| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91781987
Identifier: 91781987
GI number: 91781987
Start: 680295
End: 682034
Strand: Direct
Name: 91781987
Synonym: Bxe_A3857
Alternate gene names: NA
Gene position: 680295-682034 (Clockwise)
Preceding gene: 91781986
Following gene: 91781990
Centisome position: 13.9
GC content: 63.91
Gene sequence:
>1740_bases ATGTTCATCGATACGCGTACTGTTGAACAAAACACGGTCATTGAAACGACGGTCTGCATCATCGGCGCAGGCGTCGCGGG AATTACGCTTGCGCTCGAAATGTCGCGGGCCGGTATCGATGCCTGCGTGCTCGAAAGCGGTGGCTTTGGACCCGACGACG CGACCCGCGATCTGTATCGCGGCGAGAACATCGGGCTTCCCTACACGTTTGCGGACGGCTCGCGCAGCCGGTATTTCGGC GGCAGCAGCAACTGCTGGGGCGGCTGGTGCCGCCCGCTCGATCCCTGGGACTTCGAAAAGCGCGACTGGATCGCGCACAG CGGCTGGCCGTTCGGGCTCGATGAACTGGCGCCCTACTATGCGCGCACGCACGAACTGCTGAAGCTCGGCCCGCAGAATT TCGACCCCGCATACTGGGAGCGCGAGATCGGTCGCCAGGACGTGCGCCGCCTGCCGCTCGCCACCGGCGATATGCGCGAT ACCGTTGCGCAGTTCAGCCCGCCGGTGCGCTTCGGCAAGGCGTATCGCGAGGAACTCTCGCGCTCCACGCGGGTGCGTGT GTTTCTCCATGCGAACGTGCTCAATATCGACGCCGACGCACAGGGCACGGCAATTTCCAGGGTGAAGATCGGCACGATCA GCGGCCGCCGGCTCACGATGACCGCGAGGATTTTCGTGCTGGCCACGGGCGGCATCGAAAACGCGCGCCTGCTGCTCGCG TCGAACAACGTGCAGGCCGCCGGCCTCGGCAATGCCAACGACCTGGTCGGCCGCTATTTCATGGATCATCCGCGCATGAT GTCGGGCAAGGTGCGCTTCCGTCCGGGCATTGCGCGCAACAAGCTGTACGACATCAAGTATCACTACCAGAATGCGGCGG TGTCGGCGCACGGCACGAAGATCTCGTCACAGTTCGCGCCGAAACAGGAATGGATGGAGCGCGAGAAGCTGCTCAATTCA CGCGTCTGGCTCTATTCGAAATGGTATGGCGAAGGCAGCGCGGGTTCCGAGGCGTTGATCCGCCTCAAGGAAGCGCTGAT GGGCAAGGACCAGCCGGGTCGCAGCCTGAAGCGCGACATCGAGACCATGATTGCGCACCCGCTGCACACCGTCGGTTTTG GTTTGACCCGGCTGTTGCAATGGCCCGCGCTGATTACCGACGTGACGCTGCAGGCTATCGTCGAAGCGGTGCCCAATCCG GATAGCCGCGTCACATTGTCGGCGGACAGGCGCGACCACTTCGGCATGCCGCGCGTGCGGGTGGAGTGGCGCCTCGGCGA ACAGGTGCAGCGCACTTTCGACAAGACGTTCCAGTTGCTCGCGCAGGAATTGCAGATGGCGAACGTCGCGGACGTCACGC TCGACGAGTCGCTCGAAGGCCGGACGTGGCCGGCGAAACTGGAAGGCACGTGGCACCACATGGGCACCACGCGCATGCAC GACTCGCCGCGCGAGGGCGTGGTCGATCGCGATTGCAAGGTGCACGGGATCAGCAACCTGTACATTGGCGGCAGTTCGGT GTTTCCGACTGTCGGCGCCAACTTCCCGACCATCACGATTGCCGCGCTGGCGCTGCGCCTCGCCGGTCATCTGAAACGGC AGCTCGATTTGCCGGAACTCGTCGGCATTACACGGGGCGACGCCGCGAACAGCGCCGCCATGTCGCTTCAGGCGCCGCCT CAGGTCGACACGTTGCCGATCGCCGCCTCGACCCTGACGCCGTTGATGAAGGAACAGTGA
Upstream 100 bases:
>100_bases AGGCAGGGTCCGGTTGCGACGTTTGCGTGGCCCGGTTGCCAGCTCCGACTGGCGAACCGTGACGCGCTCAGGAAATGCGT GAAGAAGATGGGAGTAGGGG
Downstream 100 bases:
>100_bases ACGCGCAATGAAGACGGCCGAAGCGGGCGCACGTGGAGTGCGTCGGCTTCGCTTTGGTGAGTGGCAGAGCCGCGAGCCCG TCGTGAGCCTGCTGCGCTTT
Product: putative oxidoreductase
Products: NA
Alternate protein names: GMC Oxidoreductase; FAD Dependent Oxidoreductase; Oxidoreductase; Choline Dehydrogenase-Like Flavoprotein; Choline Dehydrogenase; NAD-Dependent Epimerase/Dehydratase; GMC Family Oxidoreductase; Glucose-Methanol-Choline Family Oxidoreductase; GMC Oxidoreductase Family; Oxidoreductase-Like Protein; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; FAD-Dependent Oxidoreductase; Dehydrogenase; Transmembrane Dehydrogenase Protein; Dehydrogenase Subunit I; Solbitol Dehydrogenase Large Subunit; Capsular Polysaccharide Biosynthesis Oxidoreductase
Number of amino acids: Translated: 579; Mature: 579
Protein sequence:
>579_residues MFIDTRTVEQNTVIETTVCIIGAGVAGITLALEMSRAGIDACVLESGGFGPDDATRDLYRGENIGLPYTFADGSRSRYFG GSSNCWGGWCRPLDPWDFEKRDWIAHSGWPFGLDELAPYYARTHELLKLGPQNFDPAYWEREIGRQDVRRLPLATGDMRD TVAQFSPPVRFGKAYREELSRSTRVRVFLHANVLNIDADAQGTAISRVKIGTISGRRLTMTARIFVLATGGIENARLLLA SNNVQAAGLGNANDLVGRYFMDHPRMMSGKVRFRPGIARNKLYDIKYHYQNAAVSAHGTKISSQFAPKQEWMEREKLLNS RVWLYSKWYGEGSAGSEALIRLKEALMGKDQPGRSLKRDIETMIAHPLHTVGFGLTRLLQWPALITDVTLQAIVEAVPNP DSRVTLSADRRDHFGMPRVRVEWRLGEQVQRTFDKTFQLLAQELQMANVADVTLDESLEGRTWPAKLEGTWHHMGTTRMH DSPREGVVDRDCKVHGISNLYIGGSSVFPTVGANFPTITIAALALRLAGHLKRQLDLPELVGITRGDAANSAAMSLQAPP QVDTLPIAASTLTPLMKEQ
Sequences:
>Translated_579_residues MFIDTRTVEQNTVIETTVCIIGAGVAGITLALEMSRAGIDACVLESGGFGPDDATRDLYRGENIGLPYTFADGSRSRYFG GSSNCWGGWCRPLDPWDFEKRDWIAHSGWPFGLDELAPYYARTHELLKLGPQNFDPAYWEREIGRQDVRRLPLATGDMRD TVAQFSPPVRFGKAYREELSRSTRVRVFLHANVLNIDADAQGTAISRVKIGTISGRRLTMTARIFVLATGGIENARLLLA SNNVQAAGLGNANDLVGRYFMDHPRMMSGKVRFRPGIARNKLYDIKYHYQNAAVSAHGTKISSQFAPKQEWMEREKLLNS RVWLYSKWYGEGSAGSEALIRLKEALMGKDQPGRSLKRDIETMIAHPLHTVGFGLTRLLQWPALITDVTLQAIVEAVPNP DSRVTLSADRRDHFGMPRVRVEWRLGEQVQRTFDKTFQLLAQELQMANVADVTLDESLEGRTWPAKLEGTWHHMGTTRMH DSPREGVVDRDCKVHGISNLYIGGSSVFPTVGANFPTITIAALALRLAGHLKRQLDLPELVGITRGDAANSAAMSLQAPP QVDTLPIAASTLTPLMKEQ >Mature_579_residues MFIDTRTVEQNTVIETTVCIIGAGVAGITLALEMSRAGIDACVLESGGFGPDDATRDLYRGENIGLPYTFADGSRSRYFG GSSNCWGGWCRPLDPWDFEKRDWIAHSGWPFGLDELAPYYARTHELLKLGPQNFDPAYWEREIGRQDVRRLPLATGDMRD TVAQFSPPVRFGKAYREELSRSTRVRVFLHANVLNIDADAQGTAISRVKIGTISGRRLTMTARIFVLATGGIENARLLLA SNNVQAAGLGNANDLVGRYFMDHPRMMSGKVRFRPGIARNKLYDIKYHYQNAAVSAHGTKISSQFAPKQEWMEREKLLNS RVWLYSKWYGEGSAGSEALIRLKEALMGKDQPGRSLKRDIETMIAHPLHTVGFGLTRLLQWPALITDVTLQAIVEAVPNP DSRVTLSADRRDHFGMPRVRVEWRLGEQVQRTFDKTFQLLAQELQMANVADVTLDESLEGRTWPAKLEGTWHHMGTTRMH DSPREGVVDRDCKVHGISNLYIGGSSVFPTVGANFPTITIAALALRLAGHLKRQLDLPELVGITRGDAANSAAMSLQAPP QVDTLPIAASTLTPLMKEQ
Specific function: Unknown
COG id: COG2303
COG function: function code E; Choline dehydrogenase and related flavoproteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64330; Mature: 64330
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFIDTRTVEQNTVIETTVCIIGAGVAGITLALEMSRAGIDACVLESGGFGPDDATRDLYR CCCCCCCCCCCCCCEEEHHHHCCCHHHEEEEEEHHHCCCCEEEEECCCCCCCHHHHHHHC GENIGLPYTFADGSRSRYFGGSSNCWGGWCRPLDPWDFEKRDWIAHSGWPFGLDELAPYY CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHH ARTHELLKLGPQNFDPAYWEREIGRQDVRRLPLATGDMRDTVAQFSPPVRFGKAYREELS HHHHHHHHCCCCCCCHHHHHHHHCHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHC RSTRVRVFLHANVLNIDADAQGTAISRVKIGTISGRRLTMTARIFVLATGGIENARLLLA CCCEEEEEEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEEEEEEECCCCCCEEEEE SNNVQAAGLGNANDLVGRYFMDHPRMMSGKVRFRPGIARNKLYDIKYHYQNAAVSAHGTK ECCEEEECCCCHHHHHHHHHHCCCCHHCCEEEECCCCCCCCEEEEEEEECCCEEEECCCC ISSQFAPKQEWMEREKLLNSRVWLYSKWYGEGSAGSEALIRLKEALMGKDQPGRSLKRDI CCHHCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH ETMIAHPLHTVGFGLTRLLQWPALITDVTLQAIVEAVPNPDSRVTLSADRRDHFGMPRVR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEE VEWRLGEQVQRTFDKTFQLLAQELQMANVADVTLDESLEGRTWPAKLEGTWHHMGTTRMH EEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEECCCCEEECCCCCCC DSPREGVVDRDCKVHGISNLYIGGSSVFPTVGANFPTITIAALALRLAGHLKRQLDLPEL CCCCCCCCCCCCEEECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHH VGITRGDAANSAAMSLQAPPQVDTLPIAASTLTPLMKEQ HCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure MFIDTRTVEQNTVIETTVCIIGAGVAGITLALEMSRAGIDACVLESGGFGPDDATRDLYR CCCCCCCCCCCCCCEEEHHHHCCCHHHEEEEEEHHHCCCCEEEEECCCCCCCHHHHHHHC GENIGLPYTFADGSRSRYFGGSSNCWGGWCRPLDPWDFEKRDWIAHSGWPFGLDELAPYY CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHH ARTHELLKLGPQNFDPAYWEREIGRQDVRRLPLATGDMRDTVAQFSPPVRFGKAYREELS HHHHHHHHCCCCCCCHHHHHHHHCHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHC RSTRVRVFLHANVLNIDADAQGTAISRVKIGTISGRRLTMTARIFVLATGGIENARLLLA CCCEEEEEEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEEEEEEECCCCCCEEEEE SNNVQAAGLGNANDLVGRYFMDHPRMMSGKVRFRPGIARNKLYDIKYHYQNAAVSAHGTK ECCEEEECCCCHHHHHHHHHHCCCCHHCCEEEECCCCCCCCEEEEEEEECCCEEEECCCC ISSQFAPKQEWMEREKLLNSRVWLYSKWYGEGSAGSEALIRLKEALMGKDQPGRSLKRDI CCHHCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH ETMIAHPLHTVGFGLTRLLQWPALITDVTLQAIVEAVPNPDSRVTLSADRRDHFGMPRVR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEE VEWRLGEQVQRTFDKTFQLLAQELQMANVADVTLDESLEGRTWPAKLEGTWHHMGTTRMH EEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEECCCCEEECCCCCCC DSPREGVVDRDCKVHGISNLYIGGSSVFPTVGANFPTITIAALALRLAGHLKRQLDLPEL CCCCCCCCCCCCEEECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHH VGITRGDAANSAAMSLQAPPQVDTLPIAASTLTPLMKEQ HCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA