| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is dan [H]
Identifier: 91782245
GI number: 91782245
Start: 966489
End: 968213
Strand: Reverse
Name: dan [H]
Synonym: Bxe_A3590
Alternate gene names: 91782245
Gene position: 968213-966489 (Counterclockwise)
Preceding gene: 91782249
Following gene: 91782244
Centisome position: 19.78
GC content: 61.22
Gene sequence:
>1725_bases ATGAGTGCGACGTATGACCTCGTGATTCGCGGCGGCAGTGTCATCGATGGTTTGGGAGGACCCGCTATCGAAACTGACAT TGGCATCATAGGCGGCCGGATCGCAGAGATTGGCTCGATCAGCACGGAGGGTCGCGAGGAAATCGACGCACGCGGCCAGA TCGTCACACCGGGTTTCGTCGATATTCATACCCATTACGATGGCCAGGCGATGTGGGAATCGAGATTCCTGCCTTCCAGT TGGCACGGCGTAACGACCGTCGTGATGGGCAATTGCGGCGTCGGCTTTGCGCCGGTGCGTGTGCAGGACCGCGACCGGCT GATCGAACTGATGGAAGGCGTGGAAGATATTCCGGGGATTGCACTGCACGAAGGACTGGACTGGCAGTGGGAGGGCTTTG CTTCGTTCATGGCGGCTCTCGAGCGCCGACCGCATGACATCGATTTCTGCGCACACGTGCCTCACGCCGCGCTGCGCGTC TATGTCATGGGCGCGCGCGCGGCGCGACTCGAAATGGCGACACCCGAAGATGTCGCCGAAATGCGACGGCTTACTGCTGA AGCGGTGCGCGCAGGCGCGATTGGCGTGAGTACGTCCCGCTCGATCAATCATAAGTCCGTCAAAGGCGATCCAACGCCTT CGCTGCGGGCGGCCGAAAATGAACTGCTCGGTCTCGCGCTCGGCGTCAAGGATGCGGGACGCGGTGTGCTGCAGATGATC ATGGACTTCGACGATCCGACAGAAATCCACTCGGACTTCGCCATGATGCGCAGGCTCGTCGAGCAGTCCGGTCGGCCACT GTCGTTCTCGCTGATGCAGAAGCACGGCAATACAGATGGCTGGCGCAAACTGCTCGCGTTAACCGAAGAGGCCAATCGCG ACGGCCTGCAAATGCGCGCGCAGGTGGCTCCGCGTGGCATAGGTGTACTGCTTGGGCTGCAGACGAGCCGGAACATTTTT TCCGAGTGTCCGACCTACCGGAAGTTTGCGAACGAGCCGCTTGCAAGCCGCATCGCGCAGATGCGCAAACCGGAAATACG CGAGGCACTGATTGCCGAACTCGTGGCGACGGAAACCGGCCTCGGCAAGCGGCTATCGGAGTTCGACAACATCTTCGCTT TCGGCGATCTGGCTGACTACGATCCGGGCGAGGACGCCTCGATCACGGCCATTTCGCGGCAGCAGAATCGGTCACCGGAA CAGGTTGCCTACGACCTGACGATCGCAAACGAAGGCCGCGGCATTCTGTATTCGCCGTTTGCCAACTACGCGTTCCGCAA TCTCGATGCATGCGCCGAAATGATGGAAAGTCCGTACACGGTACTAGGGCTCGGCGACGGCGGCGCACACGTCGCGATGA TCTCGGATTCGAGCTTCCAGACATTCGTGTTGACCCATTACGGCCGTGGTGGCCTGTTCGATTTGCCCCATCTCGTCAAG CGTCAGACGAGCGACACCGCGCGCATGATCGGCCTGCTCGATCGCGGGCATCTCGCGCCTGGCATGAAAGCCGATCTCAA TGTCATCGATATGAACGCGCTCGAGATCCAGCCGCCGCATATGTTCCACGACCTGCCTGCAGGCGGCGGACGGCTGCTGC AAAACGCGAACGGCTACGTCGCGACCATCGTTTCGGGCGTGCCCGTGTACCGGCACGGAAAAGCGACCGGCGCGCTGCCC GGAAAACTCGTGCGCGGCCAGCAACCCGCGCCGCAATGCCAGTAA
Upstream 100 bases:
>100_bases GATGCAAATTCCAAGTACGATTATCGTTACGGTAAGACCAATTGACCATAAGGGTTTTTATTGATCCGGTGGTCGTTCAG ATCCATCAATGGAGACAGGT
Downstream 100 bases:
>100_bases ACCACCGGGACGACTTCACTTATGTCCGATCTGTCTTCACACATCCTCGTGCTAGGTGCTGGCCACGCCGGCGACTCGGT AGCCGCCTTTTTACGGCAAT
Product: dihydroorotase
Products: NA
Alternate protein names: N-acyl-D-amino-acid deacylase [H]
Number of amino acids: Translated: 574; Mature: 573
Protein sequence:
>574_residues MSATYDLVIRGGSVIDGLGGPAIETDIGIIGGRIAEIGSISTEGREEIDARGQIVTPGFVDIHTHYDGQAMWESRFLPSS WHGVTTVVMGNCGVGFAPVRVQDRDRLIELMEGVEDIPGIALHEGLDWQWEGFASFMAALERRPHDIDFCAHVPHAALRV YVMGARAARLEMATPEDVAEMRRLTAEAVRAGAIGVSTSRSINHKSVKGDPTPSLRAAENELLGLALGVKDAGRGVLQMI MDFDDPTEIHSDFAMMRRLVEQSGRPLSFSLMQKHGNTDGWRKLLALTEEANRDGLQMRAQVAPRGIGVLLGLQTSRNIF SECPTYRKFANEPLASRIAQMRKPEIREALIAELVATETGLGKRLSEFDNIFAFGDLADYDPGEDASITAISRQQNRSPE QVAYDLTIANEGRGILYSPFANYAFRNLDACAEMMESPYTVLGLGDGGAHVAMISDSSFQTFVLTHYGRGGLFDLPHLVK RQTSDTARMIGLLDRGHLAPGMKADLNVIDMNALEIQPPHMFHDLPAGGGRLLQNANGYVATIVSGVPVYRHGKATGALP GKLVRGQQPAPQCQ
Sequences:
>Translated_574_residues MSATYDLVIRGGSVIDGLGGPAIETDIGIIGGRIAEIGSISTEGREEIDARGQIVTPGFVDIHTHYDGQAMWESRFLPSS WHGVTTVVMGNCGVGFAPVRVQDRDRLIELMEGVEDIPGIALHEGLDWQWEGFASFMAALERRPHDIDFCAHVPHAALRV YVMGARAARLEMATPEDVAEMRRLTAEAVRAGAIGVSTSRSINHKSVKGDPTPSLRAAENELLGLALGVKDAGRGVLQMI MDFDDPTEIHSDFAMMRRLVEQSGRPLSFSLMQKHGNTDGWRKLLALTEEANRDGLQMRAQVAPRGIGVLLGLQTSRNIF SECPTYRKFANEPLASRIAQMRKPEIREALIAELVATETGLGKRLSEFDNIFAFGDLADYDPGEDASITAISRQQNRSPE QVAYDLTIANEGRGILYSPFANYAFRNLDACAEMMESPYTVLGLGDGGAHVAMISDSSFQTFVLTHYGRGGLFDLPHLVK RQTSDTARMIGLLDRGHLAPGMKADLNVIDMNALEIQPPHMFHDLPAGGGRLLQNANGYVATIVSGVPVYRHGKATGALP GKLVRGQQPAPQCQ >Mature_573_residues SATYDLVIRGGSVIDGLGGPAIETDIGIIGGRIAEIGSISTEGREEIDARGQIVTPGFVDIHTHYDGQAMWESRFLPSSW HGVTTVVMGNCGVGFAPVRVQDRDRLIELMEGVEDIPGIALHEGLDWQWEGFASFMAALERRPHDIDFCAHVPHAALRVY VMGARAARLEMATPEDVAEMRRLTAEAVRAGAIGVSTSRSINHKSVKGDPTPSLRAAENELLGLALGVKDAGRGVLQMIM DFDDPTEIHSDFAMMRRLVEQSGRPLSFSLMQKHGNTDGWRKLLALTEEANRDGLQMRAQVAPRGIGVLLGLQTSRNIFS ECPTYRKFANEPLASRIAQMRKPEIREALIAELVATETGLGKRLSEFDNIFAFGDLADYDPGEDASITAISRQQNRSPEQ VAYDLTIANEGRGILYSPFANYAFRNLDACAEMMESPYTVLGLGDGGAHVAMISDSSFQTFVLTHYGRGGLFDLPHLVKR QTSDTARMIGLLDRGHLAPGMKADLNVIDMNALEIQPPHMFHDLPAGGGRLLQNANGYVATIVSGVPVYRHGKATGALPG KLVRGQQPAPQCQ
Specific function: Has a wide specificity; hydrolyzes N-acyl derivative of neutral D-amino acids [H]
COG id: COG3653
COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR023100 - InterPro: IPR012855 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]
EC number: =3.5.1.81 [H]
Molecular weight: Translated: 62380; Mature: 62249
