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The map label for this gene is yybE [H]

Identifier: 91782364

GI number: 91782364

Start: 1101236

End: 1102162

Strand: Reverse

Name: yybE [H]

Synonym: Bxe_A3467

Alternate gene names: 91782364

Gene position: 1102162-1101236 (Counterclockwise)

Preceding gene: 91782369

Following gene: 91782363

Centisome position: 22.51

GC content: 63.65

Gene sequence:

>927_bases
ATGGAGAGTCACCCCCTGCGCTACTCGCTGCGCCAGTTGCGTTACTTCGTGATCACTGCGGAAGCGCTGTCTTTCACGGC
CGCCGCGAAGCGTCTGCACATCTCGCAGCCGTCGATCTCGACGGCGCTTGCGGACTTGGAAGTGTCGTTCGGCGTGCAAC
TCTTCATACGGCATCACGCGAGCGGCCTCTCGCTCACGCAAGCGGGGCGCGATCTGCTCGGGCAAGCGCGCAATCTGCTG
AAGATCGCGGAAGAACTACAGATGGCCGCCAAGGAAATGGACGGCGGCATGACGGGCGCCATCGCGCTCGGCTGCCTCGT
CTCGCTCGCGCCGCCGCTCATGCCGAGGCTCATCAGCCGCTTCACGGCCGAACACGCGGGCATCTCGTTCCGTACCGTGG
AGGCGCACCAGGATGGGCTGTTGCGCGGCCTGCACGACGGCTCGCTCGACATCGCCCTCACCTACAGCCTCGATTTGACC
GAGGATATCGCCTTCACGCCACTGCTTTCGCTGCCGCCCTACGCGATCCTGCCGAGAACGCACCGCCTCGCGCGCGCCCG
CAAGGTATCGCTCGCAGACCTTCTGCCCGAGCCGTACGTGATGCTCGACCTGCCGCACAGCCGCGAGTATTTCGCCGCGC
TCTTCGATGCGGTGGGCAACCGCCCCGTGCCGGCGTTCCGTTCGTCGCAGCCAGAAGTTGTGCGCGGCATGGTGGCCAAC
GGTCTCGGCTATAGCCTGCTCAACTTCCCGCTCAAATCGAATCGCACCGTGGATGGCGAAGAGTTCGTCATTAAACGCTT
CAAAGACAACGTCAACGCGACGATGCTCGGCATCGCACAATCGCGCACGATGAAACCGCGCCAGGTGGTGCATCGTTTCG
CGTCGTTCTGCGAGACCTATATTCGCCGACTGCACCTCGACGATTGA

Upstream 100 bases:

>100_bases
TATATTTAAAAAATGCATAGCATCGGATTTTCCTATGCATGCCTTTTTGACCGCCCCACAATCCCATCCATTGAAGGCCT
CGAACAGGGAGCATAAGTCG

Downstream 100 bases:

>100_bases
TGGGCAAAGCATGTTCGCCCGCTTTCAGCCCGGCGCACGCTGCATAGGTAAAAACTTTGCTTTGTATCTGAAAACAATAT
TTTGGCTTGCAATTTGGCTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MESHPLRYSLRQLRYFVITAEALSFTAAAKRLHISQPSISTALADLEVSFGVQLFIRHHASGLSLTQAGRDLLGQARNLL
KIAEELQMAAKEMDGGMTGAIALGCLVSLAPPLMPRLISRFTAEHAGISFRTVEAHQDGLLRGLHDGSLDIALTYSLDLT
EDIAFTPLLSLPPYAILPRTHRLARARKVSLADLLPEPYVMLDLPHSREYFAALFDAVGNRPVPAFRSSQPEVVRGMVAN
GLGYSLLNFPLKSNRTVDGEEFVIKRFKDNVNATMLGIAQSRTMKPRQVVHRFASFCETYIRRLHLDD

Sequences:

>Translated_308_residues
MESHPLRYSLRQLRYFVITAEALSFTAAAKRLHISQPSISTALADLEVSFGVQLFIRHHASGLSLTQAGRDLLGQARNLL
KIAEELQMAAKEMDGGMTGAIALGCLVSLAPPLMPRLISRFTAEHAGISFRTVEAHQDGLLRGLHDGSLDIALTYSLDLT
EDIAFTPLLSLPPYAILPRTHRLARARKVSLADLLPEPYVMLDLPHSREYFAALFDAVGNRPVPAFRSSQPEVVRGMVAN
GLGYSLLNFPLKSNRTVDGEEFVIKRFKDNVNATMLGIAQSRTMKPRQVVHRFASFCETYIRRLHLDD
>Mature_308_residues
MESHPLRYSLRQLRYFVITAEALSFTAAAKRLHISQPSISTALADLEVSFGVQLFIRHHASGLSLTQAGRDLLGQARNLL
KIAEELQMAAKEMDGGMTGAIALGCLVSLAPPLMPRLISRFTAEHAGISFRTVEAHQDGLLRGLHDGSLDIALTYSLDLT
EDIAFTPLLSLPPYAILPRTHRLARARKVSLADLLPEPYVMLDLPHSREYFAALFDAVGNRPVPAFRSSQPEVVRGMVAN
GLGYSLLNFPLKSNRTVDGEEFVIKRFKDNVNATMLGIAQSRTMKPRQVVHRFASFCETYIRRLHLDD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=251, Percent_Identity=31.4741035856574, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790399, Length=253, Percent_Identity=30.4347826086957, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI145693105, Length=245, Percent_Identity=26.9387755102041, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI2367136, Length=286, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788887, Length=285, Percent_Identity=29.1228070175439, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787601, Length=222, Percent_Identity=29.2792792792793, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787530, Length=244, Percent_Identity=25.8196721311475, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789204, Length=269, Percent_Identity=27.8810408921933, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=272, Percent_Identity=24.6323529411765, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788297, Length=96, Percent_Identity=36.4583333333333, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI157672245, Length=192, Percent_Identity=27.6041666666667, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1790208, Length=242, Percent_Identity=26.0330578512397, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34161; Mature: 34161

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESHPLRYSLRQLRYFVITAEALSFTAAAKRLHISQPSISTALADLEVSFGVQLFIRHHA
CCCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
SGLSLTQAGRDLLGQARNLLKIAEELQMAAKEMDGGMTGAIALGCLVSLAPPLMPRLISR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH
FTAEHAGISFRTVEAHQDGLLRGLHDGSLDIALTYSLDLTEDIAFTPLLSLPPYAILPRT
HHHHHCCCEEEEECCHHHHHHHCCCCCCEEEEEEEEECCCCCHHHCCHHCCCCCEECCCH
HRLARARKVSLADLLPEPYVMLDLPHSREYFAALFDAVGNRPVPAFRSSQPEVVRGMVAN
HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC
GLGYSLLNFPLKSNRTVDGEEFVIKRFKDNVNATMLGIAQSRTMKPRQVVHRFASFCETY
CCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEHHCCCCCHHHHHHHHHHHHHHH
IRRLHLDD
HHHHCCCC
>Mature Secondary Structure
MESHPLRYSLRQLRYFVITAEALSFTAAAKRLHISQPSISTALADLEVSFGVQLFIRHHA
CCCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
SGLSLTQAGRDLLGQARNLLKIAEELQMAAKEMDGGMTGAIALGCLVSLAPPLMPRLISR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH
FTAEHAGISFRTVEAHQDGLLRGLHDGSLDIALTYSLDLTEDIAFTPLLSLPPYAILPRT
HHHHHCCCEEEEECCHHHHHHHCCCCCCEEEEEEEEECCCCCHHHCCHHCCCCCEECCCH
HRLARARKVSLADLLPEPYVMLDLPHSREYFAALFDAVGNRPVPAFRSSQPEVVRGMVAN
HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC
GLGYSLLNFPLKSNRTVDGEEFVIKRFKDNVNATMLGIAQSRTMKPRQVVHRFASFCETY
CCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEHHCCCCCHHHHHHHHHHHHHHH
IRRLHLDD
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]