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The map label for this gene is yodF [H]

Identifier: 91782508

GI number: 91782508

Start: 1266687

End: 1268237

Strand: Direct

Name: yodF [H]

Synonym: Bxe_A3321

Alternate gene names: 91782508

Gene position: 1266687-1268237 (Clockwise)

Preceding gene: 91782507

Following gene: 91782509

Centisome position: 25.87

GC content: 64.02

Gene sequence:

>1551_bases
ATGAACGCCACAGCAACCTTCGTCTTCGTTCTGTTTTTCGTCGGCGTCACGATTCTCGGCTTTATCGCGGCCCACTGGCG
GCGCGGCGATCTCGCGCATCTGGAAGAGTGGGGCCTCGGTGGCCGGCGCTTCGGCACCATCGTCACCTGGTTCCTGCTGG
GCGGCGACCTGTACACCGCGTACACCTTCATTGCCGTGCCGGCGCTGGTATTCGGTGCGGGCGCAACCGGTTTCTTCGCG
CTGCCGTACACCATCCTGATCTATCCGTTTGCGTTCGTCGTGTTCCCGAAACTGTGGAGCATCGCCAAACGTCAGGGCTA
CGTGACATCGGCGGACTTCGTGTCGGCGCGCTATGGCAGCCGTATGCTCGCTCTGGCGATCGCCGTGACCGGCATCGTCG
CGACCATGCCGTATATCGCGCTGCAACTGGTCGGGATCGAAGTGGTGATCGGCGCGCTCGGTTTCGACACCAAGGGCTTT
GTCGGCGATCTGCCGCTGATCATCGCATTCGCGATCCTCGCGGCGTACACGTACACCTCGGGTCTGCGCGCGCCGGCCAT
GATCGCGGTGGTCAAGGACATCCTCATCTACATCACGATTTTCGCCGCGATCATTGTGATTCCGCCGCAACTGGGCGGCT
TCGGCCACATCTTCAGCGTGGTGCCGCCGGCCAAGCTGCTGCTGAAGGCGCCGGACGTGTCGAGCCTGAACGGCTACAGC
GCGTACGCGACACTCGCGGTGGGCTCGGCGCTCGCACTGTTCCTGTATCCGCACTCGATCACGGCGGTGCTGTCGTCGAA
GTCGGGCAACACCATTCGCCGCAACATGGCGATGCTGCCGGCTTACTCGCTGGTGCTCGGCCTGCTCGCGCTGCTCGGCT
TCATGGCTTTGGCCTCGGGCGTGAAGGACATGCCGGAGTTCGCGCCGTACTTCAAGGCGTTCGGCCCGAACTTCGCGGTG
CCGGCGCTGTTCCTGCATTACTTCCCGTCGTGGTTCGTCGGCGTGGCGTTCGCGGCGATCGGCATTGGCGCGCTGGTGCC
GGCGGCGATCATGTCGATCGCGGCCGCGAACCTGTACACGCGCAACATCCACAAGGAGTTCGTCAACCGCAACATGACGC
ACGAGCAGGAGACCAATGTCGCGAAGCTGGTCTCGCTGATCGTCAAGGTCGGCGCGGTGGCGTTCATTCTCGGCCTGCCG
CTTACGTACGCGATCCAGTTGCAGCTGCTCGGCGGTATCTGGATCATCCAGACGCTGCCGGCCATCGTGCTGGGTTTGTA
CACGCGCGTGCTCGACTATCGCGGCCTGCTGGCCGGCTGGGCGGTCGGCATCGCAACCGGCACGTGGATGGCGATTTCGC
TGAAGCTGGCCGGCTCGATCTTCACGATCCATCTGTTCGGCATGGCGATTCCGGGTTATGCGGCGGTATGGTCGCTGATC
GTGAATCTGGTGGTGGCGGTGGTGGTGAGCCTGCTGGTGCGCGCGGCCGGCATGCAGCGCGCGGAAGACCGCACCCGCCC
GGAAGACTATCTGGACGTGGTGGAAGGCTAG

Upstream 100 bases:

>100_bases
ATCAGCTCCTGTGGGTGCTGATCAGCGCGGTCATCACGGCGCTCGTGTACTTCAAGACCAAGACGCGCTCCAATGGCCGT
CCGCAAGGGGGCGCACGATA

Downstream 100 bases:

>100_bases
ACACACCCGCCTTGCCTCGTCCCGCCTCAACGGGTTCGAGAGCCTGAAAACCGCAGCGCCCGCAGACGAAAGTTTGCGGG
CGTTTGTCTTGATAGCGCAC

Product: Na+/solute symporter

Products: Na (I) [Cytoplasm]; pantothenate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MNATATFVFVLFFVGVTILGFIAAHWRRGDLAHLEEWGLGGRRFGTIVTWFLLGGDLYTAYTFIAVPALVFGAGATGFFA
LPYTILIYPFAFVVFPKLWSIAKRQGYVTSADFVSARYGSRMLALAIAVTGIVATMPYIALQLVGIEVVIGALGFDTKGF
VGDLPLIIAFAILAAYTYTSGLRAPAMIAVVKDILIYITIFAAIIVIPPQLGGFGHIFSVVPPAKLLLKAPDVSSLNGYS
AYATLAVGSALALFLYPHSITAVLSSKSGNTIRRNMAMLPAYSLVLGLLALLGFMALASGVKDMPEFAPYFKAFGPNFAV
PALFLHYFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYTRNIHKEFVNRNMTHEQETNVAKLVSLIVKVGAVAFILGLP
LTYAIQLQLLGGIWIIQTLPAIVLGLYTRVLDYRGLLAGWAVGIATGTWMAISLKLAGSIFTIHLFGMAIPGYAAVWSLI
VNLVVAVVVSLLVRAAGMQRAEDRTRPEDYLDVVEG

Sequences:

>Translated_516_residues
MNATATFVFVLFFVGVTILGFIAAHWRRGDLAHLEEWGLGGRRFGTIVTWFLLGGDLYTAYTFIAVPALVFGAGATGFFA
LPYTILIYPFAFVVFPKLWSIAKRQGYVTSADFVSARYGSRMLALAIAVTGIVATMPYIALQLVGIEVVIGALGFDTKGF
VGDLPLIIAFAILAAYTYTSGLRAPAMIAVVKDILIYITIFAAIIVIPPQLGGFGHIFSVVPPAKLLLKAPDVSSLNGYS
AYATLAVGSALALFLYPHSITAVLSSKSGNTIRRNMAMLPAYSLVLGLLALLGFMALASGVKDMPEFAPYFKAFGPNFAV
PALFLHYFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYTRNIHKEFVNRNMTHEQETNVAKLVSLIVKVGAVAFILGLP
LTYAIQLQLLGGIWIIQTLPAIVLGLYTRVLDYRGLLAGWAVGIATGTWMAISLKLAGSIFTIHLFGMAIPGYAAVWSLI
VNLVVAVVVSLLVRAAGMQRAEDRTRPEDYLDVVEG
>Mature_516_residues
MNATATFVFVLFFVGVTILGFIAAHWRRGDLAHLEEWGLGGRRFGTIVTWFLLGGDLYTAYTFIAVPALVFGAGATGFFA
LPYTILIYPFAFVVFPKLWSIAKRQGYVTSADFVSARYGSRMLALAIAVTGIVATMPYIALQLVGIEVVIGALGFDTKGF
VGDLPLIIAFAILAAYTYTSGLRAPAMIAVVKDILIYITIFAAIIVIPPQLGGFGHIFSVVPPAKLLLKAPDVSSLNGYS
AYATLAVGSALALFLYPHSITAVLSSKSGNTIRRNMAMLPAYSLVLGLLALLGFMALASGVKDMPEFAPYFKAFGPNFAV
PALFLHYFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYTRNIHKEFVNRNMTHEQETNVAKLVSLIVKVGAVAFILGLP
LTYAIQLQLLGGIWIIQTLPAIVLGLYTRVLDYRGLLAGWAVGIATGTWMAISLKLAGSIFTIHLFGMAIPGYAAVWSLI
VNLVVAVVVSLLVRAAGMQRAEDRTRPEDYLDVVEG

Specific function: Catalyzes The Sodium-Dependent Uptake Of Extracellular Pantothenate. [C]

COG id: COG0591

COG function: function code ER; Na+/proline symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001734 [H]

Pfam domain/function: PF00474 SSF [H]

EC number: NA

Molecular weight: Translated: 55265; Mature: 55265

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNATATFVFVLFFVGVTILGFIAAHWRRGDLAHLEEWGLGGRRFGTIVTWFLLGGDLYTA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH
YTFIAVPALVFGAGATGFFALPYTILIYPFAFVVFPKLWSIAKRQGYVTSADFVSARYGS
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCH
RMLALAIAVTGIVATMPYIALQLVGIEVVIGALGFDTKGFVGDLPLIIAFAILAAYTYTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC
GLRAPAMIAVVKDILIYITIFAAIIVIPPQLGGFGHIFSVVPPAKLLLKAPDVSSLNGYS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHEECCCCCCCCCCH
AYATLAVGSALALFLYPHSITAVLSSKSGNTIRRNMAMLPAYSLVLGLLALLGFMALASG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKDMPEFAPYFKAFGPNFAVPALFLHYFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYT
HHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNIHKEFVNRNMTHEQETNVAKLVSLIVKVGAVAFILGLPLTYAIQLQLLGGIWIIQTLP
HHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
AIVLGLYTRVLDYRGLLAGWAVGIATGTWMAISLKLAGSIFTIHLFGMAIPGYAAVWSLI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEHHCHHHHHHHHHHHCCHHHHHHHHH
VNLVVAVVVSLLVRAAGMQRAEDRTRPEDYLDVVEG
HHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; pantothenate [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + pantothenate [Periplasm] = Na (I) [Cytoplasm] + pantothenate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]