| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is yibD [C]
Identifier: 91782112
GI number: 91782112
Start: 823953
End: 824954
Strand: Direct
Name: yibD [C]
Synonym: Bxe_A3723
Alternate gene names: 91782112
Gene position: 823953-824954 (Clockwise)
Preceding gene: 91782111
Following gene: 91782113
Centisome position: 16.83
GC content: 58.98
Gene sequence:
>1002_bases ATGGGAGCTACCCTTAATTCACCGGTCCCGGAGCGAACTGCGCCGGTATTGTCGGTCATCGTGCTTTGTTACCGGCAGGA CGAGTACGTCGGTGCATGTCTGCAAAGCGTCGTCGACCAGCATCTCGATGTGCCATTCGAGATCATCGTGGGCGATGACA ATTCGCCCGACAATTCACTGGCTGTCATCGAGTCCTTCCGGGCGCGTTACCCGGACCTGATCAAGGTCGTTGCGCACGAC ACCAACGTCGGCTGCGCAGCGAATTTCGCCGATACCGTGGCGATCGCGAAGGGCGAATTCATCGCGAACATCGACGGCGA CGATGTCATGCTGCCCGGCAAGCTTCAGCGCCAGCTCGACTTCCTGAAAGCGCATCCCGAATGCGGCCTCGTGGTGCACA GGATGCGCACGGTGGACCAGGATACTTTGGAGCCCGTGCTGTATCCGTTGCCGAAAAAAAAGCCCGCCACGTTCGACGCT GCCTACCTCATCAGAAATGGACCGTACTTCTTTCACAGCTCCGAAATGTATCGGGCTCGCCTGCGCCGTCGCGGGCCCGT CGACGTAGGTCTGAAAGCAGTCTGCGATCTGGCCCATCTGCTACAGGTCGTGGTCGGTACGCAAGGCTGCTACCTGGACG AAGAGTTGGGTCTTTACCGCGTCAACCGGACCGGCATGACCTCCATGCGAATCAGGAATCCGGAGCGTCATAGGGAAAGC ATGAACGACATGATCGAGACCTGTCTGATTGCGGCCAATCTGGGTGTGGAGAGTGATGCGGTCAACCGGGGCCGCGCGAG GTTCTATCTGACCTCGGCCATCTTCTATCTGGAGCATGGGCGCGAGGACAGTTTCGAGGATTGCATCGAAGCGAGCCGGC GTTCCGCACGAATCGGTATGAAGCAACTGGTTCTGTACTCCATGCGCCGGTGGCCGCGTGTGTTGTGCACTGTCTATACG CGAGCCAAGCAGGTGGCGGGACGACAACGGATGAACGCATGA
Upstream 100 bases:
>100_bases TGGCTCGCGATGGTTGCCTTGACCATCGCGGTATCGCCAATCATCCAACGAAAGGCTCGCCACCTGGCCGGGCGACTCGC CTTCAACTGAGAGAAACAGC
Downstream 100 bases:
>100_bases GTACAGCCATGCAGGAAAACGAGAGGCCCGTTACGACCGGAGTGAGGCTTCTCGACGTAATGAACCGGATCTTGCTGGCC TGGTATCGGCTCAAGACCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MGATLNSPVPERTAPVLSVIVLCYRQDEYVGACLQSVVDQHLDVPFEIIVGDDNSPDNSLAVIESFRARYPDLIKVVAHD TNVGCAANFADTVAIAKGEFIANIDGDDVMLPGKLQRQLDFLKAHPECGLVVHRMRTVDQDTLEPVLYPLPKKKPATFDA AYLIRNGPYFFHSSEMYRARLRRRGPVDVGLKAVCDLAHLLQVVVGTQGCYLDEELGLYRVNRTGMTSMRIRNPERHRES MNDMIETCLIAANLGVESDAVNRGRARFYLTSAIFYLEHGREDSFEDCIEASRRSARIGMKQLVLYSMRRWPRVLCTVYT RAKQVAGRQRMNA
Sequences:
>Translated_333_residues MGATLNSPVPERTAPVLSVIVLCYRQDEYVGACLQSVVDQHLDVPFEIIVGDDNSPDNSLAVIESFRARYPDLIKVVAHD TNVGCAANFADTVAIAKGEFIANIDGDDVMLPGKLQRQLDFLKAHPECGLVVHRMRTVDQDTLEPVLYPLPKKKPATFDA AYLIRNGPYFFHSSEMYRARLRRRGPVDVGLKAVCDLAHLLQVVVGTQGCYLDEELGLYRVNRTGMTSMRIRNPERHRES MNDMIETCLIAANLGVESDAVNRGRARFYLTSAIFYLEHGREDSFEDCIEASRRSARIGMKQLVLYSMRRWPRVLCTVYT RAKQVAGRQRMNA >Mature_332_residues GATLNSPVPERTAPVLSVIVLCYRQDEYVGACLQSVVDQHLDVPFEIIVGDDNSPDNSLAVIESFRARYPDLIKVVAHDT NVGCAANFADTVAIAKGEFIANIDGDDVMLPGKLQRQLDFLKAHPECGLVVHRMRTVDQDTLEPVLYPLPKKKPATFDAA YLIRNGPYFFHSSEMYRARLRRRGPVDVGLKAVCDLAHLLQVVVGTQGCYLDEELGLYRVNRTGMTSMRIRNPERHRESM NDMIETCLIAANLGVESDAVNRGRARFYLTSAIFYLEHGREDSFEDCIEASRRSARIGMKQLVLYSMRRWPRVLCTVYTR AKQVAGRQRMNA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 37500; Mature: 37368
Theoretical pI: Translated: 7.72; Mature: 7.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGATLNSPVPERTAPVLSVIVLCYRQDEYVGACLQSVVDQHLDVPFEIIVGDDNSPDNSL CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH AVIESFRARYPDLIKVVAHDTNVGCAANFADTVAIAKGEFIANIDGDDVMLPGKLQRQLD HHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHEEECCCEEEECCCCCEECCHHHHHHHH FLKAHPECGLVVHRMRTVDQDTLEPVLYPLPKKKPATFDAAYLIRNGPYFFHSSEMYRAR HHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHEEEEECCCEEEECHHHHHHH LRRRGPVDVGLKAVCDLAHLLQVVVGTQGCYLDEELGLYRVNRTGMTSMRIRNPERHRES HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCEEEECCCCCCCEEECCHHHHHHH MNDMIETCLIAANLGVESDAVNRGRARFYLTSAIFYLEHGREDSFEDCIEASRRSARIGM HHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH KQLVLYSMRRWPRVLCTVYTRAKQVAGRQRMNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GATLNSPVPERTAPVLSVIVLCYRQDEYVGACLQSVVDQHLDVPFEIIVGDDNSPDNSL CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH AVIESFRARYPDLIKVVAHDTNVGCAANFADTVAIAKGEFIANIDGDDVMLPGKLQRQLD HHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHEEECCCEEEECCCCCEECCHHHHHHHH FLKAHPECGLVVHRMRTVDQDTLEPVLYPLPKKKPATFDAAYLIRNGPYFFHSSEMYRAR HHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHEEEEECCCEEEECHHHHHHH LRRRGPVDVGLKAVCDLAHLLQVVVGTQGCYLDEELGLYRVNRTGMTSMRIRNPERHRES HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCEEEECCCCCCCEEECCHHHHHHH MNDMIETCLIAANLGVESDAVNRGRARFYLTSAIFYLEHGREDSFEDCIEASRRSARIGM HHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH KQLVLYSMRRWPRVLCTVYTRAKQVAGRQRMNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]