| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91783162
Identifier: 91783162
GI number: 91783162
Start: 2009519
End: 2010532
Strand: Direct
Name: 91783162
Synonym: Bxe_A2643
Alternate gene names: NA
Gene position: 2009519-2010532 (Clockwise)
Preceding gene: 91783161
Following gene: 91783175
Centisome position: 41.05
GC content: 65.29
Gene sequence:
>1014_bases ATGCCTTACCCGAAAATCTACATCGACGCGATGCTTGTGAACTGGGGTGACCGGCTGTTTCAGGAGCCGCTTCGGCATGC CCGTGCCTTGCGTCTCTCGCATGCAGGCATTCGGGACGAAGCCGCCCGCATGCGCGCCCAGATAGCCCGCACGCTCAGGC GTACTCCGGAGGTGATGGTCAAGATCACCAACAAGGCGGCCCGTGCTCAGGGCATGGGCGCCGTGCGCCGACATCTGCGC TATATCTCCCGTAACGGCAGGATTGAGCTCGAAGACCAGGACGGCGACCGTATCGCCGGTGTCGATGCGTTGCGCGATCT TACGAAGGCCTGGCAGCTCGGTGGATGGGGTATCCCGGAGACCAGTACGCGGCGCGAGGTTTTCAATATCCTGCTGTCGA TGCCACCGGGCACGGACCGGCAGGCTGTGCGCGACGCGGCGCGGGACTTTGCAACACAGGAGTTTGGCGACGGACGGGCC TACGTCTTCGCGGCGCATGACGATGAAGCTCATCCGCACGTGCATCTGAGCGTGCAGGTGCGCGGTCCCGATGGGCACCG CCTGAATCCGCGCCACAAGGATCTTCAGCGCTGGCGTGAACGCTTTGCGGAGCAATTGCGCGAGTATGGCGTTGACGGGA ACGCGACACCCAGACGCGCGCGCGGCGCGACGCAACGGTATCCGAAGCCCGCAGTTGTGCACATGATCGCGCGTGGCGAG ACGCCGAGGCACTGGACGCCGCTGCCGACCGATGCGCAGCGTGACGCAGGGTGGGTAGCGCATGGTGGTGTCTTTGCTGC CTGGCGTGAGATGGCCTATACGATGGCGAAGTCGCGCGCCCGCGAGGATCGTGCGATGGCAGTCGAGATGGCGTATTTCG TCGGGGCTATGCCGGTGCAGCAACACCGGCCTGTGGTCGGGCGCACGCAGGACATCGGGCGCGAGCAGCCGGATCGAACG ACGCCCGTGGCAGACGGTCGGTCGGATGGCGTCGGACCGGATGTTGAGCGCTGA
Upstream 100 bases:
>100_bases TGGATGGCCGACTGGACGGAAATCCGGAGCCGGATTGATGCTCACCTGCGTGCGACTGCGGCCGTCATTCGCACGAACCT GGACCGATGGAGCCGCTGAC
Downstream 100 bases:
>100_bases TATGTGGAATATGTGGAGGGACTGATGGTCATGTCCATCGTGCCGTGGATAGGTGGCAAGCGCCGTCTGGCCGATATCCT GATTCCGCGTTTCCCGCCGT
Product: putative DNA relaxase/nickase, TraS/VirD2- like
Products: NA
Alternate protein names: DNA Relaxase/Nickase TraS/VirD2-Like Protein; Type IV Secretory Pathway VirD2 Component; Nickase; DNA Relaxase/Nickase TraS/VirD2-Like; Plasmid-Related Protein; Type IV Secretory Pathway VirD2 Components; VirD2-Like Protein; Relaxase/Mobilisation Nuclease; Nickase/Relaxase; DNA Relaxase/Nickase TraS/VirD2- Like
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MPYPKIYIDAMLVNWGDRLFQEPLRHARALRLSHAGIRDEAARMRAQIARTLRRTPEVMVKITNKAARAQGMGAVRRHLR YISRNGRIELEDQDGDRIAGVDALRDLTKAWQLGGWGIPETSTRREVFNILLSMPPGTDRQAVRDAARDFATQEFGDGRA YVFAAHDDEAHPHVHLSVQVRGPDGHRLNPRHKDLQRWRERFAEQLREYGVDGNATPRRARGATQRYPKPAVVHMIARGE TPRHWTPLPTDAQRDAGWVAHGGVFAAWREMAYTMAKSRAREDRAMAVEMAYFVGAMPVQQHRPVVGRTQDIGREQPDRT TPVADGRSDGVGPDVER
