| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is metG
Identifier: 91782348
GI number: 91782348
Start: 1081529
End: 1083661
Strand: Reverse
Name: metG
Synonym: Bxe_A3483
Alternate gene names: 91782348
Gene position: 1083661-1081529 (Counterclockwise)
Preceding gene: 91782349
Following gene: 91782345
Centisome position: 22.13
GC content: 62.4
Gene sequence:
>2133_bases ATGTCAGCACCCGCAACCGACCTCTCCGCAGGCGCGCCGTCAGGCCGTCGCCAGATTCTCGTCACGTCGGCCCTTCCCTA TGCGAACGGGCAAATCCATATTGGCCATCTGGTCGAATATATCCAGACGGACATCTGGGTCCGGACGTTGCGAATGCACG GACACGAGGTCTACTACGTGGGCGCCGACGACACGCACGGCACGCCCGTCATGCTGCGCGCGGAGAAAGAAGGTCTCACG CCGAAGCAGCTGATCGACCGCGTCTGGCAGGAACACAAGCGCGACTTCGACAGCTTCGGGATTTCGTTCGACAATTACTA TTCGACCGACTCCGAAGAGAACCGCGTTCTCAGCGAAAACGTCTATCTGGCGCTAAAGGAAGCAGGCCTGATCGACGCGC GCGACATCGAACAGGCGTATGACCCAGTCAAGGAAATGTTCCTGCCGGATCGCTTCATCAAGGGCGAATGTCCGAAATGC GGCGCGAAAGACCAGTACGGCGACAGCTGCGAAGTGTGCGGTTCAACGTATCTGCCCACCGAGCTGATCAATCCGTACTC GGTCGTCTCGGGCGCCACGCCGGTTCGCAAGACCTCGACACACTATTTCTTCCGTCTCTCCGATCCGCGTTGCGAAAATT TCCTGCGCGCATGGGTGGGCGGTCTGGCGCAGCCCGAAGCCACCAACAAGATGCGCGAATGGCTCGGCGACGCCGGCGAA GCCAAGCTCGCCGACTGGGACATCTCGCGCGACGCGCCGTATTTCGGTTTCGAAATTCCGGGCGCGCCGGGCAAGTATTT CTATGTGTGGCTGGACGCGCCGGTCGGCTACTACGCGAGCTTCAAGAACCTCGCCGAAAAACGCGGCCTCGATTTCGACG CGTGGGTTCGCAAGGGTTCGAAGGCCGAGCAGTATCACTTCATCGGCAAGGACATTCTGTATTTCCACACGCTGTTCTGG CCGGCCATGCTCGAGTTTTCGGGCCACCGCACGCCGACCAACGTGTTCGCGCACGGTTTCCTGACCGTGGACGGCGCGAA GATGTCGAAGTCGCGCGGCACCTTCATCACCGCGCAGAGCGTGATCGAGACGGGCCTGAATCCGGAATGGCTGCGCTATT ACTTCGCGGCCAAGCTGAACAGCACGATGGAAGACCTCGACCTGAACCTCGACGACTTCCAGGCGCGCGTCAATAGCGAT CTGGTCGGCAAATACGTGAACATCGCGAGCCGCGCGGCCGGCTTCCTGATCAAGCGCTTCGACGGCCGCGTGCAGGACAG CGCGATGCAGCATCCGCTGCTCGCCTCGCTGCGCGCCGCCGTGCCGCAAATCGCCGCGAACTACGAAGCCCGCGAGTACA ACCGCGCGCTGCGCCAGACCATGGAACTGGCCGACGCGGTGAACGCATACGTCGACACCGCCAAGCCGTGGGATCAGGCC AAAGACCCGGCGAACGGCGTCGCGCTGCATGAAACGTGCAGCGTGAGCATCGAGGCGTTCCGCCTGCTGTCGCTGGCGCT GAAGCCAGTGCTGCCGAAGCTCGCCGAAGCGGTCGAAGGCTTCCTCGCCATCCAACCGCTGGTGTGGGCGGACGCCAACG TGCCGCTCAGTTCCACCCGGCCAATCAACGCGTACAAGCATCTGATGACACGCGTCGATCCGAAACAGATCGAAGCGCTG CTCGCCGCCAATCGCGACTCGCTGCAAGCCACGCCGGAAGCAGCCGCGCCGGCCGACGCCAAGGGCAAGTCGAAGGCAGC GAAAGCCGCCGCCGGCAAGGACGAAACACCCGGCATCATCTCGATCGACGACTTCGCGAAGATCGATTTGCGCATTGCGA AGATCGTCGACTGCAAGGCGGTGGAAGGTTCGGACAAGCTGCTGCAACTCACGCTCGACGTCGGCGAAGAGAAAACCCGC AACGTGTTTTCCGGTATCAAGTCGGCGTATCAGCCGGAGCAGCTGGTCGGCAAGCTGACGGTCATGGTCGCCAACCTCGC GCCGCGCAAGATGAAGTTCGGCCTGTCCGAAGGCATGGTGCTGGCCGCCTCCGCCACCGACGAGAAAGCCGAACCGGGCC TTTACGTGCTCGAACCGGACAGCGGCGCGAAGCCGGGCATGCGCGTGAAGTAA
Upstream 100 bases:
>100_bases CCGCAACGACTCGCGCCGCGCCCCACGCGGCCCGCCCCGCGCCGGGCGCCTGCCCTGCTAGAATCAACGTTTCGTCCCAC CGCAGGCTCCCACCATCCTT
Downstream 100 bases:
>100_bases AGCGCGCGGCGGCTTGCGCTGCAGGCGCGAATAAAAACGGCACGCTCTTAAAAGTCGTGCCGTTTTTTTTGCTGTGCCGT TTTCTGCCGCGCTTTTTTTG
