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The map label for this gene is ltrA [H]

Identifier: 91782682

GI number: 91782682

Start: 1462378

End: 1463388

Strand: Direct

Name: ltrA [H]

Synonym: Bxe_A3143

Alternate gene names: 91782682

Gene position: 1462378-1463388 (Clockwise)

Preceding gene: 91782677

Following gene: 91782693

Centisome position: 29.87

GC content: 64.69

Gene sequence:

>1011_bases
TTGTTCTATTACTGGAACGATGAGATGAAGATCGATTCACACAATCTGAATGACCTGATGTATTTTTCGCAGGTCGTCGA
ACATGGCGGTTTTTCGGCCGCCGAACGCGTGCTGGGCATTTCCAAGTCGCGACTGTCGCGCCGCCTGACCGAGCTGGAAG
CGTCGCTCGGCGTGCGTCTGCTGCAGCGGTCCACGCGCAAGCTGGCGCTGACCGAAGCCGGGCAGCTGTTCTATCAGCAT
TGCCAGGCGATGCTGAGCGAGGCGCAGGCGGCCGTCAACGTCGTTCAGCAACTGCGCTCGTCGCCGCGCGGCACGGTGCG
CGTCAGCGTGCCGGTCACGATTTCGCAGACCATCCTGTCGCAGATCCTGCCCGAATTCATGCATCGCTACCCCGAGGTGC
GCGTCGTGATGCGGGTGACGAACCGTGTGATCGATCTGTTCGAGGATTCGGTCGACGTCGCGCTGCGGGTGCGTTCCGAT
CCGCCGGAAAACGCCAACATCGTGGTGCGGCCGCTATGGCGCACGCAGCAGATGCTGGTCGGCGCGCCGAGCCTGTTGCA
GCAGAATGCGCCGCCGTTGCTGCCGGCCGATCTGAACCGCTTCGAAACGCTCGACGTGCCGACCGGCGACGGTCGCCACG
TCTACAACCTGATCGCACCCGACGGCACGCGGCACGCGCATGAGCACGAGCCGCGCCTCGTGACCGCCGATCTGATGACG
ATCCGTGAAGCGGTGCTCGCCGGCGTGGGTATCGCCGCGCTGCCGGAGATGATGTACGGCGCCGCGTTGCGAGCCGGGCA
ATTGTCGCCGGTCATGCCGGGCTGGACATTCCCGACGCCGCAGTTGTACGCCGTATTCGTGTCGCGTCAGGGGATGGTGC
CGGCCGTGCGCGCCTTTGTCGATTATCTGGTCGAGATGCTCGATCCCGACAACGGTAAGCACATCGCGGGAGAGTGCCCC
GCGCGCGAGGAAAAGGCCGCTGCGCAGCCGGCGCTGGCGATTGCGTCATAG

Upstream 100 bases:

>100_bases
ATCAAAGTCACCTCAAAAAAGGGGGAATAGCGTTATTTTTGAAACATGGGGCTATTATAGGGACCGTTTTCCGGGGTGCC
AGCCGCCCTCACGCAATGGA

Downstream 100 bases:

>100_bases
CACTTCTCATGCGCCACAACATCGCTTTTAGCATTTAAGCGCGGCTTGTCATGAGTACTTTCAATGGCCGTTTGCTTGAA
TGCGCGCGCTGCCGGGCCTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MFYYWNDEMKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTEAGQLFYQH
CQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSQILPEFMHRYPEVRVVMRVTNRVIDLFEDSVDVALRVRSD
PPENANIVVRPLWRTQQMLVGAPSLLQQNAPPLLPADLNRFETLDVPTGDGRHVYNLIAPDGTRHAHEHEPRLVTADLMT
IREAVLAGVGIAALPEMMYGAALRAGQLSPVMPGWTFPTPQLYAVFVSRQGMVPAVRAFVDYLVEMLDPDNGKHIAGECP
AREEKAAAQPALAIAS

Sequences:

>Translated_336_residues
MFYYWNDEMKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTEAGQLFYQH
CQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSQILPEFMHRYPEVRVVMRVTNRVIDLFEDSVDVALRVRSD
PPENANIVVRPLWRTQQMLVGAPSLLQQNAPPLLPADLNRFETLDVPTGDGRHVYNLIAPDGTRHAHEHEPRLVTADLMT
IREAVLAGVGIAALPEMMYGAALRAGQLSPVMPGWTFPTPQLYAVFVSRQGMVPAVRAFVDYLVEMLDPDNGKHIAGECP
AREEKAAAQPALAIAS
>Mature_336_residues
MFYYWNDEMKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTEAGQLFYQH
CQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSQILPEFMHRYPEVRVVMRVTNRVIDLFEDSVDVALRVRSD
PPENANIVVRPLWRTQQMLVGAPSLLQQNAPPLLPADLNRFETLDVPTGDGRHVYNLIAPDGTRHAHEHEPRLVTADLMT
IREAVLAGVGIAALPEMMYGAALRAGQLSPVMPGWTFPTPQLYAVFVSRQGMVPAVRAFVDYLVEMLDPDNGKHIAGECP
AREEKAAAQPALAIAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=30.4498269896194, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=31.5254237288136, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789440, Length=304, Percent_Identity=26.3157894736842, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=26.2458471760797, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=26.6666666666667, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787128, Length=295, Percent_Identity=26.7796610169492, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=25.3424657534247, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788481, Length=307, Percent_Identity=25.7328990228013, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=31.8840579710145, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787601, Length=172, Percent_Identity=23.8372093023256, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789173, Length=290, Percent_Identity=24.8275862068966, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788748, Length=125, Percent_Identity=33.6, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788297, Length=272, Percent_Identity=25.3676470588235, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787879, Length=307, Percent_Identity=28.0130293159609, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790399, Length=123, Percent_Identity=27.6422764227642, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1789506, Length=169, Percent_Identity=24.2603550295858, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI87082132, Length=304, Percent_Identity=22.6973684210526, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37314; Mature: 37314

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYYWNDEMKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRL
CEEEECCCEEECCCCCHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LQRSTRKLALTEAGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH
QILPEFMHRYPEVRVVMRVTNRVIDLFEDSVDVALRVRSDPPENANIVVRPLWRTQQMLV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCEEEEECHHHHHHHH
GAPSLLQQNAPPLLPADLNRFETLDVPTGDGRHVYNLIAPDGTRHAHEHEPRLVTADLMT
CCHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHH
IREAVLAGVGIAALPEMMYGAALRAGQLSPVMPGWTFPTPQLYAVFVSRQGMVPAVRAFV
HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEEEEECCCCCHHHHHHHH
DYLVEMLDPDNGKHIAGECPAREEKAAAQPALAIAS
HHHHHHHCCCCCCEECCCCCCCHHHHHCCCCCCCCC
>Mature Secondary Structure
MFYYWNDEMKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRL
CEEEECCCEEECCCCCHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LQRSTRKLALTEAGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH
QILPEFMHRYPEVRVVMRVTNRVIDLFEDSVDVALRVRSDPPENANIVVRPLWRTQQMLV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCEEEEECHHHHHHHH
GAPSLLQQNAPPLLPADLNRFETLDVPTGDGRHVYNLIAPDGTRHAHEHEPRLVTADLMT
CCHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHH
IREAVLAGVGIAALPEMMYGAALRAGQLSPVMPGWTFPTPQLYAVFVSRQGMVPAVRAFV
HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEEEEECCCCCHHHHHHHH
DYLVEMLDPDNGKHIAGECPAREEKAAAQPALAIAS
HHHHHHHCCCCCCEECCCCCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]