Sequences:
>Translated_337_residues MPYPKIYIDAMLVNWGDRLFQEPLRHARALRLSHAGIRDEAARMRAQIARTLRRTPEVMVKITNKAARAQGMGAVRRHLR YISRNGRIELEDQDGDRIAGVDALRDLTKAWQLGGWGIPETSTRREVFNILLSMPPGTDRQAVRDAARDFATQEFGDGRA YVFAAHDDEAHPHVHLSVQVRGPDGHRLNPRHKDLQRWRERFAEQLREYGVDGNATPRRARGATQRYPKPAVVHMIARGE TPRHWTPLPTDAQRDAGWVAHGGVFAAWREMAYTMAKSRAREDRAMAVEMAYFVGAMPVQQHRPVVGRTQDIGREQPDRT TPVADGRSDGVGPDVER >Mature_336_residues PYPKIYIDAMLVNWGDRLFQEPLRHARALRLSHAGIRDEAARMRAQIARTLRRTPEVMVKITNKAARAQGMGAVRRHLRY ISRNGRIELEDQDGDRIAGVDALRDLTKAWQLGGWGIPETSTRREVFNILLSMPPGTDRQAVRDAARDFATQEFGDGRAY VFAAHDDEAHPHVHLSVQVRGPDGHRLNPRHKDLQRWRERFAEQLREYGVDGNATPRRARGATQRYPKPAVVHMIARGET PRHWTPLPTDAQRDAGWVAHGGVFAAWREMAYTMAKSRAREDRAMAVEMAYFVGAMPVQQHRPVVGRTQDIGREQPDRTT PVADGRSDGVGPDVER
Specific function: Unknown
COG id: COG3843
COG function: function code U; Type IV secretory pathway, VirD2 components (relaxase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38217; Mature: 38086
Theoretical pI: Translated: 10.79; Mature: 10.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYPKIYIDAMLVNWGDRLFQEPLRHARALRLSHAGIRDEAARMRAQIARTLRRTPEVMV CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHEE KITNKAARAQGMGAVRRHLRYISRNGRIELEDQDGDRIAGVDALRDLTKAWQLGGWGIPE EEHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEHHHHHHHHHHHHHHCCCCCCCC TSTRREVFNILLSMPPGTDRQAVRDAARDFATQEFGDGRAYVFAAHDDEAHPHVHLSVQV CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEE RGPDGHRLNPRHKDLQRWRERFAEQLREYGVDGNATPRRARGATQRYPKPAVVHMIARGE ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHCCCCHHHHHHHHCCC TPRHWTPLPTDAQRDAGWVAHGGVFAAWREMAYTMAKSRAREDRAMAVEMAYFVGAMPVQ CCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH QHRPVVGRTQDIGREQPDRTTPVADGRSDGVGPDVER HCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PYPKIYIDAMLVNWGDRLFQEPLRHARALRLSHAGIRDEAARMRAQIARTLRRTPEVMV CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHEE KITNKAARAQGMGAVRRHLRYISRNGRIELEDQDGDRIAGVDALRDLTKAWQLGGWGIPE EEHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEHHHHHHHHHHHHHHCCCCCCCC TSTRREVFNILLSMPPGTDRQAVRDAARDFATQEFGDGRAYVFAAHDDEAHPHVHLSVQV CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEE RGPDGHRLNPRHKDLQRWRERFAEQLREYGVDGNATPRRARGATQRYPKPAVVHMIARGE ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHCCCCHHHHHHHHCCC TPRHWTPLPTDAQRDAGWVAHGGVFAAWREMAYTMAKSRAREDRAMAVEMAYFVGAMPVQ CCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH QHRPVVGRTQDIGREQPDRTTPVADGRSDGVGPDVER HCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA