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The map label for this gene is cydB [H]

Identifier: 91782005

GI number: 91782005

Start: 705487

End: 706494

Strand: Direct

Name: cydB [H]

Synonym: Bxe_A3839

Alternate gene names: 91782005

Gene position: 705487-706494 (Clockwise)

Preceding gene: 91782004

Following gene: 91782006

Centisome position: 14.41

GC content: 62.6

Gene sequence:

>1008_bases
ATGCAGATCGATCTTCCTGTCGTATGGGCCGCGATCATCGGACTCGGCGTCTTCATCTACGTGATGCTGGACGGTTTCGA
TCTCGGCATTGGCCTGCTGTTTCCGTTCTTCGAGGAGAAAGGCGACCGGCAGGTGATGCTCAATACCATCGCGCCGGTCT
GGGACGGCAACGAGACGTTTCTCGTGCTCGGCGGCGCCGGGCTTTACGGGGCGTTTCCGGTGGTCTATTCGACACTGCTG
CCGGCTAACTATCTCCCGCTCATCCTGATGGTGGTGGGCCTGATCTTCCGCGGAGCGGCCTTCGAACTGCGCGGCAAGGC
AGTCAGGACCCAGCATGCGTGGGACCTCGCCTTCATGGGCGGTTCCGCGCTCGCGGGGCTTTGCCAGGGCATCGTGCTGG
GGTCGCTGCTGCAAGGCATCCGGATCGTCGACGGCCGTTTCGCCGGCGGCCCGTTCGACTGGCTCTCGCCGTTCAGCCTG
TTCTGCGGAATCGGTGTGCTCACCACCTATGCGGCGCTCGGCTGCGGCTGGCTCATCCTGAAGACGGATGGTGAATTGCA
ACGCAAGATGCGCGAGGTGATGCGCCCGCTCGTGAGCGTTCTGCTCGGCGTCATGGCCGTCGTGAGTCTATGGACGGTGA
TCGGCTTGCCGGCAGTCGCACATCGCTGGTTCGGCAGCGGCAATCTCGGCTGGTTCCTGCCGGTGCCGGTTCTCGTGATC
GTATGCGTGTGGGGCATCTTCCGCTCGCTGCGGTTGCGGCACGAAGCGACGCCTTTCCTTCTCACGCTCGCGCTATGCTT
TCTCGGCTACAGCGGTCTGCTCATCAGCATCTGGCCGAACATCGTTCCGCCTTCCCTGACGATCTGGGAAGCGTCGTCGA
GTCATTCGAGCCAGCTGTTTACGCTGGTCGGCACGGTGATCGTGCTGCCGGTCATTCTTGTCTACAACGTCATGCAGTAT
CGCGTGTTCCGCGGCAAGGTGAGGGAAGGGGACGCCGGCTACCATTGA

Upstream 100 bases:

>100_bases
ATGAAGCGCGGACCGGAAGAGCATGTCGAGCGCCGTGATTCACGCAGGCATCCGGTCCTGCGCAATCGCCCGCTGGATGC
ACTGGAAGGGGAGTGACGCC

Downstream 100 bases:

>100_bases
GGGTGACGGCGCAGTCGGGTGATTACAAGAGCACATCATGATTGTGAGGCCAGGGCAAAACTGGTTCCGGCTGCTGTTTG
TCTGGAACGGTTCCGTGTTG

Product: cytochrome bd ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MQIDLPVVWAAIIGLGVFIYVMLDGFDLGIGLLFPFFEEKGDRQVMLNTIAPVWDGNETFLVLGGAGLYGAFPVVYSTLL
PANYLPLILMVVGLIFRGAAFELRGKAVRTQHAWDLAFMGGSALAGLCQGIVLGSLLQGIRIVDGRFAGGPFDWLSPFSL
FCGIGVLTTYAALGCGWLILKTDGELQRKMREVMRPLVSVLLGVMAVVSLWTVIGLPAVAHRWFGSGNLGWFLPVPVLVI
VCVWGIFRSLRLRHEATPFLLTLALCFLGYSGLLISIWPNIVPPSLTIWEASSSHSSQLFTLVGTVIVLPVILVYNVMQY
RVFRGKVREGDAGYH

Sequences:

>Translated_335_residues
MQIDLPVVWAAIIGLGVFIYVMLDGFDLGIGLLFPFFEEKGDRQVMLNTIAPVWDGNETFLVLGGAGLYGAFPVVYSTLL
PANYLPLILMVVGLIFRGAAFELRGKAVRTQHAWDLAFMGGSALAGLCQGIVLGSLLQGIRIVDGRFAGGPFDWLSPFSL
FCGIGVLTTYAALGCGWLILKTDGELQRKMREVMRPLVSVLLGVMAVVSLWTVIGLPAVAHRWFGSGNLGWFLPVPVLVI
VCVWGIFRSLRLRHEATPFLLTLALCFLGYSGLLISIWPNIVPPSLTIWEASSSHSSQLFTLVGTVIVLPVILVYNVMQY
RVFRGKVREGDAGYH
>Mature_335_residues
MQIDLPVVWAAIIGLGVFIYVMLDGFDLGIGLLFPFFEEKGDRQVMLNTIAPVWDGNETFLVLGGAGLYGAFPVVYSTLL
PANYLPLILMVVGLIFRGAAFELRGKAVRTQHAWDLAFMGGSALAGLCQGIVLGSLLQGIRIVDGRFAGGPFDWLSPFSL
FCGIGVLTTYAALGCGWLILKTDGELQRKMREVMRPLVSVLLGVMAVVSLWTVIGLPAVAHRWFGSGNLGWFLPVPVLVI
VCVWGIFRSLRLRHEATPFLLTLALCFLGYSGLLISIWPNIVPPSLTIWEASSSHSSQLFTLVGTVIVLPVILVYNVMQY
RVFRGKVREGDAGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=368, Percent_Identity=29.3478260869565, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1787213, Length=359, Percent_Identity=29.2479108635098, Blast_Score=118, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36575; Mature: 36575

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIDLPVVWAAIIGLGVFIYVMLDGFDLGIGLLFPFFEEKGDRQVMLNTIAPVWDGNETF
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHCCCCCCCCEE
LVLGGAGLYGAFPVVYSTLLPANYLPLILMVVGLIFRGAAFELRGKAVRTQHAWDLAFMG
EEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHEEEC
GSALAGLCQGIVLGSLLQGIRIVDGRFAGGPFDWLSPFSLFCGIGVLTTYAALGCGWLIL
CHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
KTDGELQRKMREVMRPLVSVLLGVMAVVSLWTVIGLPAVAHRWFGSGNLGWFLPVPVLVI
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHH
VCVWGIFRSLRLRHEATPFLLTLALCFLGYSGLLISIWPNIVPPSLTIWEASSSHSSQLF
HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCHHHHH
TLVGTVIVLPVILVYNVMQYRVFRGKVREGDAGYH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQIDLPVVWAAIIGLGVFIYVMLDGFDLGIGLLFPFFEEKGDRQVMLNTIAPVWDGNETF
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHCCCCCCCCEE
LVLGGAGLYGAFPVVYSTLLPANYLPLILMVVGLIFRGAAFELRGKAVRTQHAWDLAFMG
EEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHEEEC
GSALAGLCQGIVLGSLLQGIRIVDGRFAGGPFDWLSPFSLFCGIGVLTTYAALGCGWLIL
CHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
KTDGELQRKMREVMRPLVSVLLGVMAVVSLWTVIGLPAVAHRWFGSGNLGWFLPVPVLVI
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHH
VCVWGIFRSLRLRHEATPFLLTLALCFLGYSGLLISIWPNIVPPSLTIWEASSSHSSQLF
HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCHHHHH
TLVGTVIVLPVILVYNVMQYRVFRGKVREGDAGYH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]