Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 91782294

GI number: 91782294

Start: 1021414

End: 1022520

Strand: Reverse

Name: yfdE [H]

Synonym: Bxe_A3539

Alternate gene names: 91782294

Gene position: 1022520-1021414 (Counterclockwise)

Preceding gene: 91782295

Following gene: 91782293

Centisome position: 20.89

GC content: 68.47

Gene sequence:

>1107_bases
ATGGGCGCAGACATGCAACCAGGCCCGTTGTCCGGCGTGCGCGTGATCGAATTCGGCGCGCTCGGCCCGGTACCGTTCTG
CGCAATGCTGCTCGCCGACATGGGCGCGGACGTAGTACAGATCACGCGGCCGCGTGCTGCGATCGATACCGGCAATTTCA
TGCAGCGCGGCCGACGGCTCGTTCCGCTCGACCTGAAACAGCCGCACGATCGCGACGCTGCGCTCGATCTGATCGCGCAC
GCGGACGTGCTGCTTGAAGGTAGCCGCCCCGGCGTGATGGAAAACCTCGGGCTCGGACCGAACGTGTGCGCCGCGCGCAA
TCCGCGCCTCGTGTACGGCCGCATGACGGGTTGGGGCCAAACTGGTCCACTCGCACCAACCGCGGGCCACGACATCAACT
ACATCGCGCTGACCGGCGTGCTCGACGCAATCGGTACTGCCGACGGCGCGCCAGTGCCGCCGCTGAATCTCGTCGGCGAT
TACGGCGGCGGCGCGATGTTTCTCGCGTTCGGTACGCTGTGTGCGTTGTGGGAAGCGCGCACCAGCGGCCACGGACAGGT
GATCGACGCGGCGATGGTGGACGGCAGCGCGATGCTGATGTCGCTGTTCTGCCGACTGCTCGCGCAAGGCGAATGGAACG
GCCCGCGCGGCACGCACATGCTCGACGGTGGCGCGCCGTGGTATGCCACCTATCGGACCGCCGACGACCGCTACGTTGCA
GTCGGCGCACTGGAAGAACCGTTCTGGCAGGCGCTCCTCGCGGGACTGGAAATTCCCGCCGAAAGCCTGCCGCCGCGCAG
CGACAGAGCCGCGTGGCCCGCGATACGGGCAGCGCTCGCCGCCTCTTTCGCAACGCGGACCCGCGACGCGTGGACCGGGC
ACTTCCGTCATTCCGACGCGTGCGTGAGTCCGGTGCTCAGCCTGCAGGAAACCGTCGAAAACGAGCACATCAATGCGCGG
CAAACCTACGTCGCCGATCGCGGTTTCGTGCGCCCCGCCGCTGCGCCGCGCCTGAGCCGCACACCCGCCGGCGAAGCCGC
TCCACCAGCTCCCGACACGGCACACGCGGTGCTCGAAGCGTGGCGTGCGAGCGCCGCGCAGCGATGA

Upstream 100 bases:

>100_bases
ACAACCTCGCCGCCGGCATGATCGTCGTCGCTGTGTTCTTCGTGCTGTCGTCTGTCTGCGTGTTCTTTGCCGGTCGCCGC
ATGGCCGGCCGCGTGTAACG

Downstream 100 bases:

>100_bases
ATGTCGTCGCCAACACTCCTTACCTATCGCCGGGACCAGGCATCATGTTTACAGGCTTGGGCGATGAATCCGGGACCGCC
ATTTCCAGTGCGGAATGGGG

Product: Alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MGADMQPGPLSGVRVIEFGALGPVPFCAMLLADMGADVVQITRPRAAIDTGNFMQRGRRLVPLDLKQPHDRDAALDLIAH
ADVLLEGSRPGVMENLGLGPNVCAARNPRLVYGRMTGWGQTGPLAPTAGHDINYIALTGVLDAIGTADGAPVPPLNLVGD
YGGGAMFLAFGTLCALWEARTSGHGQVIDAAMVDGSAMLMSLFCRLLAQGEWNGPRGTHMLDGGAPWYATYRTADDRYVA
VGALEEPFWQALLAGLEIPAESLPPRSDRAAWPAIRAALAASFATRTRDAWTGHFRHSDACVSPVLSLQETVENEHINAR
QTYVADRGFVRPAAAPRLSRTPAGEAAPPAPDTAHAVLEAWRASAAQR

Sequences:

>Translated_368_residues
MGADMQPGPLSGVRVIEFGALGPVPFCAMLLADMGADVVQITRPRAAIDTGNFMQRGRRLVPLDLKQPHDRDAALDLIAH
ADVLLEGSRPGVMENLGLGPNVCAARNPRLVYGRMTGWGQTGPLAPTAGHDINYIALTGVLDAIGTADGAPVPPLNLVGD
YGGGAMFLAFGTLCALWEARTSGHGQVIDAAMVDGSAMLMSLFCRLLAQGEWNGPRGTHMLDGGAPWYATYRTADDRYVA
VGALEEPFWQALLAGLEIPAESLPPRSDRAAWPAIRAALAASFATRTRDAWTGHFRHSDACVSPVLSLQETVENEHINAR
QTYVADRGFVRPAAAPRLSRTPAGEAAPPAPDTAHAVLEAWRASAAQR
>Mature_367_residues
GADMQPGPLSGVRVIEFGALGPVPFCAMLLADMGADVVQITRPRAAIDTGNFMQRGRRLVPLDLKQPHDRDAALDLIAHA
DVLLEGSRPGVMENLGLGPNVCAARNPRLVYGRMTGWGQTGPLAPTAGHDINYIALTGVLDAIGTADGAPVPPLNLVGDY
GGGAMFLAFGTLCALWEARTSGHGQVIDAAMVDGSAMLMSLFCRLLAQGEWNGPRGTHMLDGGAPWYATYRTADDRYVAV
GALEEPFWQALLAGLEIPAESLPPRSDRAAWPAIRAALAASFATRTRDAWTGHFRHSDACVSPVLSLQETVENEHINARQ
TYVADRGFVRPAAAPRLSRTPAGEAAPPAPDTAHAVLEAWRASAAQR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=335, Percent_Identity=44.7761194029851, Blast_Score=298, Evalue=6e-81,
Organism=Homo sapiens, GI266456254, Length=335, Percent_Identity=44.7761194029851, Blast_Score=298, Evalue=7e-81,
Organism=Homo sapiens, GI266458393, Length=247, Percent_Identity=48.9878542510121, Blast_Score=240, Evalue=1e-63,
Organism=Homo sapiens, GI266458397, Length=257, Percent_Identity=47.4708171206226, Blast_Score=239, Evalue=2e-63,
Organism=Homo sapiens, GI42822893, Length=135, Percent_Identity=48.8888888888889, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI266458395, Length=135, Percent_Identity=48.8888888888889, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI300863128, Length=395, Percent_Identity=24.8101265822785, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI300863124, Length=267, Percent_Identity=27.7153558052434, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI300863126, Length=151, Percent_Identity=29.8013245033113, Blast_Score=81, Evalue=1e-15,
Organism=Escherichia coli, GI87082093, Length=360, Percent_Identity=26.6666666666667, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1786222, Length=361, Percent_Identity=28.5318559556787, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1788717, Length=212, Percent_Identity=28.7735849056604, Blast_Score=79, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=324, Percent_Identity=36.7283950617284, Blast_Score=211, Evalue=5e-55,
Organism=Caenorhabditis elegans, GI32564160, Length=304, Percent_Identity=37.171052631579, Blast_Score=210, Evalue=1e-54,
Organism=Drosophila melanogaster, GI24585488, Length=348, Percent_Identity=40.5172413793103, Blast_Score=254, Evalue=7e-68,
Organism=Drosophila melanogaster, GI24648431, Length=333, Percent_Identity=27.027027027027, Blast_Score=105, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39009; Mature: 38878

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGADMQPGPLSGVRVIEFGALGPVPFCAMLLADMGADVVQITRPRAAIDTGNFMQRGRRL
CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCHHCCCCHHHHHCCEE
VPLDLKQPHDRDAALDLIAHADVLLEGSRPGVMENLGLGPNVCAARNPRLVYGRMTGWGQ
EEECCCCCCCHHHHHHHHHHHHEEEECCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCC
TGPLAPTAGHDINYIALTGVLDAIGTADGAPVPPLNLVGDYGGGAMFLAFGTLCALWEAR
CCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHHHHC
TSGHGQVIDAAMVDGSAMLMSLFCRLLAQGEWNGPRGTHMLDGGAPWYATYRTADDRYVA
CCCCCCEEEHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEECCCCCEEE
VGALEEPFWQALLAGLEIPAESLPPRSDRAAWPAIRAALAASFATRTRDAWTGHFRHSDA
ECCCCHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHH
CVSPVLSLQETVENEHINARQTYVADRGFVRPAAAPRLSRTPAGEAAPPAPDTAHAVLEA
HHHHHHHHHHHHHHCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
WRASAAQR
HHHHHCCC
>Mature Secondary Structure 
GADMQPGPLSGVRVIEFGALGPVPFCAMLLADMGADVVQITRPRAAIDTGNFMQRGRRL
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCHHCCCCHHHHHCCEE
VPLDLKQPHDRDAALDLIAHADVLLEGSRPGVMENLGLGPNVCAARNPRLVYGRMTGWGQ
EEECCCCCCCHHHHHHHHHHHHEEEECCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCC
TGPLAPTAGHDINYIALTGVLDAIGTADGAPVPPLNLVGDYGGGAMFLAFGTLCALWEAR
CCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHHHHC
TSGHGQVIDAAMVDGSAMLMSLFCRLLAQGEWNGPRGTHMLDGGAPWYATYRTADDRYVA
CCCCCCEEEHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEECCCCCEEE
VGALEEPFWQALLAGLEIPAESLPPRSDRAAWPAIRAALAASFATRTRDAWTGHFRHSDA
ECCCCHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHH
CVSPVLSLQETVENEHINARQTYVADRGFVRPAAAPRLSRTPAGEAAPPAPDTAHAVLEA
HHHHHHHHHHHHHHCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
WRASAAQR
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]