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The map label for this gene is ydcI [H]

Identifier: 91782391

GI number: 91782391

Start: 1131587

End: 1132507

Strand: Reverse

Name: ydcI [H]

Synonym: Bxe_A3439

Alternate gene names: 91782391

Gene position: 1132507-1131587 (Counterclockwise)

Preceding gene: 91782393

Following gene: 91782388

Centisome position: 23.13

GC content: 65.04

Gene sequence:

>921_bases
ATGTTCTCCCAACTCACCGATCTCGACCTGCGGCTGATCCGCGTGTTTCTCGCCATTGTCGACGCGGGCGGCGTCTCGCC
AGCCCAGGCGACCCTCAACGTCGGCCAGTCCACCATTAGCACGCAACTCGCCACGCTGGAAACGCGGCTCGGCTACCGGC
TGTGCGAGCGTGGCCGCGGCGGCTTCAGTCTGACCGCGCGCGGCGAACAGTTCATCGACGCCGCCCGCGCGCTGCTGTCG
GCCGTCGACACCTTCGGCATGCAGGCGCGCAACGTGGGCCGCAAGCTGGTCGGCACGCTCGATATCGGCATGATCGGCCA
CACGCCGGTGTCGGCGAGCGCGCGTATCAGCGACGCGATCGGCCGGTTCCGGGCACGCGATCAGTCGGTGCGGTTTTCGG
TTCTGGTGCGCTCTCCCGGCGAGCTGGAAGAACTGCTGCTCAATGGGCGGATTCAGATCGGCATCGGCTATTTCTGGCAC
CGCGTGCCGTCGCTCGAATACACCGAGATGTTCGCGGAAGACCAGTTCGCTTATTGCGCGAAAGGCCATCCGCTGTTCGC
GCAAGGCGGCGAGGTGACGGCCGCCGAAGCCGCGCAGCATGAATGGGCGTGGCGCAGTTATCCGCTGCCCGAAGCCGGGA
GTTCGACCAGGCCGCAAAATGTCACCGCCGTCGCGGACAACATGGAAGCGGTCGCGATGCTGGTGCTCTCCGGACATCAT
CTCGGCTACTTGCCGGGCCATTTCGCGGCGCCGTTCGTCAAGCAGGGACTGCTCGTCGCGCTGAATCCGGCGCAGATGCG
CTACCGCGTCGCGTTTCATATGGTCACGCGGGCGCGGCAGCATCGTACGGATATCGTCGAAGCGTTTATCGACGATATGA
AGGCCGCGCATCCGGTGCAGGTTTTGCAGATGGATGAGTAG

Upstream 100 bases:

>100_bases
GCACCTTGCCGGGCGAATCTCGATTCTTGAGCAGTTTCCCAGAACTTAAAATACCTACGGCACAAACTTCACATTGATTC
CCGGCGATGTATCCTGACCC

Downstream 100 bases:

>100_bases
CGGCCAGGCCCAGCGGCCTGCGATGAAAAAAGCCGCGCACGAAGCGCGGCTTTCTGCCCATCACCTGTCGCCCGCAGGCG
GCTTAGCCGTTGATCACGTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MFSQLTDLDLRLIRVFLAIVDAGGVSPAQATLNVGQSTISTQLATLETRLGYRLCERGRGGFSLTARGEQFIDAARALLS
AVDTFGMQARNVGRKLVGTLDIGMIGHTPVSASARISDAIGRFRARDQSVRFSVLVRSPGELEELLLNGRIQIGIGYFWH
RVPSLEYTEMFAEDQFAYCAKGHPLFAQGGEVTAAEAAQHEWAWRSYPLPEAGSSTRPQNVTAVADNMEAVAMLVLSGHH
LGYLPGHFAAPFVKQGLLVALNPAQMRYRVAFHMVTRARQHRTDIVEAFIDDMKAAHPVQVLQMDE

Sequences:

>Translated_306_residues
MFSQLTDLDLRLIRVFLAIVDAGGVSPAQATLNVGQSTISTQLATLETRLGYRLCERGRGGFSLTARGEQFIDAARALLS
AVDTFGMQARNVGRKLVGTLDIGMIGHTPVSASARISDAIGRFRARDQSVRFSVLVRSPGELEELLLNGRIQIGIGYFWH
RVPSLEYTEMFAEDQFAYCAKGHPLFAQGGEVTAAEAAQHEWAWRSYPLPEAGSSTRPQNVTAVADNMEAVAMLVLSGHH
LGYLPGHFAAPFVKQGLLVALNPAQMRYRVAFHMVTRARQHRTDIVEAFIDDMKAAHPVQVLQMDE
>Mature_306_residues
MFSQLTDLDLRLIRVFLAIVDAGGVSPAQATLNVGQSTISTQLATLETRLGYRLCERGRGGFSLTARGEQFIDAARALLS
AVDTFGMQARNVGRKLVGTLDIGMIGHTPVSASARISDAIGRFRARDQSVRFSVLVRSPGELEELLLNGRIQIGIGYFWH
RVPSLEYTEMFAEDQFAYCAKGHPLFAQGGEVTAAEAAQHEWAWRSYPLPEAGSSTRPQNVTAVADNMEAVAMLVLSGHH
LGYLPGHFAAPFVKQGLLVALNPAQMRYRVAFHMVTRARQHRTDIVEAFIDDMKAAHPVQVLQMDE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=191, Percent_Identity=32.4607329842932, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787879, Length=198, Percent_Identity=29.2929292929293, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788887, Length=254, Percent_Identity=25.1968503937008, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789204, Length=178, Percent_Identity=27.5280898876405, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787601, Length=296, Percent_Identity=23.6486486486486, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788297, Length=177, Percent_Identity=27.1186440677966, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33580; Mature: 33580

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSQLTDLDLRLIRVFLAIVDAGGVSPAQATLNVGQSTISTQLATLETRLGYRLCERGRG
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
GFSLTARGEQFIDAARALLSAVDTFGMQARNVGRKLVGTLDIGMIGHTPVSASARISDAI
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECEECCCCCCCHHHHHHHH
GRFRARDQSVRFSVLVRSPGELEELLLNGRIQIGIGYFWHRVPSLEYTEMFAEDQFAYCA
HHHHCCCCCEEEEEEECCCCHHHHHHHCCEEEEEEHHHHHHCCCCHHHHHHHCCCHHHHC
KGHPLFAQGGEVTAAEAAQHEWAWRSYPLPEAGSSTRPQNVTAVADNMEAVAMLVLSGHH
CCCCEEECCCCEEHHHHHHHCCCCCCCCCCCCCCCCCCCCEEHHHCCHHHHHHHHHCCCC
LGYLPGHFAAPFVKQGLLVALNPAQMRYRVAFHMVTRARQHRTDIVEAFIDDMKAAHPVQ
CCCCCCHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
VLQMDE
EEEECC
>Mature Secondary Structure
MFSQLTDLDLRLIRVFLAIVDAGGVSPAQATLNVGQSTISTQLATLETRLGYRLCERGRG
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
GFSLTARGEQFIDAARALLSAVDTFGMQARNVGRKLVGTLDIGMIGHTPVSASARISDAI
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECEECCCCCCCHHHHHHHH
GRFRARDQSVRFSVLVRSPGELEELLLNGRIQIGIGYFWHRVPSLEYTEMFAEDQFAYCA
HHHHCCCCCEEEEEEECCCCHHHHHHHCCEEEEEEHHHHHHCCCCHHHHHHHCCCHHHHC
KGHPLFAQGGEVTAAEAAQHEWAWRSYPLPEAGSSTRPQNVTAVADNMEAVAMLVLSGHH
CCCCEEECCCCEEHHHHHHHCCCCCCCCCCCCCCCCCCCCEEHHHCCHHHHHHHHHCCCC
LGYLPGHFAAPFVKQGLLVALNPAQMRYRVAFHMVTRARQHRTDIVEAFIDDMKAAHPVQ
CCCCCCHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
VLQMDE
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]