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The map label for this gene is cydB [H]

Identifier: 91783904

GI number: 91783904

Start: 2820383

End: 2821519

Strand: Direct

Name: cydB [H]

Synonym: Bxe_A1907

Alternate gene names: 91783904

Gene position: 2820383-2821519 (Clockwise)

Preceding gene: 91783903

Following gene: 91783905

Centisome position: 57.61

GC content: 65.52

Gene sequence:

>1137_bases
ATGGATTATGCAACCCTCAAACTGATCTGGTGGGTACTGATCGGCGTACTGCTGATCGGCTTCGCACTCACCGACGGCTT
CGACATGGGCGCGGCGATCCTGCTGCCGTTCATCGGCAAGACGGACGCCGAACGGCGCATCGTCGTCAATACCGTGGGCG
CGACCTGGGAAGGCAATCAGGTCTGGCTCATCACCGCGGGCGGCGCGATGTTTGCCGCGTGGCCGCTGGTGTACGCGGCG
TCGTTCTCCGGCTTCTATTTCGCCATGCTGCTGGTGCTGTTCTCGCTGTTCTTCCGGCCGGTCGGCTTCGACTACCGCAG
CAAGCGTGAAGATCCGCGCTGGCGCAGCGCGTGGGACTGGGCCCTGTTCGTCGGCGGCTTCGTGCCGTCTCTCGTGTTCG
GCGTCGCGTTCGGCAACCTGCTGCAAGGCGTGCCGTTCTCGTTCGATACCGATCTGCGCGTGACCTATCACGGCGGCTTC
TTCGCGCTGCTCAACCCGTTCGCGGTGCTGTGCGGGCTCGTCAGCGTGTCGATGCTGGCCGCGCATGGCGCCGCCTTCGT
GAAGATGAAAGCGGACGACATCGTGGCCGAGCGCGCGTCGCTCGCGCTGCGGATCGCTTCGTTCGCGGCCGTGGTGCTGT
TCCTGATTGCCGGCGCGCTGATCGCCACGATGATCGGCGGCTATCAGCTGGTCGACGCCGCGCCGCTCGACACGGTGGCC
AATCCGCTGCTCAAGAGCGTGACCGGCGCGCCCGGTTTGTGGCTGGCCAACTACGCGACCTATCCGTGGATGGTGGCCGC
GCCGGTGGCCGGTCTGGCGGGCGGTGTGCTGGCCACGCTGCTCGCGCGCTCGCGCTTCGAGAAGAGCGCCTTTCTGGCGA
CCTCGCTGATGATCGTCGGCGTGATCCTCACGGCGGGCTTCTCGATGTTCCCGTTCATCATGCCCTCCTCGCTCGACGGC
CGCAGCAGCCTCACCGTGTGGGATTCCACCTCGAGCCGCATGACGCTGCAGATCATGCTGATCGCCGTGATCGTGTTCCT
GCCGCTCATCCTGATCTATACGAGCTGGGTGTATCGCGTGATGCGCGGCAAGGTGACCGCGGCGGCGCTCGAAGAGAACC
GGCACACGATGTACTGA

Upstream 100 bases:

>100_bases
ACGAACAACCGTCACCGGATCAGCCGCTGGACAACCGGCCGCTGCCGACCAGCACGGTCGCCTGATTCGCCGCCACCGAG
ATTCAAGGGAAAAGATCATC

Downstream 100 bases:

>100_bases
GCGGCATTCCGCACATTTTCGCAAATCACTGGAACTGCTTACCGGGAGCACACAATGTGGTATTTCAGCTGGATTCTTGG
TATTGGCGTAGCGCTTGCGT

Product: cytochrome bd ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDYATLKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIGKTDAERRIVVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFSLFFRPVGFDYRSKREDPRWRSAWDWALFVGGFVPSLVFGVAFGNLLQGVPFSFDTDLRVTYHGGF
FALLNPFAVLCGLVSVSMLAAHGAAFVKMKADDIVAERASLALRIASFAAVVLFLIAGALIATMIGGYQLVDAAPLDTVA
NPLLKSVTGAPGLWLANYATYPWMVAAPVAGLAGGVLATLLARSRFEKSAFLATSLMIVGVILTAGFSMFPFIMPSSLDG
RSSLTVWDSTSSRMTLQIMLIAVIVFLPLILIYTSWVYRVMRGKVTAAALEENRHTMY

Sequences:

>Translated_378_residues
MDYATLKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIGKTDAERRIVVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFSLFFRPVGFDYRSKREDPRWRSAWDWALFVGGFVPSLVFGVAFGNLLQGVPFSFDTDLRVTYHGGF
FALLNPFAVLCGLVSVSMLAAHGAAFVKMKADDIVAERASLALRIASFAAVVLFLIAGALIATMIGGYQLVDAAPLDTVA
NPLLKSVTGAPGLWLANYATYPWMVAAPVAGLAGGVLATLLARSRFEKSAFLATSLMIVGVILTAGFSMFPFIMPSSLDG
RSSLTVWDSTSSRMTLQIMLIAVIVFLPLILIYTSWVYRVMRGKVTAAALEENRHTMY
>Mature_378_residues
MDYATLKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIGKTDAERRIVVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFSLFFRPVGFDYRSKREDPRWRSAWDWALFVGGFVPSLVFGVAFGNLLQGVPFSFDTDLRVTYHGGF
FALLNPFAVLCGLVSVSMLAAHGAAFVKMKADDIVAERASLALRIASFAAVVLFLIAGALIATMIGGYQLVDAAPLDTVA
NPLLKSVTGAPGLWLANYATYPWMVAAPVAGLAGGVLATLLARSRFEKSAFLATSLMIVGVILTAGFSMFPFIMPSSLDG
RSSLTVWDSTSSRMTLQIMLIAVIVFLPLILIYTSWVYRVMRGKVTAAALEENRHTMY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=378, Percent_Identity=51.3227513227513, Blast_Score=397, Evalue=1e-112,
Organism=Escherichia coli, GI1787213, Length=377, Percent_Identity=50.3978779840849, Blast_Score=375, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41031; Mature: 41031

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYATLKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIGKTDAERRIVVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEECCCEECCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFSLFFRPVGFDYRSKREDPRWRSAWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHH
ALFVGGFVPSLVFGVAFGNLLQGVPFSFDTDLRVTYHGGFFALLNPFAVLCGLVSVSMLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
AHGAAFVKMKADDIVAERASLALRIASFAAVVLFLIAGALIATMIGGYQLVDAAPLDTVA
HCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHH
NPLLKSVTGAPGLWLANYATYPWMVAAPVAGLAGGVLATLLARSRFEKSAFLATSLMIVG
HHHHHHHCCCCCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDGRSSLTVWDSTSSRMTLQIMLIAVIVFLPLILIYTSWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRGKVTAAALEENRHTMY
HHCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MDYATLKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIGKTDAERRIVVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEECCCEECCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFSLFFRPVGFDYRSKREDPRWRSAWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHH
ALFVGGFVPSLVFGVAFGNLLQGVPFSFDTDLRVTYHGGFFALLNPFAVLCGLVSVSMLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
AHGAAFVKMKADDIVAERASLALRIASFAAVVLFLIAGALIATMIGGYQLVDAAPLDTVA
HCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHH
NPLLKSVTGAPGLWLANYATYPWMVAAPVAGLAGGVLATLLARSRFEKSAFLATSLMIVG
HHHHHHHCCCCCCEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDGRSSLTVWDSTSSRMTLQIMLIAVIVFLPLILIYTSWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRGKVTAAALEENRHTMY
HHCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]