGCGGCGGTGGCCGTGCTTTCGATGGGATTGCTGGTGCGGCAGGAGCGGCGCGCGCCCAA TCCCGTCATTCCGCCCGGCTTGCTCAAGGATCGCGCGACCCTCGTGCTGCTCGTGCTGTCGCTGCTGATGGGCGTCGCGA TGTTCGTGCTGCTCTTTTATGTGCCGCTGCTGTTGCAGGGCGGTCTGGGGCTCGACGCCGGCAAGGCTGGAATCGTCGTG ACACCGATGGTCGTGTGCATCACGGTCGGCACCATTACCAACACGCGCATCGTGACTCGCCTGGAGAAGCCGAACCTCCT GCTGTATCTCGGGTTTGGTCTTCTCGGCGTGTCCTGCGCGGCGATTGCTTCTGTCGGCGCCGGCGGTGCGAGCGTGGGGT TCGTCGTCGCGATGGTGATGGCCGGCGTCGGTATCGGGTTTGTGATGCCGAACCTGACCGTGTTCGTGCAGCAGGTCGCC GGAAAAACGCGCCTCGGCATTGCCACGGCGCTGATCCAGTCGGCACGGATGGTGGGCGGCATGCTGGGTACGGCGATGGC GGGGACGATGGCGCGCCACCTGTATCGAGCAGGGCTCGAACCGGTGTTGACGGCGAAGGCAGCCGCAGCGCCCGGACATT GGACCCTTGCGTTGCAGGACCCGCAAACGCTCATGTCGGCGCAGGCGGCAGCGGACTTCGCCGGGCACGCCAATCACGCC GGCTTCGATGGCGAGGCAATGCTGGGGGCGGCGCGCGCGGTGCTCGTCCACGCGCTGCAAACGTCGCTCTTCGGGGTCGC GCTGCTGATGGCCGCGGCGTGCGTGATTGTGCGGCTACTGCCGTTGATTCCGATTACCTCGATAGCGGCATCGAGGCAGC AGGGCGCACCGGAATAA
Upstream 100 bases:
>100_bases TAGGCATCGGGTTACAGGATATTGTTCTGGCGGGGATTGCATGGGAGAAGCACGTGAGTCGCAACATGATCAGATTGCGG GGAGAGTTGCAGGGGCTGCA
Downstream 100 bases:
>100_bases TGACTACGCCGACGGCCCGAAAGAGTGCGAGTGCACCGCGTCATTTCTGGCAATCAATGTACGCGGCTTCTCTGGCGACA TGGATCGAAGCCGTCGCACA
Product: major facilitator superfamily drug efflux transporter
Products: Proton [Cytoplasm]; drug [Periplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 538; Mature: 537
Protein sequence:
>538_residues MSIAPGSVREEESSAGQGIRSFRQSLLAMLGLSSVVMMVAIDQTVVGTALPSIVADLHRFDLYEWVATSYLLTSVITVPI FGRLGDWLGRKPLIVIAIVLFTVASALCGFAQTMPMLIACRALQGIGGGMLVGTCFASIPDLFPDPVVRLRWQVLFSSAF GLANAVGPSLGGFLSQHYGWRSAFLVNIPVGVVSLYLAAKHLPHIRHARFERLNADWKGACLITVALGSLQLLVEAAGST GSHAGLYAAVAVLSMGLLVRQERRAPNPVIPPGLLKDRATLVLLVLSLLMGVAMFVLLFYVPLLLQGGLGLDAGKAGIVV TPMVVCITVGTITNTRIVTRLEKPNLLLYLGFGLLGVSCAAIASVGAGGASVGFVVAMVMAGVGIGFVMPNLTVFVQQVA GKTRLGIATALIQSARMVGGMLGTAMAGTMARHLYRAGLEPVLTAKAAAAPGHWTLALQDPQTLMSAQAAADFAGHANHA GFDGEAMLGAARAVLVHALQTSLFGVALLMAAACVIVRLLPLIPITSIAASRQQGAPE
Sequences:
>Translated_538_residues MSIAPGSVREEESSAGQGIRSFRQSLLAMLGLSSVVMMVAIDQTVVGTALPSIVADLHRFDLYEWVATSYLLTSVITVPI FGRLGDWLGRKPLIVIAIVLFTVASALCGFAQTMPMLIACRALQGIGGGMLVGTCFASIPDLFPDPVVRLRWQVLFSSAF GLANAVGPSLGGFLSQHYGWRSAFLVNIPVGVVSLYLAAKHLPHIRHARFERLNADWKGACLITVALGSLQLLVEAAGST GSHAGLYAAVAVLSMGLLVRQERRAPNPVIPPGLLKDRATLVLLVLSLLMGVAMFVLLFYVPLLLQGGLGLDAGKAGIVV TPMVVCITVGTITNTRIVTRLEKPNLLLYLGFGLLGVSCAAIASVGAGGASVGFVVAMVMAGVGIGFVMPNLTVFVQQVA GKTRLGIATALIQSARMVGGMLGTAMAGTMARHLYRAGLEPVLTAKAAAAPGHWTLALQDPQTLMSAQAAADFAGHANHA GFDGEAMLGAARAVLVHALQTSLFGVALLMAAACVIVRLLPLIPITSIAASRQQGAPE >Mature_537_residues SIAPGSVREEESSAGQGIRSFRQSLLAMLGLSSVVMMVAIDQTVVGTALPSIVADLHRFDLYEWVATSYLLTSVITVPIF GRLGDWLGRKPLIVIAIVLFTVASALCGFAQTMPMLIACRALQGIGGGMLVGTCFASIPDLFPDPVVRLRWQVLFSSAFG LANAVGPSLGGFLSQHYGWRSAFLVNIPVGVVSLYLAAKHLPHIRHARFERLNADWKGACLITVALGSLQLLVEAAGSTG SHAGLYAAVAVLSMGLLVRQERRAPNPVIPPGLLKDRATLVLLVLSLLMGVAMFVLLFYVPLLLQGGLGLDAGKAGIVVT PMVVCITVGTITNTRIVTRLEKPNLLLYLGFGLLGVSCAAIASVGAGGASVGFVVAMVMAGVGIGFVMPNLTVFVQQVAG KTRLGIATALIQSARMVGGMLGTAMAGTMARHLYRAGLEPVLTAKAAAAPGHWTLALQDPQTLMSAQAAADFAGHANHAG FDGEAMLGAARAVLVHALQTSLFGVALLMAAACVIVRLLPLIPITSIAASRQQGAPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. EmrB family [H]
Homologues:
Organism=Escherichia coli, GI1790195, Length=313, Percent_Identity=31.629392971246, Blast_Score=125, Evalue=6e-30, Organism=Escherichia coli, GI87081983, Length=414, Percent_Identity=26.0869565217391, Blast_Score=108, Evalue=6e-25, Organism=Escherichia coli, GI1789042, Length=427, Percent_Identity=27.1662763466042, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1788710, Length=302, Percent_Identity=27.1523178807947, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1788392, Length=384, Percent_Identity=29.4270833333333, Blast_Score=86, Evalue=7e-18, Organism=Escherichia coli, GI1790146, Length=171, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6319770, Length=384, Percent_Identity=26.8229166666667, Blast_Score=102, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6323735, Length=324, Percent_Identity=25.9259259259259, Blast_Score=81, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6322958, Length=473, Percent_Identity=23.8900634249471, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6325455, Length=162, Percent_Identity=27.1604938271605, Blast_Score=73, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6321663, Length=150, Percent_Identity=30.6666666666667, Blast_Score=72, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004638 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 55982; Mature: 55851
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIAPGSVREEESSAGQGIRSFRQSLLAMLGLSSVVMMVAIDQTVVGTALPSIVADLHRF CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLYEWVATSYLLTSVITVPIFGRLGDWLGRKPLIVIAIVLFTVASALCGFAQTMPMLIAC HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RALQGIGGGMLVGTCFASIPDLFPDPVVRLRWQVLFSSAFGLANAVGPSLGGFLSQHYGW HHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC RSAFLVNIPVGVVSLYLAAKHLPHIRHARFERLNADWKGACLITVALGSLQLLVEAAGST HHEEEEECCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCC GSHAGLYAAVAVLSMGLLVRQERRAPNPVIPPGLLKDRATLVLLVLSLLMGVAMFVLLFY CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VPLLLQGGLGLDAGKAGIVVTPMVVCITVGTITNTRIVTRLEKPNLLLYLGFGLLGVSCA HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHEEEECCCCEEEEECHHHHHHHHH AIASVGAGGASVGFVVAMVMAGVGIGFVMPNLTVFVQQVAGKTRLGIATALIQSARMVGG HHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH MLGTAMAGTMARHLYRAGLEPVLTAKAAAAPGHWTLALQDPQTLMSAQAAADFAGHANHA HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCC GFDGEAMLGAARAVLVHALQTSLFGVALLMAAACVIVRLLPLIPITSIAASRQQGAPE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SIAPGSVREEESSAGQGIRSFRQSLLAMLGLSSVVMMVAIDQTVVGTALPSIVADLHRF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLYEWVATSYLLTSVITVPIFGRLGDWLGRKPLIVIAIVLFTVASALCGFAQTMPMLIAC HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RALQGIGGGMLVGTCFASIPDLFPDPVVRLRWQVLFSSAFGLANAVGPSLGGFLSQHYGW HHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC RSAFLVNIPVGVVSLYLAAKHLPHIRHARFERLNADWKGACLITVALGSLQLLVEAAGST HHEEEEECCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCC GSHAGLYAAVAVLSMGLLVRQERRAPNPVIPPGLLKDRATLVLLVLSLLMGVAMFVLLFY CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VPLLLQGGLGLDAGKAGIVVTPMVVCITVGTITNTRIVTRLEKPNLLLYLGFGLLGVSCA HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHEEEECCCCEEEEECHHHHHHHHH AIASVGAGGASVGFVVAMVMAGVGIGFVMPNLTVFVQQVAGKTRLGIATALIQSARMVGG HHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH MLGTAMAGTMARHLYRAGLEPVLTAKAAAAPGHWTLALQDPQTLMSAQAAADFAGHANHA HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCC GFDGEAMLGAARAVLVHALQTSLFGVALLMAAACVIVRLLPLIPITSIAASRQQGAPE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; drug [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + drug [Cytoplasm] = Proton [Cytoplasm] + drug [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]