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The map label for this gene is cfxR [H]

Identifier: 91782866

GI number: 91782866

Start: 1653007

End: 1653978

Strand: Direct

Name: cfxR [H]

Synonym: Bxe_A2957

Alternate gene names: 91782866

Gene position: 1653007-1653978 (Clockwise)

Preceding gene: 91782861

Following gene: 91782868

Centisome position: 33.76

GC content: 63.68

Gene sequence:

>972_bases
ATGTTAAAAGCCGCTACGTTTCGTCAGTTGAAGGCCTTGCATACGGTGGCGAAGCTCGGCAGCGTGTCGCGCGCGGCCGA
AGAATTGCGGCTCACGCAGCCGGCTGTTTCGCTACAGGTGCGTTTGCTGGAAGAGGCTGCGGGTGCGCCGCTATTGCAGC
GCGTGGGACGTGGCGTGCAGTTGACCGCGGCCGGTGAGATTCTCGCCCGCTATGCGCTGGAAATCCTCGACCTGTGGAAC
GGCGCGGCGGACGATCTGGCCGCGTTGCACGGCGAGCAGGGCGGCACGCTGCGCATCGGCGCGATCACCACGGCCGAGTA
CCTGATCCCGCCGTTTCTCGTGCGTTTCACCGAATTGCGTCCGCAGGTGAAGGTGCAGTTCAAGGTCGGCAATCGCGCCG
ACATCATCCGTATGCTGGCTACGCATGAAATCGATCTCGCGGTAATGGGCAGCGCGCCGCGCGAATTGCGCACGGTGGCG
ACCGCGTTCGCCAAACATCCGATGGCGTTCGTCGCCTCGCCCGCGCATGCGCTGATGAAGAAAAAGCGCCTGTCGCTCGA
CGATCTGCAAAGCGCCAATCTGTTCGTGCGGGAGCGCGGTTCCGGCACGCGCTCCACCGTCGAGAATCTGTTTCGCCTCG
CGGGCCTCAAGCTTCATATCGGCTCCGAACTGTCGAGCAACGAGGCGATCAAGCAGTTGGTCGAGGCCGGCCTCGGCATC
GCGTTTCTGTCGCTGCACGCATGTTCGCTGGAGTTTCAGGCAGGCCTGCTCGCGTTGCTGCCGCTGCCCGCCAATCCGAT
CGAACGCGACTGGTATGTGATGCATGTATCGGATAAACGACTGCCGCACGTGGCCAGTCTGTTCCGCGATTTTCTGATCG
AGCACGGCATGTCCGGCGCGGTGCCGGTGCCGTTGCCGACTGTCGCGGCGGCAAGGAAGCGCCGCCAGGCGCGTCAGGCA
GGTGGTGCTTAA

Upstream 100 bases:

>100_bases
CGCTACCGAAGATTCCCCGGCTCATCTGTCAGGCCAGTATAAAATCGGCAAAAACCGCAGCACAATTTAATGTTTATGCA
GAATATATAGGTTTTCACTT

Downstream 100 bases:

>100_bases
GCCGTGTGAAAGGCGCGTGAGAAGCGAGTGAGAAGCGCGTGAATTCTCGCTATTCGCTTCGACGTTTGTATTCACGCTGC
GTCATTACGAGGCGCCAGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: RuBisCO operon transcriptional regulator [H]

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MLKAATFRQLKALHTVAKLGSVSRAAEELRLTQPAVSLQVRLLEEAAGAPLLQRVGRGVQLTAAGEILARYALEILDLWN
GAADDLAALHGEQGGTLRIGAITTAEYLIPPFLVRFTELRPQVKVQFKVGNRADIIRMLATHEIDLAVMGSAPRELRTVA
TAFAKHPMAFVASPAHALMKKKRLSLDDLQSANLFVRERGSGTRSTVENLFRLAGLKLHIGSELSSNEAIKQLVEAGLGI
AFLSLHACSLEFQAGLLALLPLPANPIERDWYVMHVSDKRLPHVASLFRDFLIEHGMSGAVPVPLPTVAAARKRRQARQA
GGA

Sequences:

>Translated_323_residues
MLKAATFRQLKALHTVAKLGSVSRAAEELRLTQPAVSLQVRLLEEAAGAPLLQRVGRGVQLTAAGEILARYALEILDLWN
GAADDLAALHGEQGGTLRIGAITTAEYLIPPFLVRFTELRPQVKVQFKVGNRADIIRMLATHEIDLAVMGSAPRELRTVA
TAFAKHPMAFVASPAHALMKKKRLSLDDLQSANLFVRERGSGTRSTVENLFRLAGLKLHIGSELSSNEAIKQLVEAGLGI
AFLSLHACSLEFQAGLLALLPLPANPIERDWYVMHVSDKRLPHVASLFRDFLIEHGMSGAVPVPLPTVAAARKRRQARQA
GGA
>Mature_323_residues
MLKAATFRQLKALHTVAKLGSVSRAAEELRLTQPAVSLQVRLLEEAAGAPLLQRVGRGVQLTAAGEILARYALEILDLWN
GAADDLAALHGEQGGTLRIGAITTAEYLIPPFLVRFTELRPQVKVQFKVGNRADIIRMLATHEIDLAVMGSAPRELRTVA
TAFAKHPMAFVASPAHALMKKKRLSLDDLQSANLFVRERGSGTRSTVENLFRLAGLKLHIGSELSSNEAIKQLVEAGLGI
AFLSLHACSLEFQAGLLALLPLPANPIERDWYVMHVSDKRLPHVASLFRDFLIEHGMSGAVPVPLPTVAAARKRRQARQA
GGA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (cfxLS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=287, Percent_Identity=29.9651567944251, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI157672245, Length=231, Percent_Identity=30.3030303030303, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081904, Length=275, Percent_Identity=28.7272727272727, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787530, Length=231, Percent_Identity=29.004329004329, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=29.4915254237288, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787601, Length=141, Percent_Identity=34.0425531914894, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI145693105, Length=235, Percent_Identity=25.9574468085106, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=26.1904761904762, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787879, Length=241, Percent_Identity=28.2157676348548, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082132, Length=259, Percent_Identity=25.8687258687259, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1790208, Length=241, Percent_Identity=27.3858921161826, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788297, Length=252, Percent_Identity=27.3809523809524, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790399, Length=240, Percent_Identity=25, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790262, Length=239, Percent_Identity=29.2887029288703, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994962, Length=149, Percent_Identity=31.5436241610738, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788626, Length=257, Percent_Identity=29.1828793774319, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789204, Length=251, Percent_Identity=25.4980079681275, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1789440, Length=241, Percent_Identity=25.7261410788382, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34994; Mature: 34994

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKAATFRQLKALHTVAKLGSVSRAAEELRLTQPAVSLQVRLLEEAAGAPLLQRVGRGVQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCEE
LTAAGEILARYALEILDLWNGAADDLAALHGEQGGTLRIGAITTAEYLIPPFLVRFTELR
EEHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHCC
PQVKVQFKVGNRADIIRMLATHEIDLAVMGSAPRELRTVATAFAKHPMAFVASPAHALMK
CCEEEEEEECCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCHHHHCCHHHHHHH
KKRLSLDDLQSANLFVRERGSGTRSTVENLFRLAGLKLHIGSELSSNEAIKQLVEAGLGI
HHCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCCCH
AFLSLHACSLEFQAGLLALLPLPANPIERDWYVMHVSDKRLPHVASLFRDFLIEHGMSGA
HHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCC
VPVPLPTVAAARKRRQARQAGGA
CCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLKAATFRQLKALHTVAKLGSVSRAAEELRLTQPAVSLQVRLLEEAAGAPLLQRVGRGVQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCEE
LTAAGEILARYALEILDLWNGAADDLAALHGEQGGTLRIGAITTAEYLIPPFLVRFTELR
EEHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHCC
PQVKVQFKVGNRADIIRMLATHEIDLAVMGSAPRELRTVATAFAKHPMAFVASPAHALMK
CCEEEEEEECCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCHHHHCCHHHHHHH
KKRLSLDDLQSANLFVRERGSGTRSTVENLFRLAGLKLHIGSELSSNEAIKQLVEAGLGI
HHCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCCCH
AFLSLHACSLEFQAGLLALLPLPANPIERDWYVMHVSDKRLPHVASLFRDFLIEHGMSGA
HHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCC
VPVPLPTVAAARKRRQARQAGGA
CCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1779759 [H]