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The map label for this gene is yhjC [H]

Identifier: 91783116

GI number: 91783116

Start: 1965121

End: 1966017

Strand: Direct

Name: yhjC [H]

Synonym: Bxe_A2691

Alternate gene names: 91783116

Gene position: 1965121-1966017 (Clockwise)

Preceding gene: 91783112

Following gene: 91783121

Centisome position: 40.14

GC content: 64.88

Gene sequence:

>897_bases
ATGGATCGGATCGACGCCATGCGCCTGCTCGTCCGGATCGTGGAGCGCGGCAGTTTTGCTGCCGCCGCGCGGGATCTGGA
CGTGCCGCGTTCGAGCGTGACGCAGGGGATTCAGGAACTGGAGCGGCGCCTCGGCGCGCAGTTGCTTCAGCGGACGACGC
GGCAGGTGCGGCCGACGCTCGACGGCGAGGCTTTCTACCGGCGTTGTCTTGGCATCATTGCGGATGTCGAGGAAGCCGAA
GCCGCATTCAACGGCGCAAAGCCGTCGGGTCTGGTGCGAGTCGACGTTCACGGCACACTCGCGCGATATTTCATGATGCC
AGCGTTACCGAGCTTTCTGGACACCTATCCGGATATCCAGGTGCAGATCAGCGAGGCGGATCGTCTGGTGGATCTGACTC
GCGATGGCGTCGACTGCGTGCTTCGGGTGGGCGAACTTCCGGACAGCTCACTGGTCGGGCGCCGGATTGCCATGCTGAAG
CAGGGGACGTTTGCCAGCCCGGAATATCTGGCGCGGCACGGCGTGCCGCAGCATCCTGCTCAACTTGAGGGGCACCGCAT
GGTTGGCTACCTGTCCCAGATCACGGGCGAGATTATCCCGCTGGAATTCCTGGTGGCCGGGAAGCGCCAGAGCATGACAT
TGCCGGCCAGCGTCATGGTGACGGGCGCTGAAACGAACATTAGCGCCGCCCGGCTGGGACTGGGTCTGGTCCAGGTGCCG
CGCTACCGCGTGGCCGATGATCTCTCGGCGGGAACGCTGGCGGAAGTGCTGGGGAAATTTCCCCCGCGGCCGCTGCCTGT
CCACGTGCTGTACACGCGCACGCCCCAGCTCTCGCCGCGCGTGCGCGTGTTCGTGGACTGGCTGGCGAAGGAATTTGCCG
CCAGATTATCCGACTGA

Upstream 100 bases:

>100_bases
CTGTACGGGTTGAATGACTGCGGAGGAAAGATAGTCCTTTTTGGTATGGCGGATAAACTGGCTAGAATTGGCATCACAAT
TCTGAATCTGGAACAATGGA

Downstream 100 bases:

>100_bases
TCAGGTATGAGGAGCGCCCGTGGCATCGGTTACGCGCCTGCCTGCCGCGGAGAGCTTGTGTACGAGCGGGATCGCCTTGC
ACTGGAGATTTGGCCTGGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MDRIDAMRLLVRIVERGSFAAAARDLDVPRSSVTQGIQELERRLGAQLLQRTTRQVRPTLDGEAFYRRCLGIIADVEEAE
AAFNGAKPSGLVRVDVHGTLARYFMMPALPSFLDTYPDIQVQISEADRLVDLTRDGVDCVLRVGELPDSSLVGRRIAMLK
QGTFASPEYLARHGVPQHPAQLEGHRMVGYLSQITGEIIPLEFLVAGKRQSMTLPASVMVTGAETNISAARLGLGLVQVP
RYRVADDLSAGTLAEVLGKFPPRPLPVHVLYTRTPQLSPRVRVFVDWLAKEFAARLSD

Sequences:

>Translated_298_residues
MDRIDAMRLLVRIVERGSFAAAARDLDVPRSSVTQGIQELERRLGAQLLQRTTRQVRPTLDGEAFYRRCLGIIADVEEAE
AAFNGAKPSGLVRVDVHGTLARYFMMPALPSFLDTYPDIQVQISEADRLVDLTRDGVDCVLRVGELPDSSLVGRRIAMLK
QGTFASPEYLARHGVPQHPAQLEGHRMVGYLSQITGEIIPLEFLVAGKRQSMTLPASVMVTGAETNISAARLGLGLVQVP
RYRVADDLSAGTLAEVLGKFPPRPLPVHVLYTRTPQLSPRVRVFVDWLAKEFAARLSD
>Mature_298_residues
MDRIDAMRLLVRIVERGSFAAAARDLDVPRSSVTQGIQELERRLGAQLLQRTTRQVRPTLDGEAFYRRCLGIIADVEEAE
AAFNGAKPSGLVRVDVHGTLARYFMMPALPSFLDTYPDIQVQISEADRLVDLTRDGVDCVLRVGELPDSSLVGRRIAMLK
QGTFASPEYLARHGVPQHPAQLEGHRMVGYLSQITGEIIPLEFLVAGKRQSMTLPASVMVTGAETNISAARLGLGLVQVP
RYRVADDLSAGTLAEVLGKFPPRPLPVHVLYTRTPQLSPRVRVFVDWLAKEFAARLSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=37.4581939799331, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=32.4324324324324, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=28.3737024221453, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787589, Length=287, Percent_Identity=27.1777003484321, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787128, Length=274, Percent_Identity=26.6423357664234, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI87081978, Length=307, Percent_Identity=28.0130293159609, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789440, Length=294, Percent_Identity=27.891156462585, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788706, Length=276, Percent_Identity=22.463768115942, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789173, Length=141, Percent_Identity=29.0780141843972, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32851; Mature: 32851

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIDAMRLLVRIVERGSFAAAARDLDVPRSSVTQGIQELERRLGAQLLQRTTRQVRPTL
CCHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DGEAFYRRCLGIIADVEEAEAAFNGAKPSGLVRVDVHGTLARYFMMPALPSFLDTYPDIQ
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCE
VQISEADRLVDLTRDGVDCVLRVGELPDSSLVGRRIAMLKQGTFASPEYLARHGVPQHPA
EEECCHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCC
QLEGHRMVGYLSQITGEIIPLEFLVAGKRQSMTLPASVMVTGAETNISAARLGLGLVQVP
CCCCHHHHHHHHHHCCCCCCHHHEECCCCCCCCCCCEEEEECCCCCCHHHHHCCCHHHCC
RYRVADDLSAGTLAEVLGKFPPRPLPVHVLYTRTPQLSPRVRVFVDWLAKEFAARLSD
CHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRIDAMRLLVRIVERGSFAAAARDLDVPRSSVTQGIQELERRLGAQLLQRTTRQVRPTL
CCHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DGEAFYRRCLGIIADVEEAEAAFNGAKPSGLVRVDVHGTLARYFMMPALPSFLDTYPDIQ
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCE
VQISEADRLVDLTRDGVDCVLRVGELPDSSLVGRRIAMLKQGTFASPEYLARHGVPQHPA
EEECCHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCC
QLEGHRMVGYLSQITGEIIPLEFLVAGKRQSMTLPASVMVTGAETNISAARLGLGLVQVP
CCCCHHHHHHHHHHCCCCCCHHHEECCCCCCCCCCCEEEEECCCCCCHHHHHCCCHHHCC
RYRVADDLSAGTLAEVLGKFPPRPLPVHVLYTRTPQLSPRVRVFVDWLAKEFAARLSD
CHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]