Product: methionyl-tRNA synthetase
Products: NA
Alternate protein names: Methionine--tRNA ligase; MetRS
Number of amino acids: Translated: 710; Mature: 709
Protein sequence:
>710_residues MSAPATDLSAGAPSGRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYYVGADDTHGTPVMLRAEKEGLT PKQLIDRVWQEHKRDFDSFGISFDNYYSTDSEENRVLSENVYLALKEAGLIDARDIEQAYDPVKEMFLPDRFIKGECPKC GAKDQYGDSCEVCGSTYLPTELINPYSVVSGATPVRKTSTHYFFRLSDPRCENFLRAWVGGLAQPEATNKMREWLGDAGE AKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLAEKRGLDFDAWVRKGSKAEQYHFIGKDILYFHTLFW PAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSVIETGLNPEWLRYYFAAKLNSTMEDLDLNLDDFQARVNSD LVGKYVNIASRAAGFLIKRFDGRVQDSAMQHPLLASLRAAVPQIAANYEAREYNRALRQTMELADAVNAYVDTAKPWDQA KDPANGVALHETCSVSIEAFRLLSLALKPVLPKLAEAVEGFLAIQPLVWADANVPLSSTRPINAYKHLMTRVDPKQIEAL LAANRDSLQATPEAAAPADAKGKSKAAKAAAGKDETPGIISIDDFAKIDLRIAKIVDCKAVEGSDKLLQLTLDVGEEKTR NVFSGIKSAYQPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASATDEKAEPGLYVLEPDSGAKPGMRVK
Sequences:
>Translated_710_residues MSAPATDLSAGAPSGRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYYVGADDTHGTPVMLRAEKEGLT PKQLIDRVWQEHKRDFDSFGISFDNYYSTDSEENRVLSENVYLALKEAGLIDARDIEQAYDPVKEMFLPDRFIKGECPKC GAKDQYGDSCEVCGSTYLPTELINPYSVVSGATPVRKTSTHYFFRLSDPRCENFLRAWVGGLAQPEATNKMREWLGDAGE AKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLAEKRGLDFDAWVRKGSKAEQYHFIGKDILYFHTLFW PAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSVIETGLNPEWLRYYFAAKLNSTMEDLDLNLDDFQARVNSD LVGKYVNIASRAAGFLIKRFDGRVQDSAMQHPLLASLRAAVPQIAANYEAREYNRALRQTMELADAVNAYVDTAKPWDQA KDPANGVALHETCSVSIEAFRLLSLALKPVLPKLAEAVEGFLAIQPLVWADANVPLSSTRPINAYKHLMTRVDPKQIEAL LAANRDSLQATPEAAAPADAKGKSKAAKAAAGKDETPGIISIDDFAKIDLRIAKIVDCKAVEGSDKLLQLTLDVGEEKTR NVFSGIKSAYQPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASATDEKAEPGLYVLEPDSGAKPGMRVK >Mature_709_residues SAPATDLSAGAPSGRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYYVGADDTHGTPVMLRAEKEGLTP KQLIDRVWQEHKRDFDSFGISFDNYYSTDSEENRVLSENVYLALKEAGLIDARDIEQAYDPVKEMFLPDRFIKGECPKCG AKDQYGDSCEVCGSTYLPTELINPYSVVSGATPVRKTSTHYFFRLSDPRCENFLRAWVGGLAQPEATNKMREWLGDAGEA KLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLAEKRGLDFDAWVRKGSKAEQYHFIGKDILYFHTLFWP AMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSVIETGLNPEWLRYYFAAKLNSTMEDLDLNLDDFQARVNSDL VGKYVNIASRAAGFLIKRFDGRVQDSAMQHPLLASLRAAVPQIAANYEAREYNRALRQTMELADAVNAYVDTAKPWDQAK DPANGVALHETCSVSIEAFRLLSLALKPVLPKLAEAVEGFLAIQPLVWADANVPLSSTRPINAYKHLMTRVDPKQIEALL AANRDSLQATPEAAAPADAKGKSKAAKAAAGKDETPGIISIDDFAKIDLRIAKIVDCKAVEGSDKLLQLTLDVGEEKTRN VFSGIKSAYQPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASATDEKAEPGLYVLEPDSGAKPGMRVK
Specific function: Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
COG id: COG0143
COG function: function code J; Methionyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain
Homologues:
Organism=Homo sapiens, GI14043022, Length=565, Percent_Identity=26.9026548672566, Blast_Score=219, Evalue=8e-57, Organism=Homo sapiens, GI24308436, Length=547, Percent_Identity=26.508226691042, Blast_Score=153, Evalue=7e-37, Organism=Homo sapiens, GI4507947, Length=148, Percent_Identity=33.1081081081081, Blast_Score=67, Evalue=4e-11, Organism=Escherichia coli, GI1788432, Length=701, Percent_Identity=54.7788873038516, Blast_Score=751, Evalue=0.0, Organism=Escherichia coli, GI1789455, Length=110, Percent_Identity=37.2727272727273, Blast_Score=67, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17540794, Length=656, Percent_Identity=27.1341463414634, Blast_Score=230, Evalue=3e-60, Organism=Caenorhabditis elegans, GI212645096, Length=535, Percent_Identity=23.5514018691589, Blast_Score=132, Evalue=5e-31, Organism=Caenorhabditis elegans, GI71992781, Length=275, Percent_Identity=26.1818181818182, Blast_Score=100, Evalue=5e-21, Organism=Saccharomyces cerevisiae, GI6321704, Length=566, Percent_Identity=27.208480565371, Blast_Score=217, Evalue=6e-57, Organism=Saccharomyces cerevisiae, GI6321610, Length=548, Percent_Identity=24.2700729927007, Blast_Score=120, Evalue=7e-28, Organism=Drosophila melanogaster, GI24655311, Length=568, Percent_Identity=29.4014084507042, Blast_Score=227, Evalue=3e-59, Organism=Drosophila melanogaster, GI21358483, Length=535, Percent_Identity=27.1028037383178, Blast_Score=137, Evalue=2e-32,
Paralogues:
None
Copy number: 871 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): SYM_BURXL (Q143I7)
Other databases:
- EMBL: CP000270 - RefSeq: YP_557554.1 - ProteinModelPortal: Q143I7 - GeneID: 4002417 - GenomeReviews: CP000270_GR - KEGG: bxe:Bxe_A3483 - HOGENOM: HBG721667 - OMA: SAYQPEQ - ProtClustDB: PRK00133 - GO: GO:0005737 - HAMAP: MF_00098 - InterPro: IPR001412 - InterPro: IPR015413 - InterPro: IPR004495 - InterPro: IPR014758 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR014729 - InterPro: IPR002547 - InterPro: IPR009080 - InterPro: IPR013155 - Gene3D: G3DSA:2.40.50.140 - Gene3D: G3DSA:3.40.50.620 - PRINTS: PR01041 - TIGRFAMs: TIGR00398 - TIGRFAMs: TIGR00399
Pfam domain/function: PF08264 Anticodon_1; PF09334 tRNA-synt_1g; PF01588 tRNA_bind; SSF50249 Nucleic_acid_OB; SSF47323 tRNAsyn_1a_bind
EC number: =6.1.1.10
Molecular weight: Translated: 78510; Mature: 78379
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: PS00178 AA_TRNA_LIGASE_I; PS50886 TRBD
Important sites: BINDING 350-350
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPATDLSAGAPSGRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYYV CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCEEEEE GADDTHGTPVMLRAEKEGLTPKQLIDRVWQEHKRDFDSFGISFDNYYSTDSEENRVLSEN ECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCEECCC VYLALKEAGLIDARDIEQAYDPVKEMFLPDRFIKGECPKCGAKDQYGDSCEVCGSTYLPT EEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHCCCCCCCH ELINPYSVVSGATPVRKTSTHYFFRLSDPRCENFLRAWVGGLAQPEATNKMREWLGDAGE HHCCCHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC AKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLAEKRGLDFDAWVRKGS CEEECCCCCCCCCCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHCCC KAEQYHFIGKDILYFHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQS CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEECCCHHCCCCCCEEEHHH VIETGLNPEWLRYYFAAKLNSTMEDLDLNLDDFQARVNSDLVGKYVNIASRAAGFLIKRF HHHCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH DGRVQDSAMQHPLLASLRAAVPQIAANYEAREYNRALRQTMELADAVNAYVDTAKPWDQA CCCHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHC KDPANGVALHETCSVSIEAFRLLSLALKPVLPKLAEAVEGFLAIQPLVWADANVPLSSTR CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC PINAYKHLMTRVDPKQIEALLAANRDSLQATPEAAAPADAKGKSKAAKAAAGKDETPGII CHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEE SIDDFAKIDLRIAKIVDCKAVEGSDKLLQLTLDVGEEKTRNVFSGIKSAYQPEQLVGKLT EECCCHHHHEEEEEEEECEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHH VMVANLAPRKMKFGLSEGMVLAASATDEKAEPGLYVLEPDSGAKPGMRVK HHHHHCCCHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCC >Mature Secondary Structure SAPATDLSAGAPSGRRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYYV CCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCEEEEE GADDTHGTPVMLRAEKEGLTPKQLIDRVWQEHKRDFDSFGISFDNYYSTDSEENRVLSEN ECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCEECCC VYLALKEAGLIDARDIEQAYDPVKEMFLPDRFIKGECPKCGAKDQYGDSCEVCGSTYLPT EEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHCCCCCCCH ELINPYSVVSGATPVRKTSTHYFFRLSDPRCENFLRAWVGGLAQPEATNKMREWLGDAGE HHCCCHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC AKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLAEKRGLDFDAWVRKGS CEEECCCCCCCCCCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHCCC KAEQYHFIGKDILYFHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQS CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEECCCHHCCCCCCEEEHHH VIETGLNPEWLRYYFAAKLNSTMEDLDLNLDDFQARVNSDLVGKYVNIASRAAGFLIKRF HHHCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH DGRVQDSAMQHPLLASLRAAVPQIAANYEAREYNRALRQTMELADAVNAYVDTAKPWDQA CCCHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHC KDPANGVALHETCSVSIEAFRLLSLALKPVLPKLAEAVEGFLAIQPLVWADANVPLSSTR CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC PINAYKHLMTRVDPKQIEALLAANRDSLQATPEAAAPADAKGKSKAAKAAAGKDETPGII CHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEE SIDDFAKIDLRIAKIVDCKAVEGSDKLLQLTLDVGEEKTRNVFSGIKSAYQPEQLVGKLT EECCCHHHHEEEEEEEECEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHH VMVANLAPRKMKFGLSEGMVLAASATDEKAEPGLYVLEPDSGAKPGMRVK HHHHHCCCHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA