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The map label for this gene is secD [H]

Identifier: 91781853

GI number: 91781853

Start: 524856

End: 526943

Strand: Reverse

Name: secD [H]

Synonym: Bxe_A3992

Alternate gene names: 91781853

Gene position: 526943-524856 (Counterclockwise)

Preceding gene: 91781854

Following gene: 91781852

Centisome position: 10.76

GC content: 66.09

Gene sequence:

>2088_bases
ATGAATCGTTACCCCCTCTGGAAATATGCCGTGATGCTGGTGGCTCTGGTCATCGGCCTCGTGTACACGCTGCCCAACCT
GTTCGGCGAAGCGCCGGCGGTGCAGGTGTCGAGCGGCAAGGCAACGGTCAAGCTCGACTCGACCACGCTGTCGGCTGTCG
AAGCCGCGCTCGCCGCGAATCAGATCAAGCCGGACGACGTCACGTTCGACAACTCGGCGACCAACGCGAACATCCGCGTG
CGTCTGCCGGACACCGACACGCAGCTGCGCGTGAAGGACCTGCTGCAGAAGTCGCTGAACAGCGACCCGAGCGACCCGCA
GTACATCGTCGCGCTGAATCTGCAAAGCGCGTCGCCGCGCTGGCTGACCGCCTTGCACGCGCTGCCGATGTACCTCGGCC
TCGATCTGCGCGGCGGCGTTCACTTCCTGCTGCAGGTCGACATGGCCGGCGCGCTGAACAAGAAGCTCGATTCGGACGCT
TCGGACGCGCGCACGCTCCTGCGTGACAGCAATATCCGCGACGGCGGCGTGAACCGCGTGAACCAGACGGTGGTGATCAA
TTTCGCCGACCAGGCGACGGCGGACATCGCATCGAAGCAACTGGGCCGCAGCATCAGCGAACTCCAGTGGGCCTCGCAAA
CCGGTCCCGACGGCGGCGTGCAACTGGTCGGCACGTTCACGCCGACAGTGCAGAAAGCCGTGCAGGACGCCGCGCTCAAG
CAGAACATCACCACGCTGCATAACCGCGTGAACGAACTCGGCGTGGCCGAGCCGGTGATCCAGCAGCAAGGCTCCGACCG
TATCGTGGTCGAACTGCCGGGCGTGCAGGACACGGCGAAGGCGAAGGACATCATCGGCCGCACGGCAACGCTCGAAGCGC
GCTTGGCCGACCCGGTCAACACGCATCCGAACCCGTCCGATCCGGTGCCGCCGGGCGACGAACTGTTCACGCAGGGCAAC
CAGACGCCGGTACTGCTGCGCAAGCAGATCATCTTCACGGGCGACCGGATTATCGACGCGTCGGCGGGCTTCGACGAGCA
TCAACGTCCTTCCGTCAACATCCGTCTGGATTCGGCCGGCGGCCGTGCGGTCGCCAGCGTGTCGCGCGACAACATCGGCA
AGCCTATGGCGATGGTGCTGTTCGAAAAGGGCAAGGGCGAAGTGCTGACGGTGGCGACCATCCAGTCGGAACTGGGCGAC
CGCTTCCAGATCACCGGCCAGGCCACGCCGCAAGGCGCCGCCGACCTCGCGCTGCTGCTGCGCGCTGGTTCGCTGGCCGC
GCCGATGGACATCATCGAAGAACGCACGATCGGCCCGAGCCTCGGCGCGGACAACATCAGGAAGGGCTTCCACTCGGTGG
TGTGGGGCTTCGCGGCGATCGCCGTCTTCATGATCGCGTACTACATGCTGTTCGGCGTGATCTCCATGATCGGCCTGTCG
GTCAACCTGCTGCTGCTGATCGCGGTGCTGTCCATGCTGCAGGCCACGCTCACCCTGCCGGGTATCGCCGCTATCGCGCT
CGCACTCGGTATGGCGATCGACGCGAACGTGCTGATCAACGAGCGGGTGCGCGAGGAACTGCGCAACGGCGCGCCGCCGC
AACTGGCCATCCAGAACGGCTACGCGCACGCCTGGGCAACGATTCTCGACTCGAACGTCACCACGCTGATCGCCGGTATC
GCGCTGCTCGCATTCGGCTCGGGGCCGGTGCGCGGCTTTGCGATCGTGCACTGTATCGGCATTCTCACGTCGATGTTCTC
GGCGGTGTTCTTCTCGCGCGGCATCGTCAACCTCTGGTACGGCGGCAAGAAGAAGCTGAAGTCGCTGGCCATCGGCCAGG
TGTGGCGTCCGGATACGGCGCCCGCAGGCTCGGCGGCTTACCTCGGTAGCGAAGACGCCTCCACCGACACCGCGCAAGCC
GTCGCCGCGGTCGCCGCCAAGCCGTCGAAGGCGAGAGCCGCGGTCGCGCAGGCACGCGCCGGCAAGCCGACCGTACGCCG
CCGCAATGCGCCGGGGTCGTCGACCGGTACGCCGGGTTCATCGCCGGGTTCCACGAATACACCGCAGAAACCGGGTTCGT
CCCGCTGA

Upstream 100 bases:

>100_bases
CGGCGCGGCCTCGCCGGCGGTTCTGGCGGAACAACGCTGAATCACCCGCGCTCATCGCCGGACGCATCGCTTCCAAGCCA
ACCTTCCCGTTGGACCACTC

Downstream 100 bases:

>100_bases
GTCCCGGAGAAAACAAGACCATGGAATTTTTCCGTTTCCGCAAAGACATTCCGTTCATGCAGCGCGCGTTGATTTTCAAC
GCCATCTCGCTGCTAACGTT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 695; Mature: 695

Protein sequence:

>695_residues
MNRYPLWKYAVMLVALVIGLVYTLPNLFGEAPAVQVSSGKATVKLDSTTLSAVEAALAANQIKPDDVTFDNSATNANIRV
RLPDTDTQLRVKDLLQKSLNSDPSDPQYIVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDA
SDARTLLRDSNIRDGGVNRVNQTVVINFADQATADIASKQLGRSISELQWASQTGPDGGVQLVGTFTPTVQKAVQDAALK
QNITTLHNRVNELGVAEPVIQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGN
QTPVLLRKQIIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVASVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGD
RFQITGQATPQGAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRKGFHSVVWGFAAIAVFMIAYYMLFGVISMIGLS
VNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGI
ALLAFGSGPVRGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLKSLAIGQVWRPDTAPAGSAAYLGSEDASTDTAQA
VAAVAAKPSKARAAVAQARAGKPTVRRRNAPGSSTGTPGSSPGSTNTPQKPGSSR

Sequences:

>Translated_695_residues
MNRYPLWKYAVMLVALVIGLVYTLPNLFGEAPAVQVSSGKATVKLDSTTLSAVEAALAANQIKPDDVTFDNSATNANIRV
RLPDTDTQLRVKDLLQKSLNSDPSDPQYIVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDA
SDARTLLRDSNIRDGGVNRVNQTVVINFADQATADIASKQLGRSISELQWASQTGPDGGVQLVGTFTPTVQKAVQDAALK
QNITTLHNRVNELGVAEPVIQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGN
QTPVLLRKQIIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVASVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGD
RFQITGQATPQGAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRKGFHSVVWGFAAIAVFMIAYYMLFGVISMIGLS
VNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGI
ALLAFGSGPVRGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLKSLAIGQVWRPDTAPAGSAAYLGSEDASTDTAQA
VAAVAAKPSKARAAVAQARAGKPTVRRRNAPGSSTGTPGSSPGSTNTPQKPGSSR
>Mature_695_residues
MNRYPLWKYAVMLVALVIGLVYTLPNLFGEAPAVQVSSGKATVKLDSTTLSAVEAALAANQIKPDDVTFDNSATNANIRV
RLPDTDTQLRVKDLLQKSLNSDPSDPQYIVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDA
SDARTLLRDSNIRDGGVNRVNQTVVINFADQATADIASKQLGRSISELQWASQTGPDGGVQLVGTFTPTVQKAVQDAALK
QNITTLHNRVNELGVAEPVIQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGN
QTPVLLRKQIIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVASVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGD
RFQITGQATPQGAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRKGFHSVVWGFAAIAVFMIAYYMLFGVISMIGLS
VNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGI
ALLAFGSGPVRGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLKSLAIGQVWRPDTAPAGSAAYLGSEDASTDTAQA
VAAVAAKPSKARAAVAQARAGKPTVRRRNAPGSSTGTPGSSPGSTNTPQKPGSSR

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=629, Percent_Identity=46.422893481717, Blast_Score=519, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 73434; Mature: 73434

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPLWKYAVMLVALVIGLVYTLPNLFGEAPAVQVSSGKATVKLDSTTLSAVEAALAAN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCHHHHHHHHHHHHC
QIKPDDVTFDNSATNANIRVRLPDTDTQLRVKDLLQKSLNSDPSDPQYIVALNLQSASPR
CCCCCCEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCH
WLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDASDARTLLRDSNIRDGGVNRV
HHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCC
NQTVVINFADQATADIASKQLGRSISELQWASQTGPDGGVQLVGTFTPTVQKAVQDAALK
CCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHH
QNITTLHNRVNELGVAEPVIQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPVN
HHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCC
THPNPSDPVPPGDELFTQGNQTPVLLRKQIIFTGDRIIDASAGFDEHQRPSVNIRLDSAG
CCCCCCCCCCCCHHHHHCCCCCHHHHHHHHEEECCEEEECCCCCCCCCCCEEEEEEECCC
GRAVASVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQATPQGAADLALLL
CCEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEEECCCCCCCHHHHHHHH
RAGSLAAPMDIIEERTIGPSLGADNIRKGFHSVVWGFAAIAVFMIAYYMLFGVISMIGLS
HCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGAPPQLAIQNG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECC
YAHAWATILDSNVTTLIAGIALLAFGSGPVRGFAIVHCIGILTSMFSAVFFSRGIVNLWY
CHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
GGKKKLKSLAIGQVWRPDTAPAGSAAYLGSEDASTDTAQAVAAVAAKPSKARAAVAQARA
CCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCC
GKPTVRRRNAPGSSTGTPGSSPGSTNTPQKPGSSR
CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNRYPLWKYAVMLVALVIGLVYTLPNLFGEAPAVQVSSGKATVKLDSTTLSAVEAALAAN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCHHHHHHHHHHHHC
QIKPDDVTFDNSATNANIRVRLPDTDTQLRVKDLLQKSLNSDPSDPQYIVALNLQSASPR
CCCCCCEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCH
WLTALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSDASDARTLLRDSNIRDGGVNRV
HHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCC
NQTVVINFADQATADIASKQLGRSISELQWASQTGPDGGVQLVGTFTPTVQKAVQDAALK
CCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHH
QNITTLHNRVNELGVAEPVIQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPVN
HHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCC
THPNPSDPVPPGDELFTQGNQTPVLLRKQIIFTGDRIIDASAGFDEHQRPSVNIRLDSAG
CCCCCCCCCCCCHHHHHCCCCCHHHHHHHHEEECCEEEECCCCCCCCCCCEEEEEEECCC
GRAVASVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQATPQGAADLALLL
CCEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEEECCCCCCCHHHHHHHH
RAGSLAAPMDIIEERTIGPSLGADNIRKGFHSVVWGFAAIAVFMIAYYMLFGVISMIGLS
HCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGAPPQLAIQNG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECC
YAHAWATILDSNVTTLIAGIALLAFGSGPVRGFAIVHCIGILTSMFSAVFFSRGIVNLWY
CHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
GGKKKLKSLAIGQVWRPDTAPAGSAAYLGSEDASTDTAQAVAAVAAKPSKARAAVAQARA
CCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCC
GKPTVRRRNAPGSSTGTPGSSPGSTNTPQKPGSSR
CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]