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The map label for this gene is yfeR [H]

Identifier: 91782983

GI number: 91782983

Start: 1813634

End: 1814536

Strand: Direct

Name: yfeR [H]

Synonym: Bxe_A2826

Alternate gene names: 91782983

Gene position: 1813634-1814536 (Clockwise)

Preceding gene: 91782980

Following gene: 91782984

Centisome position: 37.04

GC content: 68.77

Gene sequence:

>903_bases
ATGAATGTCACGCTGCGCCAGCTTAGGGTTTTCATCGAGGTCGCCCGTCTGCAAAGCTTCAGCCGGGCCGGCGATGAAAT
CGGCCTGACGCAGTCGGCCGTCAGCCGCTGCGTGCGCGAACTGGAGAGCGAGATCGGCCTCAAGCTGATCGATCGCACCA
CCCGCGAGGTGCAGCTCACGGACGTGGGCGGCAACCTGGTGTCGAGCGTGTCGCGTCTGCTGACGGATCTGGACGACGCA
CTGCGCGAGATTCGCGAAATCGGCGAGCAGCGTCGCGGACGGGTGGTGGTGGCCGCGAGCCCGACGGTGGCCTGCCGGCT
CATGCCGCGCGTGGTGGCCGCGTGCGGGCAGCAGTTTCCCTACGTCGCGCTGGGTCTGCGCGACGACGTTCAGAGCGACG
TGGTGCGCAAGGTCAAGTCGGGCGAAGTCGACTTCGGCGTGATCATCGGCCCATTCGCCGCGGACGACCTGCTCAGCGAA
TCGCTGATGACGGACTCGTTCTGCGTCGTTTGCCGCGACGATAATCCGCTGGCGGCCCAGGAGCGGGTAGCCTGGACGGA
CCTGGAAGGCCAGCAGCTCGTCATGCTCGATTACGCGTCGGGCAGCCGGCCGATCATCGACGCCGTGATGCAGGAATACG
GCGTGAGCGCCACGGTGGTGCAGGAGCTGGGGCATTCCGCGACCGTTTTCGGGCTGGTCGAGGCGGGTGTCGGCGTGAGC
GTGCTGCCGTGGCTGGCATTGCCGCTGCCGGCTGGCGCCTCGCTGGTTGCCCGGCCGCTCGTGCCGCGCGCCGAGCGAAC
GGTCGAACTGGTGCGCCGGCGTGACCGCTCGCTGTCGCCGGCGGCGGAGGCGGTGTGGGGGCTGATTCGCCAATTGCCGG
GGCGGGCGGAGGACCTGGCGTAG

Upstream 100 bases:

>100_bases
CGCCTTATTGCCGCATTGCAGCGTGATCGCTGAAAGCGAACATGGTGCTGACTTTCGCCATACAATGCGCATCAAATGAT
GCAATTGATGAGGTCGGTAA

Downstream 100 bases:

>100_bases
TTCCGGGTTATTTGCGGCACGGTGAGCTTGATGCTTCGCTGGGCTTGGCAAGCGCGCGTTGGGAGGCAAAAAAGCGCGTC
ATGAGCGAGCTTTCCGTGGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNVTLRQLRVFIEVARLQSFSRAGDEIGLTQSAVSRCVRELESEIGLKLIDRTTREVQLTDVGGNLVSSVSRLLTDLDDA
LREIREIGEQRRGRVVVAASPTVACRLMPRVVAACGQQFPYVALGLRDDVQSDVVRKVKSGEVDFGVIIGPFAADDLLSE
SLMTDSFCVVCRDDNPLAAQERVAWTDLEGQQLVMLDYASGSRPIIDAVMQEYGVSATVVQELGHSATVFGLVEAGVGVS
VLPWLALPLPAGASLVARPLVPRAERTVELVRRRDRSLSPAAEAVWGLIRQLPGRAEDLA

Sequences:

>Translated_300_residues
MNVTLRQLRVFIEVARLQSFSRAGDEIGLTQSAVSRCVRELESEIGLKLIDRTTREVQLTDVGGNLVSSVSRLLTDLDDA
LREIREIGEQRRGRVVVAASPTVACRLMPRVVAACGQQFPYVALGLRDDVQSDVVRKVKSGEVDFGVIIGPFAADDLLSE
SLMTDSFCVVCRDDNPLAAQERVAWTDLEGQQLVMLDYASGSRPIIDAVMQEYGVSATVVQELGHSATVFGLVEAGVGVS
VLPWLALPLPAGASLVARPLVPRAERTVELVRRRDRSLSPAAEAVWGLIRQLPGRAEDLA
>Mature_300_residues
MNVTLRQLRVFIEVARLQSFSRAGDEIGLTQSAVSRCVRELESEIGLKLIDRTTREVQLTDVGGNLVSSVSRLLTDLDDA
LREIREIGEQRRGRVVVAASPTVACRLMPRVVAACGQQFPYVALGLRDDVQSDVVRKVKSGEVDFGVIIGPFAADDLLSE
SLMTDSFCVVCRDDNPLAAQERVAWTDLEGQQLVMLDYASGSRPIIDAVMQEYGVSATVVQELGHSATVFGLVEAGVGVS
VLPWLALPLPAGASLVARPLVPRAERTVELVRRRDRSLSPAAEAVWGLIRQLPGRAEDLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=47.9310344827586, Blast_Score=278, Evalue=3e-76,
Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=30.7167235494881, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI157672245, Length=285, Percent_Identity=29.1228070175439, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1788481, Length=284, Percent_Identity=31.3380281690141, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=28.4, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790399, Length=292, Percent_Identity=27.0547945205479, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788887, Length=279, Percent_Identity=25.089605734767, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787601, Length=179, Percent_Identity=28.4916201117318, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789204, Length=292, Percent_Identity=26.3698630136986, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI2367136, Length=239, Percent_Identity=25.1046025104602, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786401, Length=175, Percent_Identity=31.4285714285714, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081904, Length=216, Percent_Identity=28.2407407407407, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788297, Length=290, Percent_Identity=24.4827586206897, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787128, Length=204, Percent_Identity=26.9607843137255, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787530, Length=258, Percent_Identity=23.2558139534884, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789173, Length=247, Percent_Identity=27.5303643724696, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790783, Length=304, Percent_Identity=23.3552631578947, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789506, Length=242, Percent_Identity=23.5537190082645, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=169, Percent_Identity=28.9940828402367, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081978, Length=240, Percent_Identity=26.25, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790011, Length=112, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI145693193, Length=130, Percent_Identity=30, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787589, Length=153, Percent_Identity=29.4117647058824, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=23.0452674897119, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790208, Length=247, Percent_Identity=24.2914979757085, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32559; Mature: 32559

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTLRQLRVFIEVARLQSFSRAGDEIGLTQSAVSRCVRELESEIGLKLIDRTTREVQLT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCEEEEE
DVGGNLVSSVSRLLTDLDDALREIREIGEQRRGRVVVAASPTVACRLMPRVVAACGQQFP
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCC
YVALGLRDDVQSDVVRKVKSGEVDFGVIIGPFAADDLLSESLMTDSFCVVCRDDNPLAAQ
EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHH
ERVAWTDLEGQQLVMLDYASGSRPIIDAVMQEYGVSATVVQELGHSATVFGLVEAGVGVS
HCCEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHCCCHH
VLPWLALPLPAGASLVARPLVPRAERTVELVRRRDRSLSPAAEAVWGLIRQLPGRAEDLA
HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNVTLRQLRVFIEVARLQSFSRAGDEIGLTQSAVSRCVRELESEIGLKLIDRTTREVQLT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCEEEEE
DVGGNLVSSVSRLLTDLDDALREIREIGEQRRGRVVVAASPTVACRLMPRVVAACGQQFP
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCC
YVALGLRDDVQSDVVRKVKSGEVDFGVIIGPFAADDLLSESLMTDSFCVVCRDDNPLAAQ
EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHH
ERVAWTDLEGQQLVMLDYASGSRPIIDAVMQEYGVSATVVQELGHSATVFGLVEAGVGVS
HCCEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHCCCHH
VLPWLALPLPAGASLVARPLVPRAERTVELVRRRDRSLSPAAEAVWGLIRQLPGRAEDLA
HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]