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The map label for this gene is lin [H]

Identifier: 91782010

GI number: 91782010

Start: 711716

End: 712519

Strand: Reverse

Name: lin [H]

Synonym: Bxe_A3834

Alternate gene names: 91782010

Gene position: 712519-711716 (Counterclockwise)

Preceding gene: 91782011

Following gene: 91782008

Centisome position: 14.55

GC content: 65.3

Gene sequence:

>804_bases
ATGAATAACCTGCATCGCGAGCTCGCCCCCATCTCCCGTGCGGCCTGGTCGCAGATCGAAGATGAAGTGGCGCGCACCTT
CAGGCGCAGCGTCGCCGGCCGTCGCGTGGTCGACGTGAAGGGCCCCGGCGGAACGGAACTCTCCGGCGTCGGCACCGGGC
ATCAGACCGCGATCGCGGCGCCGCAGCAGGGCGTCGTCGCGAAACTGTCCGAGGTGAAGAGCCTCGTCGAATTGACCGTG
CCGTTCGAATTGCAGCGCGAGGCGATCGACAGCGTGGTGCGCGGCGCGAAAGATGCCGACTGGCAACCCGCCAAAGAAGC
AGCAAAGCAACTCGCCTACGCCGAAGATCGCGCGATCTTCGACGGCTATCAGGCAGCCGGCATCGGCGGGATTCGCGAAG
GCTCGTCGAACCCTTCGCTTGCGCTGCCGGCCGACGTCAGCGACTATCCGAACGCCATCAGCAACGCGCTCGAACAACTG
CGTCTCGCCGGCGTGGACGGCCCGTATTCCGTCCTGCTGGGCGCCGATGCGTACACCGCACTGGGTGAGGCACGCGACCA
GGGCTACCCGGTCATCGAGCACATCAAGCGGATCGTGAATGGCGACATCATCTGGGCACCGGCGCTCGCCGGCGGCAGCG
TGCTGTCCACGCGCGGCGGCGACTTCGAGCTTCACCTCGGCGAAGATCTGTCGATCGGCTACACGAGCCATACGGACACC
GTGGTGCGTCTCTATCTGCGCGAAACGCTGACGTTCCTGATGCTGACGAGCGAAGCATCGGTTTCAGTGACGCAGGCGGA
ATAA

Upstream 100 bases:

>100_bases
GCCGCTGCCGATGGCGGGCAACAGCCCGATACGTCTTCGTCCGCAGAGCCGCAGGAAGGCGGCTCGTTGAACATTGGCTC
TCTCAAGGGAATCTCCCAAT

Downstream 100 bases:

>100_bases
GCCGCTCCATGCGCCGGCAATGGCCTTGATGGGCCTTGATGGGCCTTGATGGGCCTTGATGGGCCTTGATGGCCTTGATG
GCCTTACCCGGCTGCACGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MNNLHRELAPISRAAWSQIEDEVARTFRRSVAGRRVVDVKGPGGTELSGVGTGHQTAIAAPQQGVVAKLSEVKSLVELTV
PFELQREAIDSVVRGAKDADWQPAKEAAKQLAYAEDRAIFDGYQAAGIGGIREGSSNPSLALPADVSDYPNAISNALEQL
RLAGVDGPYSVLLGADAYTALGEARDQGYPVIEHIKRIVNGDIIWAPALAGGSVLSTRGGDFELHLGEDLSIGYTSHTDT
VVRLYLRETLTFLMLTSEASVSVTQAE

Sequences:

>Translated_267_residues
MNNLHRELAPISRAAWSQIEDEVARTFRRSVAGRRVVDVKGPGGTELSGVGTGHQTAIAAPQQGVVAKLSEVKSLVELTV
PFELQREAIDSVVRGAKDADWQPAKEAAKQLAYAEDRAIFDGYQAAGIGGIREGSSNPSLALPADVSDYPNAISNALEQL
RLAGVDGPYSVLLGADAYTALGEARDQGYPVIEHIKRIVNGDIIWAPALAGGSVLSTRGGDFELHLGEDLSIGYTSHTDT
VVRLYLRETLTFLMLTSEASVSVTQAE
>Mature_267_residues
MNNLHRELAPISRAAWSQIEDEVARTFRRSVAGRRVVDVKGPGGTELSGVGTGHQTAIAAPQQGVVAKLSEVKSLVELTV
PFELQREAIDSVVRGAKDADWQPAKEAAKQLAYAEDRAIFDGYQAAGIGGIREGSSNPSLALPADVSDYPNAISNALEQL
RLAGVDGPYSVLLGADAYTALGEARDQGYPVIEHIKRIVNGDIIWAPALAGGSVLSTRGGDFELHLGEDLSIGYTSHTDT
VVRLYLRETLTFLMLTSEASVSVTQAE

Specific function: Bacteriocin that has antimicrobial activity against a wide range of Gram-positive bacteria, including L.monocytogenes, B.cereus and S.aureus. May have a protease activity [H]

COG id: COG1659

COG function: function code S; Uncharacterized protein, linocin/CFP29 homolog

Gene ontology:

Cell location: Secreted (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U56 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007544 [H]

Pfam domain/function: PF04454 Linocin_M18 [H]

EC number: NA

Molecular weight: Translated: 28439; Mature: 28439

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLHRELAPISRAAWSQIEDEVARTFRRSVAGRRVVDVKGPGGTELSGVGTGHQTAIAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEECC
PQQGVVAKLSEVKSLVELTVPFELQREAIDSVVRGAKDADWQPAKEAAKQLAYAEDRAIF
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
DGYQAAGIGGIREGSSNPSLALPADVSDYPNAISNALEQLRLAGVDGPYSVLLGADAYTA
CCCHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHH
LGEARDQGYPVIEHIKRIVNGDIIWAPALAGGSVLSTRGGDFELHLGEDLSIGYTSHTDT
HHHHHCCCCCHHHHHHHHHCCCEEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCHHH
VVRLYLRETLTFLMLTSEASVSVTQAE
HHHHHHHHHHHHHHEECCCCEEEEECC
>Mature Secondary Structure
MNNLHRELAPISRAAWSQIEDEVARTFRRSVAGRRVVDVKGPGGTELSGVGTGHQTAIAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEECC
PQQGVVAKLSEVKSLVELTVPFELQREAIDSVVRGAKDADWQPAKEAAKQLAYAEDRAIF
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
DGYQAAGIGGIREGSSNPSLALPADVSDYPNAISNALEQLRLAGVDGPYSVLLGADAYTA
CCCHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHH
LGEARDQGYPVIEHIKRIVNGDIIWAPALAGGSVLSTRGGDFELHLGEDLSIGYTSHTDT
HHHHHCCCCCHHHHHHHHHCCCEEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCHHH
VVRLYLRETLTFLMLTSEASVSVTQAE
HHHHHHHHHHHHHHEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8919789 [H]