Click here to switch to the map view.

The map label for this gene is cydA [H]

Identifier: 91782004

GI number: 91782004

Start: 704094

End: 705482

Strand: Direct

Name: cydA [H]

Synonym: Bxe_A3840

Alternate gene names: 91782004

Gene position: 704094-705482 (Clockwise)

Preceding gene: 91782003

Following gene: 91782005

Centisome position: 14.38

GC content: 59.32

Gene sequence:

>1389_bases
ATGGAAATCTTCGATGCATTCCACCTTGCCAGGTTGCAGTTTGCATTCACGGTTTCGTTTCATATTATTTTCCCCGCCAT
CAGCATCGGCATGGCCAGCTTCCTCGCCGTGCTGGAATGGCGCTGGCTGCTGACCGGCGACGTCGCCTACAAGGACATGT
TCCTGTTCTGGTCGAAGATCTTTGCGGTCGGCTTCGGCATGGGGGTGGTCTCGGGCGTGGTGATGGCCTACGAGTTCGGC
ACTAACTGGAGCGGTTTTTCCAGTGTGGCCGGCAATATCACGGGACCGCTCCTGACCTATGAAGTGCTGACGGCGTTCTT
TCTCGAAGCCGGCTTTCTCGGCGTCATGCTGTTCGGCTGGGAACGGGTCACGCCGCGCGCGCATTTCTTCGCCACGCTCA
TGGTCGCGGTGGGCACGCTGATTTCCACTTTCTGGATTCTCGCGTCGAACAGCTTCATGCAGACGCCGCAAGGATTCGCT
ATCGAGGGTGGCCGTATCGTGCCGGTTGACTGGATGAAGGTGATTTTCAATCCATCGTTTCCGTATCGCCTCGCGCATAT
GACCATTGCCGCGTTCATCGTGGCGGGCTTCATCGTTGCCGCTTGCGGCGCGTGGCATCTGTTGCAGGGGCGGCGCGACA
AACCCGTCACGCGTAGTTTTTCGATGGCGCTATGGATTCTGCTTTTCCTCACGCCGATACAGATCTTCGTCGGCGATGCG
CATGGTCTGAACACACGCGAATATCAGCCGGCCAAGATCGCCGCGATCGAAGGGTTGTGGGAAACCGAGAAGGGCGGCAC
GGCGCTGAACCTGGTCGGTCTGCCCGACATGGATGCGGAAGTGACGCGATATACGCTGCAAGTGCCGCATCTGGGCAGCC
TTATCCTGACGCACAGCTGGGACGGAGAAATTCGCGGCCTGAAGGAATTTCCCCCGCAGGACCGCCCGTATTCGCCGATC
GTGTTCTGGACGTTCCGGATCATGGCGGGTCTGGGCATGCTGATGCTATTGACCACGCTGCTCGGCCTCGTGCTCAGAGT
GCGCGGCCGCCTCTACGAGACGCGGTGGTTTCAGCGTTTCGTTCTGTGCATGGGGCCTTCGGGAATCGTGGCGTTGCTGG
CCGGGTGGATAACCACGGAAGTCGGCCGTCAACCCTGGACGGTGTACGGCGTTCTGCGCACAGCGGACTCTGTGTCGCCG
ATCGGTTCCCAGCAAGCGGGCGTTTCATTGCTGATCTTCGTGATGGTGTACTTCCTGGTATTCGGCATGGGCTTCTACTA
CATGATGAAAATGATGAAGCGCGGACCGGAAGAGCATGTCGAGCGCCGTGATTCACGCAGGCATCCGGTCCTGCGCAATC
GCCCGCTGGATGCACTGGAAGGGGAGTGA

Upstream 100 bases:

>100_bases
GCACGCCTTCGTACAAGTCTGTTCCGGTTCATGTCATGCGCTCAGCGGAAACCTGATTTTCCGCACAAACGCCGCTATCA
CCTGGAGCCGTTCACCCATT

Downstream 100 bases:

>100_bases
CGCCATGCAGATCGATCTTCCTGTCGTATGGGCCGCGATCATCGGACTCGGCGTCTTCATCTACGTGATGCTGGACGGTT
TCGATCTCGGCATTGGCCTG

Product: putative cytochrome oxidase subunit I

Products: ubiquinone-8; H2O [C]

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MEIFDAFHLARLQFAFTVSFHIIFPAISIGMASFLAVLEWRWLLTGDVAYKDMFLFWSKIFAVGFGMGVVSGVVMAYEFG
TNWSGFSSVAGNITGPLLTYEVLTAFFLEAGFLGVMLFGWERVTPRAHFFATLMVAVGTLISTFWILASNSFMQTPQGFA
IEGGRIVPVDWMKVIFNPSFPYRLAHMTIAAFIVAGFIVAACGAWHLLQGRRDKPVTRSFSMALWILLFLTPIQIFVGDA
HGLNTREYQPAKIAAIEGLWETEKGGTALNLVGLPDMDAEVTRYTLQVPHLGSLILTHSWDGEIRGLKEFPPQDRPYSPI
VFWTFRIMAGLGMLMLLTTLLGLVLRVRGRLYETRWFQRFVLCMGPSGIVALLAGWITTEVGRQPWTVYGVLRTADSVSP
IGSQQAGVSLLIFVMVYFLVFGMGFYYMMKMMKRGPEEHVERRDSRRHPVLRNRPLDALEGE

Sequences:

>Translated_462_residues
MEIFDAFHLARLQFAFTVSFHIIFPAISIGMASFLAVLEWRWLLTGDVAYKDMFLFWSKIFAVGFGMGVVSGVVMAYEFG
TNWSGFSSVAGNITGPLLTYEVLTAFFLEAGFLGVMLFGWERVTPRAHFFATLMVAVGTLISTFWILASNSFMQTPQGFA
IEGGRIVPVDWMKVIFNPSFPYRLAHMTIAAFIVAGFIVAACGAWHLLQGRRDKPVTRSFSMALWILLFLTPIQIFVGDA
HGLNTREYQPAKIAAIEGLWETEKGGTALNLVGLPDMDAEVTRYTLQVPHLGSLILTHSWDGEIRGLKEFPPQDRPYSPI
VFWTFRIMAGLGMLMLLTTLLGLVLRVRGRLYETRWFQRFVLCMGPSGIVALLAGWITTEVGRQPWTVYGVLRTADSVSP
IGSQQAGVSLLIFVMVYFLVFGMGFYYMMKMMKRGPEEHVERRDSRRHPVLRNRPLDALEGE
>Mature_462_residues
MEIFDAFHLARLQFAFTVSFHIIFPAISIGMASFLAVLEWRWLLTGDVAYKDMFLFWSKIFAVGFGMGVVSGVVMAYEFG
TNWSGFSSVAGNITGPLLTYEVLTAFFLEAGFLGVMLFGWERVTPRAHFFATLMVAVGTLISTFWILASNSFMQTPQGFA
IEGGRIVPVDWMKVIFNPSFPYRLAHMTIAAFIVAGFIVAACGAWHLLQGRRDKPVTRSFSMALWILLFLTPIQIFVGDA
HGLNTREYQPAKIAAIEGLWETEKGGTALNLVGLPDMDAEVTRYTLQVPHLGSLILTHSWDGEIRGLKEFPPQDRPYSPI
VFWTFRIMAGLGMLMLLTTLLGLVLRVRGRLYETRWFQRFVLCMGPSGIVALLAGWITTEVGRQPWTVYGVLRTADSVSP
IGSQQAGVSLLIFVMVYFLVFGMGFYYMMKMMKRGPEEHVERRDSRRHPVLRNRPLDALEGE

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=515, Percent_Identity=30.0970873786408, Blast_Score=249, Evalue=3e-67,
Organism=Escherichia coli, GI87081779, Length=520, Percent_Identity=29.8076923076923, Blast_Score=245, Evalue=4e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.- [C]

Molecular weight: Translated: 51927; Mature: 51927

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ubiquinol-8; O2 [C]

Specific reaction: ubiquinol-8 + O2 = ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]