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The map label for this gene is ydcR [H]

Identifier: 91782008

GI number: 91782008

Start: 708872

End: 710296

Strand: Reverse

Name: ydcR [H]

Synonym: Bxe_A3836

Alternate gene names: 91782008

Gene position: 710296-708872 (Counterclockwise)

Preceding gene: 91782010

Following gene: 91782000

Centisome position: 14.51

GC content: 60.49

Gene sequence:

>1425_bases
ATGAATCTCTATGAGAAGCTTGCAGAAGACATCGAAACATCGATCCGGCAAGGCGTGTACCGTCATGGCGAACGCCTGCC
GTCGGTACGGCAGATCAGCCAGCAGCACCGGATCAGCGTCACCACCGCGATCCGCGCGTATCTGCTGCTCGAAAGCCGTG
GCCTCGTGACAAGCCGGCCCCAGTCGGGCTATTTCGTCAATCGCCGCGACGAGAGCGAGCGTAAGGCGCTGGAGCTCCGG
CCGTCGAAACCGATCCCGATTTCTTCGCCTGTCGACGTCAGCCGGCTGGTGCTCTCGACGCTGCGCTCGATCGGTGTGGA
CGATGCGGTGCCGCTCGGTTCGCCCTACCCCGACCCTAGCCTGTTCCCATTCGAAAGGATCAACCGCTACGCCTACGACG
CCGGGCGCGGCAAGGCGCAATGGGGCGTTACGGACGCGCTGCCGCCCGGCAATGCGAAGCTCGTGCGCCAGATCGCGCGC
CGCTACCTCGAGAATGGCATGGCCGTCGATCCGAACGAGATCATCATCACGGTCGGCGCGACAGAGGCGATCAACCTCTG
CCTTCAGGCGGTCGCGAAACCCGGTGATGTGATCGCTGTCGAGTCACCGACGTTCTACGCAATGCTCCACGCAATCGAAC
GGATGGGCATGAAGGCGATCGAGGTGTCGACCCATCCGGAACATGGCATCGATATCGAGGCGCTTGCGGCGATCGTGGAA
TCGCAACCCATCGCCGCCTGCATGGTCATGCCGAACTTCCAGAATCCGCTGGGTTTTCTGATGCCCGACGAACGCAAGCG
CGAACTGGTCGAACTCCTGACGAAGCGGAACATTCCGGTCATAGAAAACGGTGTCTACAATGAACTGCACTTCGACAGTC
CGCACCCGAGCACGTTGAAGTCGTTCGACACGAAAGGGCTGGTGCTTCACTGCTCGTCTTTCTCGAAGAGCCTTACCTCG
GCGTACCGGATCGGCTGGGCGTTGCCGGGGCGCTATCGCGATCAGGTCGAGAAGCTCAAGTTCCTCAACACGCTGACCTC
TCCGTCGATCCCGCAACTGGCGATTGCGGAATTCCTCGAACGCGATGGCTTCGAGCATCATCTGCGCAAGGTGCGCAAAG
CGTATGCGCAGCAGGCCAATCTCATGAAAGCGATCGTCTCGCGTTTCTTTCCCGAGGGCACACGCATGTCCAACCCTGCG
GGCGGATACGTGCTGTGGGTCGAATTGCCGCCCAGGGTCGACTCGATGCGGCTCTATAAACTCGCTCTCGATCAGGGCAT
CACGATCGGACCGGGCTATATGTTCTCGGTTTCGGAGACGACCTACCGGAATTTCATCCGCCTCAATTACAGCAGCCCGT
GGTCGGGCGAAATCGAGCAGGCGGTGATTACCGTCGGCAAGCTCGTTTCGATGTGTGCCAGTTAG

Upstream 100 bases:

>100_bases
GAGTGCACAAATCGGCCCGGCTCGCGCCAGTACAGTTATGCCGGAAGCCCTGCACCGGGCACGCCACCATGCCGCAGCAA
AGCACCAAAGGAATCGTGCG

Downstream 100 bases:

>100_bases
CGGTATGCCGGCCGTCGCCGCCCGCGCTTTCATGGCGGCTCTGCACGTTGTGCCCGGCGTCCTTCACAAAGACCGACGAA
GCCTCAACCGCCGACCAGCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MNLYEKLAEDIETSIRQGVYRHGERLPSVRQISQQHRISVTTAIRAYLLLESRGLVTSRPQSGYFVNRRDESERKALELR
PSKPIPISSPVDVSRLVLSTLRSIGVDDAVPLGSPYPDPSLFPFERINRYAYDAGRGKAQWGVTDALPPGNAKLVRQIAR
RYLENGMAVDPNEIIITVGATEAINLCLQAVAKPGDVIAVESPTFYAMLHAIERMGMKAIEVSTHPEHGIDIEALAAIVE
SQPIAACMVMPNFQNPLGFLMPDERKRELVELLTKRNIPVIENGVYNELHFDSPHPSTLKSFDTKGLVLHCSSFSKSLTS
AYRIGWALPGRYRDQVEKLKFLNTLTSPSIPQLAIAEFLERDGFEHHLRKVRKAYAQQANLMKAIVSRFFPEGTRMSNPA
GGYVLWVELPPRVDSMRLYKLALDQGITIGPGYMFSVSETTYRNFIRLNYSSPWSGEIEQAVITVGKLVSMCAS

Sequences:

>Translated_474_residues
MNLYEKLAEDIETSIRQGVYRHGERLPSVRQISQQHRISVTTAIRAYLLLESRGLVTSRPQSGYFVNRRDESERKALELR
PSKPIPISSPVDVSRLVLSTLRSIGVDDAVPLGSPYPDPSLFPFERINRYAYDAGRGKAQWGVTDALPPGNAKLVRQIAR
RYLENGMAVDPNEIIITVGATEAINLCLQAVAKPGDVIAVESPTFYAMLHAIERMGMKAIEVSTHPEHGIDIEALAAIVE
SQPIAACMVMPNFQNPLGFLMPDERKRELVELLTKRNIPVIENGVYNELHFDSPHPSTLKSFDTKGLVLHCSSFSKSLTS
AYRIGWALPGRYRDQVEKLKFLNTLTSPSIPQLAIAEFLERDGFEHHLRKVRKAYAQQANLMKAIVSRFFPEGTRMSNPA
GGYVLWVELPPRVDSMRLYKLALDQGITIGPGYMFSVSETTYRNFIRLNYSSPWSGEIEQAVITVGKLVSMCAS
>Mature_474_residues
MNLYEKLAEDIETSIRQGVYRHGERLPSVRQISQQHRISVTTAIRAYLLLESRGLVTSRPQSGYFVNRRDESERKALELR
PSKPIPISSPVDVSRLVLSTLRSIGVDDAVPLGSPYPDPSLFPFERINRYAYDAGRGKAQWGVTDALPPGNAKLVRQIAR
RYLENGMAVDPNEIIITVGATEAINLCLQAVAKPGDVIAVESPTFYAMLHAIERMGMKAIEVSTHPEHGIDIEALAAIVE
SQPIAACMVMPNFQNPLGFLMPDERKRELVELLTKRNIPVIENGVYNELHFDSPHPSTLKSFDTKGLVLHCSSFSKSLTS
AYRIGWALPGRYRDQVEKLKFLNTLTSPSIPQLAIAEFLERDGFEHHLRKVRKAYAQQANLMKAIVSRFFPEGTRMSNPA
GGYVLWVELPPRVDSMRLYKLALDQGITIGPGYMFSVSETTYRNFIRLNYSSPWSGEIEQAVITVGKLVSMCAS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=402, Percent_Identity=22.8855721393035, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI33469970, Length=402, Percent_Identity=22.8855721393035, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI4507369, Length=315, Percent_Identity=24.1269841269841, Blast_Score=79, Evalue=8e-15,
Organism=Escherichia coli, GI1787710, Length=469, Percent_Identity=39.4456289978678, Blast_Score=361, Evalue=1e-101,
Organism=Escherichia coli, GI1790797, Length=476, Percent_Identity=38.4453781512605, Blast_Score=326, Evalue=2e-90,
Organism=Saccharomyces cerevisiae, GI6322401, Length=252, Percent_Identity=27.3809523809524, Blast_Score=67, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6321236, Length=276, Percent_Identity=25, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21356535, Length=324, Percent_Identity=23.4567901234568, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI18859735, Length=203, Percent_Identity=23.6453201970443, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53002; Mature: 53002

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLYEKLAEDIETSIRQGVYRHGERLPSVRQISQQHRISVTTAIRAYLLLESRGLVTSRP
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
QSGYFVNRRDESERKALELRPSKPIPISSPVDVSRLVLSTLRSIGVDDAVPLGSPYPDPS
CCCCEECCCCCHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
LFPFERINRYAYDAGRGKAQWGVTDALPPGNAKLVRQIARRYLENGMAVDPNEIIITVGA
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECC
TEAINLCLQAVAKPGDVIAVESPTFYAMLHAIERMGMKAIEVSTHPEHGIDIEALAAIVE
HHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH
SQPIAACMVMPNFQNPLGFLMPDERKRELVELLTKRNIPVIENGVYNELHFDSPHPSTLK
CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCHHHH
SFDTKGLVLHCSSFSKSLTSAYRIGWALPGRYRDQVEKLKFLNTLTSPSIPQLAIAEFLE
HCCCCCEEEEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RDGFEHHLRKVRKAYAQQANLMKAIVSRFFPEGTRMSNPAGGYVLWVELPPRVDSMRLYK
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
LALDQGITIGPGYMFSVSETTYRNFIRLNYSSPWSGEIEQAVITVGKLVSMCAS
HHHHCCCEECCCEEEEECHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLYEKLAEDIETSIRQGVYRHGERLPSVRQISQQHRISVTTAIRAYLLLESRGLVTSRP
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
QSGYFVNRRDESERKALELRPSKPIPISSPVDVSRLVLSTLRSIGVDDAVPLGSPYPDPS
CCCCEECCCCCHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
LFPFERINRYAYDAGRGKAQWGVTDALPPGNAKLVRQIARRYLENGMAVDPNEIIITVGA
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECC
TEAINLCLQAVAKPGDVIAVESPTFYAMLHAIERMGMKAIEVSTHPEHGIDIEALAAIVE
HHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH
SQPIAACMVMPNFQNPLGFLMPDERKRELVELLTKRNIPVIENGVYNELHFDSPHPSTLK
CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCHHHH
SFDTKGLVLHCSSFSKSLTSAYRIGWALPGRYRDQVEKLKFLNTLTSPSIPQLAIAEFLE
HCCCCCEEEEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RDGFEHHLRKVRKAYAQQANLMKAIVSRFFPEGTRMSNPAGGYVLWVELPPRVDSMRLYK
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
LALDQGITIGPGYMFSVSETTYRNFIRLNYSSPWSGEIEQAVITVGKLVSMCAS
HHHHCCCEECCCEEEEECHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]