| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is yugF [H]
Identifier: 91783856
GI number: 91783856
Start: 2772419
End: 2773438
Strand: Direct
Name: yugF [H]
Synonym: Bxe_A1955
Alternate gene names: 91783856
Gene position: 2772419-2773438 (Clockwise)
Preceding gene: 91783855
Following gene: 91783857
Centisome position: 56.63
GC content: 63.53
Gene sequence:
>1020_bases ATGGCAAGCATCGACTCCACCACGCCCGCCTCGACCACCGCGCTGCCGCCGCGCTCGCTCGCCGCGCGCCTCGGCATCAC CAGCGTGACGCGCGACGAATTGCGGCAGCGTTATACGCAAAGCGGCTCCAGGTTCGTGAAGATCATGGGCGCCGACGTGC ACTATGTCGACGAAGGCAGCGGCGACATCATCGTGATGATCCACGGTTTCGCCTCTTCGCTGCATACGTGGAATCGCGTC GCCGATGAGCTCAAGCGCGAGCACCGCGTGATCCGCCTCGATCTGCCGCCGTTCGGCGTGACAGGACCGCTGCGCTCCAG CAGCGGCGCAATCGAAACGATGGACCTGCCCACCTATCGGCGCTTCATCGACACGTTCATGCAGGCACTCGGCATCTCGC GCGCAACCTTGATCGGCAACTCGCTCGGCGGGCTGATTTCGTGGGACTATGCGGCGCGCCATCGCGACGCCGTTGAGCGG CTCGTGTTGATCGACTCGGCCGGCTTTCCGATGAAGCTGCCGATTTACATCGGCCTGTTCAATAGCGCGCTGGTGCGGGT GAGTTCGCCCTGGTGGCTGCCTGAGGCCATCGTCAAAAGCGCGGTGCGCAACGTCTATGGCGATCCGCGCAAGATCGACG CGGTGACGCTGCGCCGCTACGTCGAGTTCTTTCACGGCGAAGGGACGCGCGCCGCGATCGGCAAGATGGTGCCGACGCTC GATTTCAGGCAAGTCGACACGAACGTGCTGAAAACATTCGATGTGCCGGCGCTGGTGCTATGGGGTGCGAAGGATCGCTG GATTCCGACGGCGCACGCCGCCGAATTCGCAAGCCGCATTCCGGGTGCGAAATCGGTCATGTATGCCGGATTAGGCCACA TTCCAATGGAAGAAGCGCCCGAACGCGTCATGGTCGATCTGCGCGCGTTTCTCGGCATCAGGCCGGCGCACTCAGCCGCC GCCGAGCAGGCGCAACAGCCCCCACAGAAATTTGCAGAGCATCACGATCAGCTCCCATAG
Upstream 100 bases:
>100_bases CACGCCCTGACCACATGAGCGGTGGCGGTTGAACCGGGAGAGAGACGCCGCCGATGCAATCCGATTCGAAGCCAATCGAA CTAAAAGGGAGACAACAATC
Downstream 100 bases:
>100_bases ATGGTAGAGCTGTTGCCAGCCCGAAACGCGCGCGAAGGAGTCGATCATGGATTCCGGCAGGAGAAGGTAAGGTCTGCGGT GACGCGGTCAATCGGGATTG
Product: Alpha/beta hydrolase fold
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MASIDSTTPASTTALPPRSLAARLGITSVTRDELRQRYTQSGSRFVKIMGADVHYVDEGSGDIIVMIHGFASSLHTWNRV ADELKREHRVIRLDLPPFGVTGPLRSSSGAIETMDLPTYRRFIDTFMQALGISRATLIGNSLGGLISWDYAARHRDAVER LVLIDSAGFPMKLPIYIGLFNSALVRVSSPWWLPEAIVKSAVRNVYGDPRKIDAVTLRRYVEFFHGEGTRAAIGKMVPTL DFRQVDTNVLKTFDVPALVLWGAKDRWIPTAHAAEFASRIPGAKSVMYAGLGHIPMEEAPERVMVDLRAFLGIRPAHSAA AEQAQQPPQKFAEHHDQLP
Sequences:
>Translated_339_residues MASIDSTTPASTTALPPRSLAARLGITSVTRDELRQRYTQSGSRFVKIMGADVHYVDEGSGDIIVMIHGFASSLHTWNRV ADELKREHRVIRLDLPPFGVTGPLRSSSGAIETMDLPTYRRFIDTFMQALGISRATLIGNSLGGLISWDYAARHRDAVER LVLIDSAGFPMKLPIYIGLFNSALVRVSSPWWLPEAIVKSAVRNVYGDPRKIDAVTLRRYVEFFHGEGTRAAIGKMVPTL DFRQVDTNVLKTFDVPALVLWGAKDRWIPTAHAAEFASRIPGAKSVMYAGLGHIPMEEAPERVMVDLRAFLGIRPAHSAA AEQAQQPPQKFAEHHDQLP >Mature_338_residues ASIDSTTPASTTALPPRSLAARLGITSVTRDELRQRYTQSGSRFVKIMGADVHYVDEGSGDIIVMIHGFASSLHTWNRVA DELKREHRVIRLDLPPFGVTGPLRSSSGAIETMDLPTYRRFIDTFMQALGISRATLIGNSLGGLISWDYAARHRDAVERL VLIDSAGFPMKLPIYIGLFNSALVRVSSPWWLPEAIVKSAVRNVYGDPRKIDAVTLRRYVEFFHGEGTRAAIGKMVPTLD FRQVDTNVLKTFDVPALVLWGAKDRWIPTAHAAEFASRIPGAKSVMYAGLGHIPMEEAPERVMVDLRAFLGIRPAHSAAA EQAQQPPQKFAEHHDQLP
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dmpD/todF/xylF esterase family [H]
Homologues:
Organism=Caenorhabditis elegans, GI17562298, Length=289, Percent_Identity=22.1453287197232, Blast_Score=72, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 37492; Mature: 37360
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASIDSTTPASTTALPPRSLAARLGITSVTRDELRQRYTQSGSRFVKIMGADVHYVDEGS CCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCC GDIIVMIHGFASSLHTWNRVADELKREHRVIRLDLPPFGVTGPLRSSSGAIETMDLPTYR CCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECCCHHHH RFIDTFMQALGISRATLIGNSLGGLISWDYAARHRDAVERLVLIDSAGFPMKLPIYIGLF HHHHHHHHHHCCCHHHHHHCCCCCCEEHHHHHHHHHHHHHEEEEECCCCCEECCEEEEEH NSALVRVSSPWWLPEAIVKSAVRNVYGDPRKIDAVTLRRYVEFFHGEGTRAAIGKMVPTL HHHHEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCC DFRQVDTNVLKTFDVPALVLWGAKDRWIPTAHAAEFASRIPGAKSVMYAGLGHIPMEEAP CHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHHH ERVMVDLRAFLGIRPAHSAAAEQAQQPPQKFAEHHDQLP HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCCC >Mature Secondary Structure ASIDSTTPASTTALPPRSLAARLGITSVTRDELRQRYTQSGSRFVKIMGADVHYVDEGS CCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCC GDIIVMIHGFASSLHTWNRVADELKREHRVIRLDLPPFGVTGPLRSSSGAIETMDLPTYR CCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECCCHHHH RFIDTFMQALGISRATLIGNSLGGLISWDYAARHRDAVERLVLIDSAGFPMKLPIYIGLF HHHHHHHHHHCCCHHHHHHCCCCCCEEHHHHHHHHHHHHHEEEEECCCCCEECCEEEEEH NSALVRVSSPWWLPEAIVKSAVRNVYGDPRKIDAVTLRRYVEFFHGEGTRAAIGKMVPTL HHHHEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCC DFRQVDTNVLKTFDVPALVLWGAKDRWIPTAHAAEFASRIPGAKSVMYAGLGHIPMEEAP CHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHHH ERVMVDLRAFLGIRPAHSAAAEQAQQPPQKFAEHHDQLP HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9274030; 9384377 [H]