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATYDLVIRGGSVIDGLGGPAIETDIGIIGGRIAEIGSISTEGREEIDARGQIVTPGFV CCCCEEEEEECCCEECCCCCCCCCCCHHHHCCHHHHHCCCCCCCHHHHCCCCCEECCCEE DIHTHYDGQAMWESRFLPSSWHGVTTVVMGNCGVGFAPVRVQDRDRLIELMEGVEDIPGI EEEECCCCCHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCCE ALHEGLDWQWEGFASFMAALERRPHDIDFCAHVPHAALRVYVMGARAARLEMATPEDVAE EEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCHHHEEEEEECCCCEEEECCCHHHHHH MRRLTAEAVRAGAIGVSTSRSINHKSVKGDPTPSLRAAENELLGLALGVKDAGRGVLQMI HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHEEEEECCCHHCHHHHHHH MDFDDPTEIHSDFAMMRRLVEQSGRPLSFSLMQKHGNTDGWRKLLALTEEANRDGLQMRA HCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEHH QVAPRGIGVLLGLQTSRNIFSECPTYRKFANEPLASRIAQMRKPEIREALIAELVATETG HHCCCCEEEEEECCCCHHHHHHCCHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC LGKRLSEFDNIFAFGDLADYDPGEDASITAISRQQNRSPEQVAYDLTIANEGRGILYSPF HHHHHHHHHCEEEECCCCCCCCCCCCEEEEECHHHCCCHHHEEEEEEEECCCCEEEECCH ANYAFRNLDACAEMMESPYTVLGLGDGGAHVAMISDSSFQTFVLTHYGRGGLFDLPHLVK HHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCCCHHHHH RQTSDTARMIGLLDRGHLAPGMKADLNVIDMNALEIQPPHMFHDLPAGGGRLLQNANGYV HCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCCHHHHCCCCCCCHHHHCCCCEE ATIVSGVPVYRHGKATGALPGKLVRGQQPAPQCQ EEEECCCCEEECCCCCCCCCCHHHCCCCCCCCCC >Mature Secondary Structure SATYDLVIRGGSVIDGLGGPAIETDIGIIGGRIAEIGSISTEGREEIDARGQIVTPGFV CCCEEEEEECCCEECCCCCCCCCCCHHHHCCHHHHHCCCCCCCHHHHCCCCCEECCCEE DIHTHYDGQAMWESRFLPSSWHGVTTVVMGNCGVGFAPVRVQDRDRLIELMEGVEDIPGI EEEECCCCCHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCCE ALHEGLDWQWEGFASFMAALERRPHDIDFCAHVPHAALRVYVMGARAARLEMATPEDVAE EEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCHHHEEEEEECCCCEEEECCCHHHHHH MRRLTAEAVRAGAIGVSTSRSINHKSVKGDPTPSLRAAENELLGLALGVKDAGRGVLQMI HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHEEEEECCCHHCHHHHHHH MDFDDPTEIHSDFAMMRRLVEQSGRPLSFSLMQKHGNTDGWRKLLALTEEANRDGLQMRA HCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEHH QVAPRGIGVLLGLQTSRNIFSECPTYRKFANEPLASRIAQMRKPEIREALIAELVATETG HHCCCCEEEEEECCCCHHHHHHCCHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC LGKRLSEFDNIFAFGDLADYDPGEDASITAISRQQNRSPEQVAYDLTIANEGRGILYSPF HHHHHHHHHCEEEECCCCCCCCCCCCEEEEECHHHCCCHHHEEEEEEEECCCCEEEECCH ANYAFRNLDACAEMMESPYTVLGLGDGGAHVAMISDSSFQTFVLTHYGRGGLFDLPHLVK HHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCCCHHHHH RQTSDTARMIGLLDRGHLAPGMKADLNVIDMNALEIQPPHMFHDLPAGGGRLLQNANGYV HCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCCHHHHCCCCCCCHHHHCCCCEE ATIVSGVPVYRHGKATGALPGKLVRGQQPAPQCQ EEEECCCCEEECCCCCCCCCCHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8541651 [H]