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The map label for this gene is rbcR [H]

Identifier: 91783834

GI number: 91783834

Start: 2742353

End: 2743243

Strand: Reverse

Name: rbcR [H]

Synonym: Bxe_A1978

Alternate gene names: 91783834

Gene position: 2743243-2742353 (Counterclockwise)

Preceding gene: 91783841

Following gene: 91783833

Centisome position: 56.03

GC content: 69.81

Gene sequence:

>891_bases
ATGACCCCGGATCAACTTATAACGTTTGCCGCTGTCGCCGAGCATCGCAATATCAGCCGGGCGGCCGTGGCGCTGCATCT
ATCGCAGCCGGCCGTGTCCGGCCAGCTGCGGCAGTTGCAGGACGAGTTCGGCGAGCCGCTCTATCAGCGTGACGGCCGCG
GCGTGCGCCTGACACCGGCGGGCGAGCAGCTCGCCAGTTACGCCACGCGGCTGCGCGACACGTGGCGGCAGGCGCACGCA
TACCGCGACGCTTTGCGCGGTCTCGAGCAGGGCACCTTGCGGATCGGCGCGAGCACCACGCCCGCGAGCTACCTGCTGCC
GTATCTGATCGCCGACTTCCATCGCCGTTATCCGGACGTGACGCTGCATACCGCGGACGGCAATACCACCGAGATCGTCA
GCGCGCTCGGCTCGGTGGATATCGCGTTGATCGAGGGGCCGGTCGGCGAGGATCTGCCGCCGGACACCGCCGTGCATGCC
TGGCGCGAGGACGAAATCGTCGCGATCATGCCGCGCTCGCATCCGTTGGCGCAGTTGGGCGACGGCGGCCTGGCCGGCCT
CGCGGCCTTCGGCGAGCATCCGCTGGTGTTGCGCGAGGCGGGCTCCGGCGTGCGGCAGATCGTCGAGCGCGCATTCGCGC
GGGCCGGCGTGCCGATGCGCGTGGCGCTGGAGATCGCCGGCGTGGAAGGCGTGAAGGAAGCGGTACGGGCGGGCATGGGC
ATCGGCTTCGTCTCGGCGATGTCGATGCGCCACGAAGACCGCGCGCTGTGCCTGCTGTCGCTGAGCCCGGAGCCGCTCAC
ACGGCGGCTGTCGATTCTCGTGCCCCATGCGAGCGCGCCGTCGCGCGTCGTGGAGCGGTTTCTCGCGCTGTGTCTCGACG
ACGGACCTTGA

Upstream 100 bases:

>100_bases
ACTGACTGAAATTCGATGGGCTAATCCTAAAGTAGATATATCGATATGAAAAATCATCATTTAGAATGTGAAGTATCAAT
TCATCCGATACTTAGCCGCC

Downstream 100 bases:

>100_bases
AACGGGCAGGCCCACGCTCGCGCCAGGCGCGCCTGGGGATTTCCACTATGGTGTGCCGCGGCGGCCTCGGCGCACTATTC
GGGCATCGCAAGCGCCTCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTPDQLITFAAVAEHRNISRAAVALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPAGEQLASYATRLRDTWRQAHA
YRDALRGLEQGTLRIGASTTPASYLLPYLIADFHRRYPDVTLHTADGNTTEIVSALGSVDIALIEGPVGEDLPPDTAVHA
WREDEIVAIMPRSHPLAQLGDGGLAGLAAFGEHPLVLREAGSGVRQIVERAFARAGVPMRVALEIAGVEGVKEAVRAGMG
IGFVSAMSMRHEDRALCLLSLSPEPLTRRLSILVPHASAPSRVVERFLALCLDDGP

Sequences:

>Translated_296_residues
MTPDQLITFAAVAEHRNISRAAVALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPAGEQLASYATRLRDTWRQAHA
YRDALRGLEQGTLRIGASTTPASYLLPYLIADFHRRYPDVTLHTADGNTTEIVSALGSVDIALIEGPVGEDLPPDTAVHA
WREDEIVAIMPRSHPLAQLGDGGLAGLAAFGEHPLVLREAGSGVRQIVERAFARAGVPMRVALEIAGVEGVKEAVRAGMG
IGFVSAMSMRHEDRALCLLSLSPEPLTRRLSILVPHASAPSRVVERFLALCLDDGP
>Mature_295_residues
TPDQLITFAAVAEHRNISRAAVALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPAGEQLASYATRLRDTWRQAHAY
RDALRGLEQGTLRIGASTTPASYLLPYLIADFHRRYPDVTLHTADGNTTEIVSALGSVDIALIEGPVGEDLPPDTAVHAW
REDEIVAIMPRSHPLAQLGDGGLAGLAAFGEHPLVLREAGSGVRQIVERAFARAGVPMRVALEIAGVEGVKEAVRAGMGI
GFVSAMSMRHEDRALCLLSLSPEPLTRRLSILVPHASAPSRVVERFLALCLDDGP

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=298, Percent_Identity=31.8791946308725, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=32.8813559322034, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787530, Length=262, Percent_Identity=30.9160305343511, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788748, Length=257, Percent_Identity=30.7392996108949, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1790399, Length=288, Percent_Identity=29.8611111111111, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787879, Length=281, Percent_Identity=28.8256227758007, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788296, Length=249, Percent_Identity=29.3172690763052, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI87081904, Length=140, Percent_Identity=36.4285714285714, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787806, Length=299, Percent_Identity=25.752508361204, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790208, Length=278, Percent_Identity=28.0575539568345, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788887, Length=173, Percent_Identity=33.5260115606936, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=22.680412371134, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788626, Length=239, Percent_Identity=29.2887029288703, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87082132, Length=257, Percent_Identity=24.9027237354086, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=153, Percent_Identity=27.4509803921569, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI48994962, Length=124, Percent_Identity=34.6774193548387, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789204, Length=286, Percent_Identity=29.020979020979, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31921; Mature: 31790

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDQLITFAAVAEHRNISRAAVALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPA
CCHHHHHHHHHHHHHCCCHHHHHEEEECCCCHHHHHHHHHHHHCCHHHHCCCCCEEECCC
GEQLASYATRLRDTWRQAHAYRDALRGLEQGTLRIGASTTPASYLLPYLIADFHRRYPDV
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCE
TLHTADGNTTEIVSALGSVDIALIEGPVGEDLPPDTAVHAWREDEIVAIMPRSHPLAQLG
EEEECCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCHHHHC
DGGLAGLAAFGEHPLVLREAGSGVRQIVERAFARAGVPMRVALEIAGVEGVKEAVRAGMG
CCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCC
IGFVSAMSMRHEDRALCLLSLSPEPLTRRLSILVPHASAPSRVVERFLALCLDDGP
HHHHHHHHHCCCCCEEEEEECCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TPDQLITFAAVAEHRNISRAAVALHLSQPAVSGQLRQLQDEFGEPLYQRDGRGVRLTPA
CHHHHHHHHHHHHHCCCHHHHHEEEECCCCHHHHHHHHHHHHCCHHHHCCCCCEEECCC
GEQLASYATRLRDTWRQAHAYRDALRGLEQGTLRIGASTTPASYLLPYLIADFHRRYPDV
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCE
TLHTADGNTTEIVSALGSVDIALIEGPVGEDLPPDTAVHAWREDEIVAIMPRSHPLAQLG
EEEECCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCHHHHC
DGGLAGLAAFGEHPLVLREAGSGVRQIVERAFARAGVPMRVALEIAGVEGVKEAVRAGMG
CCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCC
IGFVSAMSMRHEDRALCLLSLSPEPLTRRLSILVPHASAPSRVVERFLALCLDDGP
HHHHHHHHHCCCCCEEEEEECCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]