| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is bsdB [H]
Identifier: 91783742
GI number: 91783742
Start: 2641516
End: 2642172
Strand: Reverse
Name: bsdB [H]
Synonym: Bxe_A2072
Alternate gene names: 91783742
Gene position: 2642172-2641516 (Counterclockwise)
Preceding gene: 91783743
Following gene: 91783741
Centisome position: 53.97
GC content: 67.43
Gene sequence:
>657_bases ATGGCTGAGCAGGAACATGAGCACGAACATGAGCACAAGCGTGGGCAGACGCGCGAGCGCATCGTGGTGGGCCTTTCCGG CGCGAGCGGCGCGATGATCGGCGTGCGTCTGCTCGCCGCGTTGCGGCGCCTCGGCACGCACGAAACGCATCTGATCGTAT CGGCCTCCGGCGCGCTCACGGCGGCCCAGGAACTCGGCATCACGCGCGGCGACCTGGAGCGCGTGGCCGATGTGGTCTAC AACGTGCGCGACATCGGCGCGGCCGTGGCGAGCGGTTCGTTCATCACGGCGGGCATGGTGATCGCGCCGTGCTCGATGAA GACGCTCGCCGGCGTGGCCAACGGTTTCGCCGACAACCTGCTCACGCGCGCCGCCGACGTGATGCTCAAGGAGCGCCGCC GGCTCGTGCTGGTCGCGCGCGAAACGCCGCTCAACCTCGCGCATCTGCGCAATATGACGCTCGCCACCGAAATGGGCGCG ATCGTCATGCCGCCGGTGCCCGCGTTCTACGTGCACCCCAGGACCATCGAGGACGTGGTCGATCACACCGTGGGGCGCAT TCTCGATCTGTTCGGTATCGAGCATCGCGAGATCGCGCAACGCTGGAGCGGACTCGCCGATGAATTCGGTGAGCGCCGTG CGGGAGTCGACCAATGA
Upstream 100 bases:
>100_bases GTGTTCACGCGCGTGCGGATTCCGGGGCAGGACACGGTGGACCTGGACGCGCTCGTCGCTGCGGACAACACCGCGTTCGA CGCGTATCTGGATGGCGCTC
Downstream 100 bases:
>100_bases ATCAACGCGACATGCTCCATGCAGGCGACGCCGCGACGCAGGAACGCGACACGGAGTTGGAAAAACGCCCGCAGCGGCAT CTTGGCCGCCCGATGCAACG
Product: putative aromatic acid decarboxylase, flavoprotein
Products: NA
Alternate protein names: PAD; 4-hydroxybenzoate decarboxylase subunit B; 4-hydroxybenzoate DC; Phenylacrylic acid decarboxylase subunit B; Vanillate decarboxylase subunit B [H]
Number of amino acids: Translated: 218; Mature: 217
Protein sequence:
>218_residues MAEQEHEHEHEHKRGQTRERIVVGLSGASGAMIGVRLLAALRRLGTHETHLIVSASGALTAAQELGITRGDLERVADVVY NVRDIGAAVASGSFITAGMVIAPCSMKTLAGVANGFADNLLTRAADVMLKERRRLVLVARETPLNLAHLRNMTLATEMGA IVMPPVPAFYVHPRTIEDVVDHTVGRILDLFGIEHREIAQRWSGLADEFGERRAGVDQ
Sequences:
>Translated_218_residues MAEQEHEHEHEHKRGQTRERIVVGLSGASGAMIGVRLLAALRRLGTHETHLIVSASGALTAAQELGITRGDLERVADVVY NVRDIGAAVASGSFITAGMVIAPCSMKTLAGVANGFADNLLTRAADVMLKERRRLVLVARETPLNLAHLRNMTLATEMGA IVMPPVPAFYVHPRTIEDVVDHTVGRILDLFGIEHREIAQRWSGLADEFGERRAGVDQ >Mature_217_residues AEQEHEHEHEHKRGQTRERIVVGLSGASGAMIGVRLLAALRRLGTHETHLIVSASGALTAAQELGITRGDLERVADVVYN VRDIGAAVASGSFITAGMVIAPCSMKTLAGVANGFADNLLTRAADVMLKERRRLVLVARETPLNLAHLRNMTLATEMGAI VMPPVPAFYVHPRTIEDVVDHTVGRILDLFGIEHREIAQRWSGLADEFGERRAGVDQ
Specific function: Part of the BsdBCD complex involved in the decarboxylation and detoxification of phenolic derivatives under both aerobic and anaerobic conditions. It is able to catalyze the reversible decarboxylation of 4-hydroxybenzoate, vanillate and salicylate. Is not
COG id: COG0163
COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polyprenyl p-hydroxybenzoate / phenylacrylic acid decarboxylases family [H]
Homologues:
Organism=Escherichia coli, GI1788650, Length=187, Percent_Identity=53.475935828877, Blast_Score=204, Evalue=4e-54, Organism=Saccharomyces cerevisiae, GI6320746, Length=207, Percent_Identity=45.4106280193237, Blast_Score=189, Evalue=3e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003382 - InterPro: IPR004507 [H]
Pfam domain/function: PF02441 Flavoprotein [H]
EC number: =4.1.1.61 [H]
Molecular weight: Translated: 23667; Mature: 23535
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEQEHEHEHEHKRGQTRERIVVGLSGASGAMIGVRLLAALRRLGTHETHLIVSASGALT CCCCHHHHHHHHHCCCCHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHH AAQELGITRGDLERVADVVYNVRDIGAAVASGSFITAGMVIAPCSMKTLAGVANGFADNL HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH LTRAADVMLKERRRLVLVARETPLNLAHLRNMTLATEMGAIVMPPVPAFYVHPRTIEDVV HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCEEECCCHHHHHH DHTVGRILDLFGIEHREIAQRWSGLADEFGERRAGVDQ HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure AEQEHEHEHEHKRGQTRERIVVGLSGASGAMIGVRLLAALRRLGTHETHLIVSASGALT CCCHHHHHHHHHCCCCHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHH AAQELGITRGDLERVADVVYNVRDIGAAVASGSFITAGMVIAPCSMKTLAGVANGFADNL HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH LTRAADVMLKERRRLVLVARETPLNLAHLRNMTLATEMGAIVMPPVPAFYVHPRTIEDVV HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCEEECCCHHHHHH DHTVGRILDLFGIEHREIAQRWSGLADEFGERRAGVDQ HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969502; 9384377 [H]