| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91782283
Identifier: 91782283
GI number: 91782283
Start: 1010386
End: 1011120
Strand: Direct
Name: 91782283
Synonym: Bxe_A3551
Alternate gene names: NA
Gene position: 1010386-1011120 (Clockwise)
Preceding gene: 91782282
Following gene: 91782284
Centisome position: 20.64
GC content: 65.44
Gene sequence:
>735_bases ATGAGCAACATTGATCGGCTCACCCTCGAGCGTCGCGTGCGCGTGGCAGCCCGGGCGCTAGCGCGCCATGGACTGGTGCA GGCCTGGGGGCATTGCAGCGCGCGGATCGACGGGGAATCGTTCCTGGTCTGCGCATCGAAGCCCATGGGAACGATTGGCC GCGACGAACCTGGAACCGTTGTTCGAGTGAACGCGCCCCTTCCCCAAGGGGTTCTGGGGGAGGTACGCATCCATCAGCAG ATCTACCGGTTGCGCCCGGACGTCGGCGGCGTATGTCGCATCATGCCTCCCCATCTGGTGGCATTGTCCACGCTTCGTGT CGTGCCGAAGCCGCGACATGGCGTGGGCGCGTTCAATGCCAACTGCAGGTTCTGGGACGATCCACGGCTGTTGCGCGATG ATGCGCTGGCTGCGCAGCTGGCCGACCGACTGGGGGATGCGCCATCCCTGGTCATGCGTGCGAACGGAGCCGTGACCGTG GGACCCAGCATCGAATTGGCGGCCGGCTTCGCGTGGTGTCTGGAGGACGCAGCACGCATCGAGACGCTCGTGCGGTCCGT GGCCAGTGACGCGAGTGTCGAAGCGGCGTGCCTGACAGGGGGTGAGATCGCATCGCGTCAGGTCAGTTCGGGGGCGGTCT TTGAACGGCTCTGGGAATACCTGACTGCAGGCGACACCGAGGCAAAGGCGAATGAGGGCGGCTTTCCTGATCCCGTCTGG GGGACTGCGTCGTGA
Upstream 100 bases:
>100_bases ACGGACAGCCTTGTGCAATGCCATGTGAGCACGCAATCCGAAGCTGGCCGGTCAAGATTGAAAACGGCCGCGTATTCGTC GACGCTGGAGCGCACGCACT
Downstream 100 bases:
>100_bases AAGCCGGAAAAGACCGCGTAACGGAATCGGCGGCATTGCTGCCGGGTGTTGCCGCTTGCTGCCAGGATACTGGATGGGGT AGTGTAATGCCGGTTTCAGC
Product: HCOMODA decarboxylase (CmtD)
Products: NA
Alternate protein names: HCOMODA Decarboxylase; Class II Aldolase And Adducin N-Terminal Domain-Containing; Class II Aldolase/Adducin Family Protein
Number of amino acids: Translated: 244; Mature: 243
Protein sequence:
>244_residues MSNIDRLTLERRVRVAARALARHGLVQAWGHCSARIDGESFLVCASKPMGTIGRDEPGTVVRVNAPLPQGVLGEVRIHQQ IYRLRPDVGGVCRIMPPHLVALSTLRVVPKPRHGVGAFNANCRFWDDPRLLRDDALAAQLADRLGDAPSLVMRANGAVTV GPSIELAAGFAWCLEDAARIETLVRSVASDASVEAACLTGGEIASRQVSSGAVFERLWEYLTAGDTEAKANEGGFPDPVW GTAS
Sequences:
>Translated_244_residues MSNIDRLTLERRVRVAARALARHGLVQAWGHCSARIDGESFLVCASKPMGTIGRDEPGTVVRVNAPLPQGVLGEVRIHQQ IYRLRPDVGGVCRIMPPHLVALSTLRVVPKPRHGVGAFNANCRFWDDPRLLRDDALAAQLADRLGDAPSLVMRANGAVTV GPSIELAAGFAWCLEDAARIETLVRSVASDASVEAACLTGGEIASRQVSSGAVFERLWEYLTAGDTEAKANEGGFPDPVW GTAS >Mature_243_residues SNIDRLTLERRVRVAARALARHGLVQAWGHCSARIDGESFLVCASKPMGTIGRDEPGTVVRVNAPLPQGVLGEVRIHQQI YRLRPDVGGVCRIMPPHLVALSTLRVVPKPRHGVGAFNANCRFWDDPRLLRDDALAAQLADRLGDAPSLVMRANGAVTVG PSIELAAGFAWCLEDAARIETLVRSVASDASVEAACLTGGEIASRQVSSGAVFERLWEYLTAGDTEAKANEGGFPDPVWG TAS
Specific function: Unknown
COG id: COG0235
COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26112; Mature: 25981
Theoretical pI: Translated: 7.43; Mature: 7.43
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNIDRLTLERRVRVAARALARHGLVQAWGHCSARIDGESFLVCASKPMGTIGRDEPGTV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEECCCCCCCCCCCCCCCE VRVNAPLPQGVLGEVRIHQQIYRLRPDVGGVCRIMPPHLVALSTLRVVPKPRHGVGAFNA EEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCC NCRFWDDPRLLRDDALAAQLADRLGDAPSLVMRANGAVTVGPSIELAAGFAWCLEDAARI CCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCHHHHHHHHHHHHHHHHH ETLVRSVASDASVEAACLTGGEIASRQVSSGAVFERLWEYLTAGDTEAKANEGGFPDPVW HHHHHHHHCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC GTAS CCCC >Mature Secondary Structure SNIDRLTLERRVRVAARALARHGLVQAWGHCSARIDGESFLVCASKPMGTIGRDEPGTV CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEECCCCCCCCCCCCCCCE VRVNAPLPQGVLGEVRIHQQIYRLRPDVGGVCRIMPPHLVALSTLRVVPKPRHGVGAFNA EEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCC NCRFWDDPRLLRDDALAAQLADRLGDAPSLVMRANGAVTVGPSIELAAGFAWCLEDAARI CCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCHHHHHHHHHHHHHHHHH ETLVRSVASDASVEAACLTGGEIASRQVSSGAVFERLWEYLTAGDTEAKANEGGFPDPVW HHHHHHHHCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC GTAS CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA