Definition Burkholderia xenovorans LB400 chromosome 1, complete sequence.
Accession NC_007951
Length 4,895,836

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The map label for this gene is dan [H]

Identifier: 91782245

GI number: 91782245

Start: 966489

End: 968213

Strand: Reverse

Name: dan [H]

Synonym: Bxe_A3590

Alternate gene names: 91782245

Gene position: 968213-966489 (Counterclockwise)

Preceding gene: 91782249

Following gene: 91782244

Centisome position: 19.78

GC content: 61.22

Gene sequence:

>1725_bases
ATGAGTGCGACGTATGACCTCGTGATTCGCGGCGGCAGTGTCATCGATGGTTTGGGAGGACCCGCTATCGAAACTGACAT
TGGCATCATAGGCGGCCGGATCGCAGAGATTGGCTCGATCAGCACGGAGGGTCGCGAGGAAATCGACGCACGCGGCCAGA
TCGTCACACCGGGTTTCGTCGATATTCATACCCATTACGATGGCCAGGCGATGTGGGAATCGAGATTCCTGCCTTCCAGT
TGGCACGGCGTAACGACCGTCGTGATGGGCAATTGCGGCGTCGGCTTTGCGCCGGTGCGTGTGCAGGACCGCGACCGGCT
GATCGAACTGATGGAAGGCGTGGAAGATATTCCGGGGATTGCACTGCACGAAGGACTGGACTGGCAGTGGGAGGGCTTTG
CTTCGTTCATGGCGGCTCTCGAGCGCCGACCGCATGACATCGATTTCTGCGCACACGTGCCTCACGCCGCGCTGCGCGTC
TATGTCATGGGCGCGCGCGCGGCGCGACTCGAAATGGCGACACCCGAAGATGTCGCCGAAATGCGACGGCTTACTGCTGA
AGCGGTGCGCGCAGGCGCGATTGGCGTGAGTACGTCCCGCTCGATCAATCATAAGTCCGTCAAAGGCGATCCAACGCCTT
CGCTGCGGGCGGCCGAAAATGAACTGCTCGGTCTCGCGCTCGGCGTCAAGGATGCGGGACGCGGTGTGCTGCAGATGATC
ATGGACTTCGACGATCCGACAGAAATCCACTCGGACTTCGCCATGATGCGCAGGCTCGTCGAGCAGTCCGGTCGGCCACT
GTCGTTCTCGCTGATGCAGAAGCACGGCAATACAGATGGCTGGCGCAAACTGCTCGCGTTAACCGAAGAGGCCAATCGCG
ACGGCCTGCAAATGCGCGCGCAGGTGGCTCCGCGTGGCATAGGTGTACTGCTTGGGCTGCAGACGAGCCGGAACATTTTT
TCCGAGTGTCCGACCTACCGGAAGTTTGCGAACGAGCCGCTTGCAAGCCGCATCGCGCAGATGCGCAAACCGGAAATACG
CGAGGCACTGATTGCCGAACTCGTGGCGACGGAAACCGGCCTCGGCAAGCGGCTATCGGAGTTCGACAACATCTTCGCTT
TCGGCGATCTGGCTGACTACGATCCGGGCGAGGACGCCTCGATCACGGCCATTTCGCGGCAGCAGAATCGGTCACCGGAA
CAGGTTGCCTACGACCTGACGATCGCAAACGAAGGCCGCGGCATTCTGTATTCGCCGTTTGCCAACTACGCGTTCCGCAA
TCTCGATGCATGCGCCGAAATGATGGAAAGTCCGTACACGGTACTAGGGCTCGGCGACGGCGGCGCACACGTCGCGATGA
TCTCGGATTCGAGCTTCCAGACATTCGTGTTGACCCATTACGGCCGTGGTGGCCTGTTCGATTTGCCCCATCTCGTCAAG
CGTCAGACGAGCGACACCGCGCGCATGATCGGCCTGCTCGATCGCGGGCATCTCGCGCCTGGCATGAAAGCCGATCTCAA
TGTCATCGATATGAACGCGCTCGAGATCCAGCCGCCGCATATGTTCCACGACCTGCCTGCAGGCGGCGGACGGCTGCTGC
AAAACGCGAACGGCTACGTCGCGACCATCGTTTCGGGCGTGCCCGTGTACCGGCACGGAAAAGCGACCGGCGCGCTGCCC
GGAAAACTCGTGCGCGGCCAGCAACCCGCGCCGCAATGCCAGTAA

Upstream 100 bases:

>100_bases
GATGCAAATTCCAAGTACGATTATCGTTACGGTAAGACCAATTGACCATAAGGGTTTTTATTGATCCGGTGGTCGTTCAG
ATCCATCAATGGAGACAGGT

Downstream 100 bases:

>100_bases
ACCACCGGGACGACTTCACTTATGTCCGATCTGTCTTCACACATCCTCGTGCTAGGTGCTGGCCACGCCGGCGACTCGGT
AGCCGCCTTTTTACGGCAAT

Product: dihydroorotase

Products: NA

Alternate protein names: N-acyl-D-amino-acid deacylase [H]

Number of amino acids: Translated: 574; Mature: 573

Protein sequence:

>574_residues
MSATYDLVIRGGSVIDGLGGPAIETDIGIIGGRIAEIGSISTEGREEIDARGQIVTPGFVDIHTHYDGQAMWESRFLPSS
WHGVTTVVMGNCGVGFAPVRVQDRDRLIELMEGVEDIPGIALHEGLDWQWEGFASFMAALERRPHDIDFCAHVPHAALRV
YVMGARAARLEMATPEDVAEMRRLTAEAVRAGAIGVSTSRSINHKSVKGDPTPSLRAAENELLGLALGVKDAGRGVLQMI
MDFDDPTEIHSDFAMMRRLVEQSGRPLSFSLMQKHGNTDGWRKLLALTEEANRDGLQMRAQVAPRGIGVLLGLQTSRNIF
SECPTYRKFANEPLASRIAQMRKPEIREALIAELVATETGLGKRLSEFDNIFAFGDLADYDPGEDASITAISRQQNRSPE
QVAYDLTIANEGRGILYSPFANYAFRNLDACAEMMESPYTVLGLGDGGAHVAMISDSSFQTFVLTHYGRGGLFDLPHLVK
RQTSDTARMIGLLDRGHLAPGMKADLNVIDMNALEIQPPHMFHDLPAGGGRLLQNANGYVATIVSGVPVYRHGKATGALP
GKLVRGQQPAPQCQ

Sequences:

>Translated_574_residues
MSATYDLVIRGGSVIDGLGGPAIETDIGIIGGRIAEIGSISTEGREEIDARGQIVTPGFVDIHTHYDGQAMWESRFLPSS
WHGVTTVVMGNCGVGFAPVRVQDRDRLIELMEGVEDIPGIALHEGLDWQWEGFASFMAALERRPHDIDFCAHVPHAALRV
YVMGARAARLEMATPEDVAEMRRLTAEAVRAGAIGVSTSRSINHKSVKGDPTPSLRAAENELLGLALGVKDAGRGVLQMI
MDFDDPTEIHSDFAMMRRLVEQSGRPLSFSLMQKHGNTDGWRKLLALTEEANRDGLQMRAQVAPRGIGVLLGLQTSRNIF
SECPTYRKFANEPLASRIAQMRKPEIREALIAELVATETGLGKRLSEFDNIFAFGDLADYDPGEDASITAISRQQNRSPE
QVAYDLTIANEGRGILYSPFANYAFRNLDACAEMMESPYTVLGLGDGGAHVAMISDSSFQTFVLTHYGRGGLFDLPHLVK
RQTSDTARMIGLLDRGHLAPGMKADLNVIDMNALEIQPPHMFHDLPAGGGRLLQNANGYVATIVSGVPVYRHGKATGALP
GKLVRGQQPAPQCQ
>Mature_573_residues
SATYDLVIRGGSVIDGLGGPAIETDIGIIGGRIAEIGSISTEGREEIDARGQIVTPGFVDIHTHYDGQAMWESRFLPSSW
HGVTTVVMGNCGVGFAPVRVQDRDRLIELMEGVEDIPGIALHEGLDWQWEGFASFMAALERRPHDIDFCAHVPHAALRVY
VMGARAARLEMATPEDVAEMRRLTAEAVRAGAIGVSTSRSINHKSVKGDPTPSLRAAENELLGLALGVKDAGRGVLQMIM
DFDDPTEIHSDFAMMRRLVEQSGRPLSFSLMQKHGNTDGWRKLLALTEEANRDGLQMRAQVAPRGIGVLLGLQTSRNIFS
ECPTYRKFANEPLASRIAQMRKPEIREALIAELVATETGLGKRLSEFDNIFAFGDLADYDPGEDASITAISRQQNRSPEQ
VAYDLTIANEGRGILYSPFANYAFRNLDACAEMMESPYTVLGLGDGGAHVAMISDSSFQTFVLTHYGRGGLFDLPHLVKR
QTSDTARMIGLLDRGHLAPGMKADLNVIDMNALEIQPPHMFHDLPAGGGRLLQNANGYVATIVSGVPVYRHGKATGALPG
KLVRGQQPAPQCQ

Specific function: Has a wide specificity; hydrolyzes N-acyl derivative of neutral D-amino acids [H]

COG id: COG3653

COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR023100
- InterPro:   IPR012855
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]

EC number: =3.5.1.81 [H]

Molecular weight: Translated: 62380; Mature: 62249

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATYDLVIRGGSVIDGLGGPAIETDIGIIGGRIAEIGSISTEGREEIDARGQIVTPGFV
CCCCEEEEEECCCEECCCCCCCCCCCHHHHCCHHHHHCCCCCCCHHHHCCCCCEECCCEE
DIHTHYDGQAMWESRFLPSSWHGVTTVVMGNCGVGFAPVRVQDRDRLIELMEGVEDIPGI
EEEECCCCCHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCCE
ALHEGLDWQWEGFASFMAALERRPHDIDFCAHVPHAALRVYVMGARAARLEMATPEDVAE
EEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCHHHEEEEEECCCCEEEECCCHHHHHH
MRRLTAEAVRAGAIGVSTSRSINHKSVKGDPTPSLRAAENELLGLALGVKDAGRGVLQMI
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHEEEEECCCHHCHHHHHHH
MDFDDPTEIHSDFAMMRRLVEQSGRPLSFSLMQKHGNTDGWRKLLALTEEANRDGLQMRA
HCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEHH
QVAPRGIGVLLGLQTSRNIFSECPTYRKFANEPLASRIAQMRKPEIREALIAELVATETG
HHCCCCEEEEEECCCCHHHHHHCCHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC
LGKRLSEFDNIFAFGDLADYDPGEDASITAISRQQNRSPEQVAYDLTIANEGRGILYSPF
HHHHHHHHHCEEEECCCCCCCCCCCCEEEEECHHHCCCHHHEEEEEEEECCCCEEEECCH
ANYAFRNLDACAEMMESPYTVLGLGDGGAHVAMISDSSFQTFVLTHYGRGGLFDLPHLVK
HHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCCCHHHHH
RQTSDTARMIGLLDRGHLAPGMKADLNVIDMNALEIQPPHMFHDLPAGGGRLLQNANGYV
HCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCCHHHHCCCCCCCHHHHCCCCEE
ATIVSGVPVYRHGKATGALPGKLVRGQQPAPQCQ
EEEECCCCEEECCCCCCCCCCHHHCCCCCCCCCC
>Mature Secondary Structure 
SATYDLVIRGGSVIDGLGGPAIETDIGIIGGRIAEIGSISTEGREEIDARGQIVTPGFV
CCCEEEEEECCCEECCCCCCCCCCCHHHHCCHHHHHCCCCCCCHHHHCCCCCEECCCEE
DIHTHYDGQAMWESRFLPSSWHGVTTVVMGNCGVGFAPVRVQDRDRLIELMEGVEDIPGI
EEEECCCCCHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCCE
ALHEGLDWQWEGFASFMAALERRPHDIDFCAHVPHAALRVYVMGARAARLEMATPEDVAE
EEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCHHHEEEEEECCCCEEEECCCHHHHHH
MRRLTAEAVRAGAIGVSTSRSINHKSVKGDPTPSLRAAENELLGLALGVKDAGRGVLQMI
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHEEEEECCCHHCHHHHHHH
MDFDDPTEIHSDFAMMRRLVEQSGRPLSFSLMQKHGNTDGWRKLLALTEEANRDGLQMRA
HCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEHH
QVAPRGIGVLLGLQTSRNIFSECPTYRKFANEPLASRIAQMRKPEIREALIAELVATETG
HHCCCCEEEEEECCCCHHHHHHCCHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC
LGKRLSEFDNIFAFGDLADYDPGEDASITAISRQQNRSPEQVAYDLTIANEGRGILYSPF
HHHHHHHHHCEEEECCCCCCCCCCCCEEEEECHHHCCCHHHEEEEEEEECCCCEEEECCH
ANYAFRNLDACAEMMESPYTVLGLGDGGAHVAMISDSSFQTFVLTHYGRGGLFDLPHLVK
HHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCCCHHHHH
RQTSDTARMIGLLDRGHLAPGMKADLNVIDMNALEIQPPHMFHDLPAGGGRLLQNANGYV
HCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCCHHHHCCCCCCCHHHHCCCCEE
ATIVSGVPVYRHGKATGALPGKLVRGQQPAPQCQ
EEEECCCCEEECCCCCCCCCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8541651 [H]